Wall clock time and date at job start Mon Mar 30 2020 01:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.50696 * 109.47341 * 239.99593 * 2 1 3 5 5 H 1.07998 * 120.00244 * 240.00038 * 4 2 1 6 6 C 1.37881 * 119.99729 * 60.00075 * 4 2 1 7 7 N 1.31506 * 120.00366 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99757 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47157 * 90.00095 * 8 6 4 10 10 H 1.48504 * 109.47035 * 210.00268 * 8 6 4 11 11 H 1.48502 * 109.46999 * 330.00079 * 8 6 4 12 12 N 1.46505 * 109.46864 * 119.99788 * 2 1 3 13 13 C 1.34777 * 119.99724 * 275.00347 * 12 2 1 14 14 O 1.21553 * 120.00290 * 359.97438 * 13 12 2 15 15 C 1.47849 * 119.99699 * 179.72334 * 13 12 2 16 16 C 1.40596 * 120.27804 * 0.02562 * 15 13 12 17 17 N 1.30812 * 121.51930 * 179.71072 * 16 15 13 18 18 C 1.33763 * 121.79424 * 0.54415 * 17 16 15 19 19 N 1.33889 * 120.60817 * 179.70202 * 18 17 16 20 20 C 1.31340 * 119.84262 * 180.02562 * 19 18 17 21 21 C 1.39763 * 120.77075 * 0.02562 * 20 19 18 22 22 N 1.31303 * 120.56087 * 359.97438 * 21 20 19 23 23 C 1.33667 * 119.70450 * 0.02562 * 22 21 20 24 24 C 1.38907 * 120.27753 * 180.27235 * 15 13 12 25 25 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 27 27 H 1.08998 * 109.46377 * 60.00617 * 1 2 3 28 28 H 0.97000 * 120.00380 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99792 * 94.99915 * 12 2 1 30 30 H 1.08006 * 119.23989 * 359.96745 * 16 15 13 31 31 H 1.07997 * 119.61332 * 180.02562 * 20 19 18 32 32 H 1.07999 * 119.71497 * 179.97438 * 21 20 19 33 33 H 1.08001 * 120.99324 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1619 -4.4117 10 1 2.4868 -0.1416 -5.1122 11 1 3.6295 -1.7585 -3.7120 12 7 2.0184 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8583 1.1613 2.4116 15 6 2.6339 -0.7166 3.5659 16 6 2.9650 -2.0819 3.5107 17 7 3.4033 -2.7224 4.5637 18 6 3.5489 -2.1164 5.7473 19 7 3.9940 -2.7964 6.8112 20 6 4.1308 -2.1865 7.9663 21 6 3.8163 -0.8314 8.1011 22 7 3.3779 -0.1423 7.0729 23 6 3.2309 -0.7424 5.8876 24 6 2.7633 -0.0306 4.7668 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5138 -0.8901 28 1 0.7091 1.1612 -3.4845 29 1 2.2490 -1.6318 1.1527 30 1 2.8589 -2.6131 2.5764 31 1 4.4905 -2.7385 8.8220 32 1 3.9348 -0.3470 9.0590 33 1 2.5128 1.0175 4.8384 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352946282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:36 Heat of formation + Delta-G solvation = 49.348427 kcal Electronic energy + Delta-G solvation = -19519.692340 eV Core-core repulsion = 16353.015183 eV Total energy + Delta-G solvation = -3166.677158 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.88252 -39.52747 -37.93385 -35.31919 -34.93097 -32.67217 -32.06352 -31.37621 -28.99106 -26.13877 -25.36845 -25.23071 -23.02663 -22.06187 -20.32656 -19.21319 -18.65912 -17.89035 -16.93707 -15.83013 -15.78508 -15.55684 -15.15658 -14.90506 -14.43142 -14.30683 -13.61942 -13.25218 -12.99942 -12.88874 -12.48502 -12.10126 -12.00583 -11.77195 -11.17863 -11.01252 -10.93847 -10.81902 -10.40362 -10.29630 -9.52638 -9.51272 -9.37615 -9.12967 -8.97314 -8.63668 -8.10005 -6.18686 -4.28720 -0.29130 -0.00291 1.53799 2.23016 3.21755 3.23179 3.28879 3.30590 3.41201 3.47808 3.76240 3.89772 3.92721 4.29809 4.34269 4.47040 4.58686 4.74749 4.91541 5.01470 5.14261 5.43576 5.63168 5.78935 6.09311 6.65394 6.73954 6.85941 7.04414 7.16393 7.26245 7.42216 7.60176 7.64561 7.80937 8.05759 8.44614 8.64542 8.87699 9.38764 10.87300 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039965 B = 0.003760 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.444505 B = 7445.122151 C = 7930.152052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.695 5.695 13 C 0.547 3.453 14 O -0.540 6.540 15 C -0.164 4.164 16 C 0.194 3.806 17 N -0.459 5.459 18 C 0.267 3.733 19 N -0.418 5.418 20 C 0.107 3.893 21 C 0.069 3.931 22 N -0.405 5.405 23 C 0.020 3.980 24 C 0.030 3.970 25 H 0.028 0.972 26 H 0.016 0.984 27 H 0.092 0.908 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.179 0.821 31 H 0.183 0.817 32 H 0.182 0.818 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.701 -5.273 18.032 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.343 5.343 13 C 0.331 3.669 14 O -0.419 6.419 15 C -0.171 4.171 16 C 0.016 3.984 17 N -0.168 5.168 18 C 0.027 3.973 19 N -0.133 5.133 20 C -0.072 4.072 21 C -0.108 4.108 22 N -0.120 5.120 23 C -0.106 4.106 24 C 0.002 3.998 25 H 0.048 0.952 26 H 0.035 0.965 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.223 0.777 30 H 0.196 0.804 31 H 0.200 0.800 32 H 0.199 0.801 33 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.576 -5.196 17.649 18.959 hybrid contribution 0.222 -0.091 -0.704 0.744 sum 4.798 -5.287 16.945 18.388 Atomic orbital electron populations 1.22098 0.98102 0.99382 1.01139 1.18870 0.91244 0.94124 0.79489 0.92932 1.21189 1.32799 1.13424 0.90168 0.91862 1.24880 0.94715 0.94894 0.99107 1.69890 1.35691 1.22312 1.24055 0.86425 0.79226 0.79272 0.82063 1.20476 1.21049 1.19766 1.46546 1.63923 1.13576 1.10254 1.17816 0.79434 0.86811 0.82880 1.90771 1.51102 1.15233 1.84745 1.21562 1.03464 0.95751 0.96329 1.23445 0.87940 0.90349 0.96630 1.67496 1.13796 1.37942 0.97539 1.20091 0.96232 0.88340 0.92589 1.68319 1.09560 1.37143 0.98294 1.24290 0.93786 0.93555 0.95609 1.24199 0.94989 0.92926 0.98710 1.68601 1.07917 1.37153 0.98291 1.20226 1.02798 0.93488 0.94098 1.21811 0.88528 1.01228 0.88258 0.95238 0.96506 0.88910 0.92454 0.77693 0.80398 0.80020 0.80135 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 2 C 0.26 6.41 2.56 -69.08 -0.18 6.23 16 3 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 4 C -0.54 -13.66 8.73 -34.44 -0.30 -13.96 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.17 11.32 55.43 0.63 -23.54 16 8 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 N -0.70 -13.56 5.02 -55.87 -0.28 -13.84 16 13 C 0.55 10.42 7.74 -12.33 -0.10 10.33 16 14 O -0.54 -12.25 16.04 5.32 0.09 -12.17 16 15 C -0.16 -2.50 5.89 -104.83 -0.62 -3.12 16 16 C 0.19 2.64 10.69 -17.10 -0.18 2.46 16 17 N -0.46 -6.88 10.39 -12.28 -0.13 -7.00 16 18 C 0.27 3.90 7.60 -157.60 -1.20 2.71 16 19 N -0.42 -5.37 10.55 -12.39 -0.13 -5.50 16 20 C 0.11 0.86 11.21 -17.19 -0.19 0.67 16 21 C 0.07 0.55 11.22 -17.21 -0.19 0.35 16 22 N -0.41 -4.90 10.46 -10.77 -0.11 -5.01 16 23 C 0.02 0.28 6.59 -84.78 -0.56 -0.28 16 24 C 0.03 0.44 9.68 -38.38 -0.37 0.07 16 25 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.39 6.32 6.57 -40.82 -0.27 6.05 16 30 H 0.18 1.95 6.38 -52.48 -0.33 1.61 16 31 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 33 H 0.17 2.39 7.70 -52.49 -0.40 1.98 16 LS Contribution 293.86 15.07 4.43 4.43 Total: -1.00 -32.76 293.86 -7.12 -39.88 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -2.95 Total: 3.75 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -3.64 Total: 3.92 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.02 Total: -54.89 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.76 -7.12 -39.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352946282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.227 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds