Wall clock time and date at job start Mon Mar 30 2020 00:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21553 * 119.99965 * 0.02562 * 12 11 10 14 14 C 1.47846 * 120.00003 * 180.02562 * 12 11 10 15 15 C 1.40600 * 120.27830 * 359.72569 * 14 12 11 16 16 N 1.30815 * 121.51913 * 179.68292 * 15 14 12 17 17 C 1.33754 * 121.79551 * 0.60191 * 16 15 14 18 18 N 1.33890 * 120.61368 * 179.69326 * 17 16 15 19 19 C 1.31330 * 119.84710 * 180.02562 * 18 17 16 20 20 C 1.39755 * 120.77474 * 359.95838 * 19 18 17 21 21 N 1.31301 * 120.55958 * 0.02562 * 20 19 18 22 22 C 1.33667 * 119.70499 * 359.97438 * 21 20 19 23 23 C 1.38910 * 120.27814 * 180.02562 * 14 12 11 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.23966 * 359.97438 * 15 14 12 31 31 H 1.08012 * 119.61046 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.72244 * 179.97438 * 20 19 18 33 33 H 1.07995 * 120.99837 * 359.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.4023 -6.0979 0.0023 14 6 1.4476 -7.3784 0.0018 15 6 0.0416 -7.3853 0.0070 16 7 -0.6368 -8.5037 0.0010 17 6 -0.0303 -9.6958 0.0016 18 7 -0.7482 -10.8260 0.0015 19 6 -0.1371 -11.9885 0.0026 20 6 1.2584 -12.0627 0.0030 21 7 1.9851 -10.9692 0.0027 22 6 1.3847 -9.7749 0.0016 23 6 2.1363 -8.5847 0.0030 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 0.5429 -4.9308 0.0011 30 1 -0.4905 -6.4454 0.0114 31 1 -0.7200 -12.8978 0.0030 32 1 1.7433 -13.0278 0.0043 33 1 3.2160 -8.6087 0.0035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352737374.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:05 Heat of formation + Delta-G solvation = 43.294656 kcal Electronic energy + Delta-G solvation = -18976.093602 eV Core-core repulsion = 15809.153934 eV Total energy + Delta-G solvation = -3166.939669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.02992 -39.81863 -38.14896 -35.43652 -35.06165 -33.02112 -32.26565 -31.63128 -29.65920 -26.55841 -25.53506 -24.58931 -23.12131 -21.77287 -21.03729 -19.44945 -18.67986 -18.05073 -16.68657 -16.46964 -15.95084 -15.60574 -15.26894 -15.05115 -14.93388 -14.53152 -13.87999 -13.42862 -13.40533 -13.14656 -12.94149 -12.34688 -12.17895 -12.12513 -11.27427 -11.10111 -11.10012 -10.67213 -10.44099 -10.08840 -9.68508 -9.64006 -9.55132 -9.32038 -9.11882 -8.70212 -8.44688 -6.13847 -4.17012 -0.44810 -0.15010 1.37871 2.05891 3.08165 3.11228 3.17978 3.26015 3.34149 3.38934 3.61021 3.68916 3.69638 4.20044 4.27747 4.37335 4.43953 4.60026 4.65131 4.85517 5.19955 5.23627 5.46627 5.57017 5.93342 6.20814 6.23612 6.52659 6.59730 6.68973 7.03139 7.43306 7.51210 7.53565 7.73613 7.83962 8.18838 8.34505 8.88911 9.48368 10.97707 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.051701 B = 0.003009 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.447787 B = 9303.662449 C = 9824.662869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.120 3.880 11 N -0.710 5.710 12 C 0.554 3.446 13 O -0.536 6.536 14 C -0.170 4.170 15 C 0.194 3.806 16 N -0.456 5.456 17 C 0.270 3.730 18 N -0.418 5.418 19 C 0.111 3.889 20 C 0.071 3.929 21 N -0.405 5.405 22 C 0.018 3.982 23 C 0.035 3.965 24 H 0.262 0.738 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.398 0.602 30 H 0.180 0.820 31 H 0.184 0.816 32 H 0.183 0.817 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -23.212 0.022 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.027 4.027 10 C -0.001 4.001 11 N -0.360 5.360 12 C 0.338 3.662 13 O -0.414 6.414 14 C -0.177 4.177 15 C 0.017 3.983 16 N -0.165 5.165 17 C 0.031 3.969 18 N -0.132 5.132 19 C -0.069 4.069 20 C -0.106 4.106 21 N -0.119 5.119 22 C -0.108 4.108 23 C 0.007 3.993 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.233 0.767 30 H 0.197 0.803 31 H 0.201 0.799 32 H 0.200 0.800 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.794 -22.870 0.018 22.884 hybrid contribution 0.714 0.820 -0.002 1.087 sum -0.081 -22.049 0.015 22.050 Atomic orbital electron populations 1.69953 1.06087 1.26878 1.50242 1.24994 0.94897 0.99455 0.94917 0.86456 0.80154 0.83304 0.77653 1.19575 1.20912 1.20915 1.21059 0.93293 0.90265 1.51504 0.92132 1.19356 0.94207 0.91042 0.98066 1.21858 0.96170 0.80795 1.01298 1.46298 1.10651 1.06425 1.72595 1.17824 0.87221 0.83185 0.77938 1.90790 1.13024 1.87307 1.50276 1.21362 0.95303 0.95444 1.05631 1.23436 0.90029 0.96656 0.88219 1.67503 1.39357 0.96450 1.13150 1.20111 0.87771 0.92376 0.96686 1.68339 1.38771 0.97261 1.08879 1.24333 0.93838 0.96503 0.92219 1.24229 0.92568 0.98326 0.95496 1.68605 1.39013 0.97574 1.06736 1.20219 0.92928 0.93774 1.03857 1.21806 1.01982 0.88104 0.87371 0.92821 0.95749 0.95737 0.92015 0.92021 0.76689 0.80344 0.79866 0.79997 0.81575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.02 9.11 -34.44 -0.31 -14.34 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.38 5.61 -4.04 -0.02 2.36 16 11 N -0.71 -11.30 5.51 -61.25 -0.34 -11.64 16 12 C 0.55 8.78 7.78 -12.33 -0.10 8.68 16 13 O -0.54 -10.27 16.38 5.32 0.09 -10.18 16 14 C -0.17 -2.21 5.89 -104.83 -0.62 -2.83 16 15 C 0.19 2.31 10.69 -17.09 -0.18 2.13 16 16 N -0.46 -6.23 10.39 -12.28 -0.13 -6.36 16 17 C 0.27 3.59 7.60 -157.60 -1.20 2.39 16 18 N -0.42 -4.90 10.55 -12.39 -0.13 -5.04 16 19 C 0.11 0.77 11.21 -17.20 -0.19 0.58 16 20 C 0.07 0.48 11.22 -17.21 -0.19 0.29 16 21 N -0.40 -4.33 10.46 -10.77 -0.11 -4.45 16 22 C 0.02 0.23 6.59 -84.78 -0.56 -0.33 16 23 C 0.04 0.45 9.68 -38.38 -0.37 0.08 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.40 5.26 6.50 -40.82 -0.27 5.00 16 30 H 0.18 1.63 6.38 -52.48 -0.33 1.30 16 31 H 0.18 0.43 8.06 -52.48 -0.42 0.00 16 32 H 0.18 0.41 8.06 -52.49 -0.42 -0.02 16 33 H 0.17 2.03 7.70 -52.49 -0.40 1.63 16 LS Contribution 298.68 15.07 4.50 4.50 Total: -1.00 -34.16 298.68 -7.47 -41.63 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -3.08 Total: -0.30 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -3.99 Total: 0.65 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: 0.03 Total: -52.25 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -34.16 -7.47 -41.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352737374.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.927 kcal (2) G-P(sol) polarization free energy of solvation -34.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds