Wall clock time and date at job start Mon Mar 30 2020 00:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46840 * 179.97438 * 10 9 7 12 12 C 1.34779 * 119.99872 * 180.02562 * 11 10 9 13 13 O 1.21553 * 119.99965 * 0.02562 * 12 11 10 14 14 C 1.47846 * 120.00003 * 180.02562 * 12 11 10 15 15 C 1.40600 * 120.27830 * 359.72569 * 14 12 11 16 16 N 1.30815 * 121.51913 * 179.68292 * 15 14 12 17 17 C 1.33754 * 121.79551 * 0.60191 * 16 15 14 18 18 N 1.33890 * 120.61368 * 179.69326 * 17 16 15 19 19 C 1.31330 * 119.84710 * 180.02562 * 18 17 16 20 20 C 1.39755 * 120.77474 * 359.95838 * 19 18 17 21 21 N 1.31301 * 120.55958 * 0.02562 * 20 19 18 22 22 C 1.33667 * 119.70499 * 359.97438 * 21 20 19 23 23 C 1.38910 * 120.27814 * 180.02562 * 14 12 11 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 26 26 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 29 29 H 0.97000 * 120.00420 * 0.02562 * 11 10 9 30 30 H 1.08003 * 119.23966 * 359.97438 * 15 14 12 31 31 H 1.08012 * 119.61046 * 179.97438 * 19 18 17 32 32 H 1.08001 * 119.72244 * 179.97438 * 20 19 18 33 33 H 1.07995 * 120.99837 * 359.97438 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0018 13 8 3.4023 -6.0979 0.0023 14 6 1.4476 -7.3784 0.0018 15 6 0.0416 -7.3853 0.0070 16 7 -0.6368 -8.5037 0.0010 17 6 -0.0303 -9.6958 0.0016 18 7 -0.7482 -10.8260 0.0015 19 6 -0.1371 -11.9885 0.0026 20 6 1.2584 -12.0627 0.0030 21 7 1.9851 -10.9692 0.0027 22 6 1.3847 -9.7749 0.0016 23 6 2.1363 -8.5847 0.0030 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5568 0.8902 27 1 2.8720 -3.6043 -0.8894 28 1 2.8720 -3.6043 0.8905 29 1 0.5429 -4.9308 0.0011 30 1 -0.4905 -6.4454 0.0114 31 1 -0.7200 -12.8978 0.0030 32 1 1.7433 -13.0278 0.0043 33 1 3.2160 -8.6087 0.0035 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352737374.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:05 Heat of formation + Delta-G solvation = 17.615428 kcal Electronic energy + Delta-G solvation = -18977.207137 eV Core-core repulsion = 15809.153934 eV Total energy + Delta-G solvation = -3168.053204 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.84953 -41.01230 -39.13494 -36.74930 -36.14286 -34.89745 -33.24896 -32.61349 -31.28337 -27.68922 -26.53551 -26.04614 -24.04637 -23.17870 -22.52986 -20.45482 -19.61775 -19.03800 -18.41969 -17.63608 -16.89501 -16.76004 -16.47177 -16.38977 -16.16394 -15.74754 -15.10036 -14.93288 -14.49055 -14.31097 -13.97151 -13.90728 -13.20632 -13.07691 -12.93389 -12.87303 -12.52898 -12.25493 -12.05301 -11.65267 -11.45078 -11.11464 -10.64456 -10.59347 -10.39292 -10.07343 -9.94256 -8.22862 -6.32566 -1.27803 -0.94987 0.52151 1.19506 1.41982 1.43596 1.55889 1.94094 2.01580 2.35291 2.43126 2.78999 2.81758 2.92357 3.12604 3.33467 3.46476 3.58470 3.74636 3.90309 4.27123 4.32241 4.49371 4.50940 4.62445 4.77042 4.87185 5.17246 5.22336 5.47923 5.60568 5.78528 5.79815 6.16873 6.29043 6.42779 6.70423 6.80929 7.03540 7.36762 8.89049 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.051701 B = 0.003009 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.447787 B = 9303.662449 C = 9824.662869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.019 3.981 10 C 0.140 3.860 11 N -0.704 5.704 12 C 0.562 3.438 13 O -0.572 6.572 14 C -0.178 4.178 15 C 0.196 3.804 16 N -0.478 5.478 17 C 0.252 3.748 18 N -0.457 5.457 19 C 0.134 3.866 20 C 0.093 3.907 21 N -0.433 5.433 22 C 0.003 3.997 23 C 0.037 3.963 24 H 0.265 0.735 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.412 0.588 30 H 0.199 0.801 31 H 0.237 0.763 32 H 0.236 0.764 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.576 -25.569 0.024 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.018 4.018 10 C 0.016 3.984 11 N -0.355 5.355 12 C 0.349 3.651 13 O -0.452 6.452 14 C -0.185 4.185 15 C 0.019 3.981 16 N -0.187 5.187 17 C 0.014 3.986 18 N -0.172 5.172 19 C -0.046 4.046 20 C -0.085 4.085 21 N -0.147 5.147 22 C -0.121 4.121 23 C 0.009 3.991 24 H 0.074 0.926 25 H 0.030 0.970 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.249 0.751 30 H 0.216 0.784 31 H 0.253 0.747 32 H 0.252 0.748 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.791 -25.200 0.020 25.212 hybrid contribution 0.672 1.210 -0.003 1.384 sum -0.119 -23.990 0.017 23.990 Atomic orbital electron populations 1.70053 1.07475 1.27890 1.51139 1.25837 0.95759 1.03002 0.94554 0.85430 0.79038 0.78997 0.77781 1.18929 1.20383 1.20392 1.21493 0.93646 0.91861 1.51259 0.92180 1.19175 0.94305 0.91583 0.96746 1.21355 0.95110 0.81303 1.00586 1.46037 1.11269 1.05392 1.72769 1.18088 0.86779 0.83750 0.76515 1.90765 1.14667 1.87874 1.51939 1.20979 0.95591 0.93901 1.08008 1.23624 0.89481 0.97183 0.87810 1.67515 1.39955 0.97136 1.14121 1.20343 0.88311 0.92866 0.97123 1.68424 1.39637 0.98076 1.11079 1.25347 0.94621 0.96671 0.87924 1.25216 0.92729 0.99071 0.91486 1.68676 1.39796 0.97857 1.08418 1.20157 0.92607 0.94444 1.04876 1.21858 1.01952 0.88494 0.86787 0.92591 0.96955 0.96937 0.92764 0.92768 0.75068 0.78422 0.74655 0.74780 0.81801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.43 13.29 21.45 0.28 -53.14 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.54 -29.57 9.11 25.60 0.23 -29.34 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 0.93 5.09 29.85 0.15 1.09 16 10 C 0.14 5.65 5.61 86.38 0.48 6.14 16 11 N -0.70 -22.85 5.51 -465.97 -2.57 -25.41 16 12 C 0.56 18.26 7.78 86.79 0.67 18.94 16 13 O -0.57 -22.53 16.38 -3.88 -0.06 -22.60 16 14 C -0.18 -4.74 5.89 -20.00 -0.12 -4.85 16 15 C 0.20 4.72 10.69 85.42 0.91 5.63 16 16 N -0.48 -13.12 10.39 -192.75 -2.00 -15.12 16 17 C 0.25 6.55 7.60 134.96 1.03 7.58 16 18 N -0.46 -9.83 10.55 -193.10 -2.04 -11.87 16 19 C 0.13 1.32 11.21 85.13 0.95 2.28 16 20 C 0.09 0.87 11.22 85.14 0.96 1.82 16 21 N -0.43 -8.38 10.46 -187.99 -1.97 -10.35 16 22 C 0.00 0.08 6.59 40.34 0.27 0.35 16 23 C 0.04 0.96 9.68 23.05 0.22 1.18 16 24 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.05 2.27 8.14 -2.39 -0.02 2.26 16 29 H 0.41 11.04 6.50 -92.71 -0.60 10.44 16 30 H 0.20 3.65 6.38 -2.91 -0.02 3.63 16 31 H 0.24 -0.36 8.06 -2.90 -0.02 -0.38 16 32 H 0.24 -0.43 8.06 -2.91 -0.02 -0.46 16 33 H 0.16 4.17 7.70 -2.91 -0.02 4.14 16 Total: -1.00 -75.99 298.68 0.46 -75.53 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.56 Total: 6.21 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 6.23 Total: 11.67 kcal Atomic # 7 Polarization: -107.60 SS G_CDS: -8.29 Total: -115.89 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.06 Total: -22.60 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -75.99 0.46 -75.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352737374.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.145 kcal (2) G-P(sol) polarization free energy of solvation -75.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds