Wall clock time and date at job start Mon Mar 30 2020 01:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 109.46916 * 2 1 4 4 C 1.50696 * 109.47341 * 239.99593 * 2 1 3 5 5 H 1.07998 * 120.00244 * 240.00038 * 4 2 1 6 6 C 1.37881 * 119.99729 * 60.00075 * 4 2 1 7 7 N 1.31506 * 120.00366 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99757 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47157 * 90.00095 * 8 6 4 10 10 H 1.48504 * 109.47035 * 210.00268 * 8 6 4 11 11 H 1.48502 * 109.46999 * 330.00079 * 8 6 4 12 12 N 1.46505 * 109.46864 * 119.99788 * 2 1 3 13 13 C 1.34777 * 119.99724 * 275.00347 * 12 2 1 14 14 O 1.21553 * 120.00290 * 359.97438 * 13 12 2 15 15 C 1.47849 * 119.99699 * 179.72334 * 13 12 2 16 16 C 1.40596 * 120.27804 * 0.02562 * 15 13 12 17 17 N 1.30812 * 121.51930 * 179.71072 * 16 15 13 18 18 C 1.33763 * 121.79424 * 0.54415 * 17 16 15 19 19 N 1.33889 * 120.60817 * 179.70202 * 18 17 16 20 20 C 1.31340 * 119.84262 * 180.02562 * 19 18 17 21 21 C 1.39763 * 120.77075 * 0.02562 * 20 19 18 22 22 N 1.31303 * 120.56087 * 359.97438 * 21 20 19 23 23 C 1.33667 * 119.70450 * 0.02562 * 22 21 20 24 24 C 1.38907 * 120.27753 * 180.27235 * 15 13 12 25 25 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47246 * 300.00614 * 1 2 3 27 27 H 1.08998 * 109.46377 * 60.00617 * 1 2 3 28 28 H 0.97000 * 120.00380 * 180.02562 * 7 6 4 29 29 H 0.97000 * 119.99792 * 94.99915 * 12 2 1 30 30 H 1.08006 * 119.23989 * 359.96745 * 16 15 13 31 31 H 1.07997 * 119.61332 * 180.02562 * 20 19 18 32 32 H 1.07999 * 119.71497 * 179.97438 * 21 20 19 33 33 H 1.08001 * 120.99324 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6035 8 14 2.3215 -1.1205 -4.0078 9 1 1.3429 -2.1619 -4.4117 10 1 2.4868 -0.1416 -5.1122 11 1 3.6295 -1.7585 -3.7120 12 7 2.0184 -0.6906 1.1963 13 6 2.1470 -0.0182 2.3572 14 8 1.8583 1.1613 2.4116 15 6 2.6339 -0.7166 3.5659 16 6 2.9650 -2.0819 3.5107 17 7 3.4033 -2.7224 4.5637 18 6 3.5489 -2.1164 5.7473 19 7 3.9940 -2.7964 6.8112 20 6 4.1308 -2.1865 7.9663 21 6 3.8163 -0.8314 8.1011 22 7 3.3779 -0.1423 7.0729 23 6 3.2309 -0.7424 5.8876 24 6 2.7633 -0.0306 4.7668 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8898 27 1 -0.3632 0.5138 -0.8901 28 1 0.7091 1.1612 -3.4845 29 1 2.2490 -1.6318 1.1527 30 1 2.8589 -2.6131 2.5764 31 1 4.4905 -2.7385 8.8220 32 1 3.9348 -0.3470 9.0590 33 1 2.5128 1.0175 4.8384 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352946282.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:35 Heat of formation + Delta-G solvation = 24.626471 kcal Electronic energy + Delta-G solvation = -19520.764365 eV Core-core repulsion = 16353.015183 eV Total energy + Delta-G solvation = -3167.749182 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.82372 -40.92377 -39.10441 -36.86307 -36.12001 -34.47197 -33.17639 -32.48381 -30.69464 -27.37254 -27.11518 -26.26959 -24.09081 -23.51887 -21.92721 -20.52855 -19.77335 -18.99045 -18.33648 -17.37199 -17.06956 -16.77993 -16.33405 -16.03910 -15.86732 -15.72155 -15.03756 -14.57185 -14.36961 -13.98064 -13.92060 -13.69783 -13.08168 -13.00717 -12.86014 -12.83943 -12.72271 -12.28430 -12.14904 -11.95530 -11.11186 -11.05524 -10.61426 -10.58387 -10.35468 -9.92787 -9.84805 -8.17186 -6.34473 -1.24866 -0.92682 0.54898 1.24980 1.47558 1.48087 1.58374 2.11775 2.12970 2.37211 2.46051 2.80890 2.84343 2.97639 3.14155 3.38716 3.51433 3.65939 3.78002 3.93256 4.33396 4.33820 4.65081 4.75464 4.79762 4.92662 5.07958 5.23923 5.39549 5.54772 5.66327 5.79925 5.86633 6.08127 6.30950 6.69837 6.71598 6.79067 7.24456 7.41078 8.89216 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.039965 B = 0.003760 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.444505 B = 7445.122151 C = 7930.152052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.270 3.730 3 H 0.006 0.994 4 C -0.548 4.548 5 H 0.078 0.922 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.972 3.028 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.263 1.263 12 N -0.690 5.690 13 C 0.552 3.448 14 O -0.584 6.584 15 C -0.174 4.174 16 C 0.197 3.803 17 N -0.475 5.475 18 C 0.251 3.749 19 N -0.455 5.455 20 C 0.134 3.866 21 C 0.093 3.907 22 N -0.435 5.435 23 C 0.005 3.995 24 C 0.031 3.969 25 H 0.043 0.957 26 H 0.014 0.986 27 H 0.069 0.931 28 H 0.266 0.734 29 H 0.407 0.593 30 H 0.200 0.800 31 H 0.239 0.761 32 H 0.236 0.764 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.066 -7.292 20.514 22.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.024 0.976 4 C -0.586 4.586 5 H 0.096 0.904 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.796 3.204 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.188 1.188 12 N -0.339 5.339 13 C 0.338 3.662 14 O -0.466 6.466 15 C -0.182 4.182 16 C 0.020 3.980 17 N -0.184 5.184 18 C 0.013 3.987 19 N -0.170 5.170 20 C -0.046 4.046 21 C -0.085 4.085 22 N -0.150 5.150 23 C -0.119 4.119 24 C 0.003 3.997 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.244 0.756 30 H 0.217 0.783 31 H 0.255 0.745 32 H 0.252 0.748 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.942 -7.253 20.108 22.187 hybrid contribution -0.114 0.553 -1.094 1.231 sum 5.828 -6.700 19.014 20.986 Atomic orbital electron populations 1.21928 0.97968 0.99805 0.99832 1.18467 0.91338 0.92210 0.81274 0.97634 1.21544 1.32761 1.13738 0.90559 0.90422 1.25767 0.94846 0.95522 1.02269 1.70040 1.36941 1.23844 1.24665 0.85348 0.79032 0.78004 0.77978 1.19669 1.21433 1.18752 1.46214 1.64056 1.14317 1.09291 1.18238 0.78153 0.86261 0.83554 1.90740 1.52959 1.17297 1.85556 1.21080 1.05870 0.96480 0.94721 1.23606 0.87559 0.89465 0.97325 1.67527 1.14434 1.38294 0.98136 1.20327 0.96579 0.88710 0.93114 1.68429 1.11345 1.37965 0.99248 1.25354 0.89972 0.93904 0.95381 1.25227 0.91035 0.92967 0.99305 1.68666 1.09767 1.38039 0.98510 1.20117 1.03720 0.93349 0.94739 1.21829 0.88140 1.00994 0.88743 0.93769 0.96701 0.91264 0.92516 0.75610 0.78305 0.74512 0.74776 0.82352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.74 9.26 71.98 0.67 -6.07 16 2 C 0.27 13.58 2.56 44.25 0.11 13.69 16 3 H 0.01 0.34 7.58 -2.39 -0.02 0.32 16 4 C -0.55 -28.06 8.73 25.60 0.22 -27.84 16 5 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -51.60 11.32 21.45 0.24 -51.35 16 8 Si 0.97 41.16 29.54 68.60 2.03 43.18 16 9 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 10 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 12 N -0.69 -27.56 5.02 -448.95 -2.25 -29.82 16 13 C 0.55 21.93 7.74 86.79 0.67 22.60 16 14 O -0.58 -28.08 16.04 -3.88 -0.06 -28.14 16 15 C -0.17 -5.49 5.89 -20.00 -0.12 -5.61 16 16 C 0.20 5.36 10.69 85.42 0.91 6.28 16 17 N -0.47 -13.99 10.39 -192.75 -2.00 -15.99 16 18 C 0.25 7.07 7.60 134.96 1.03 8.09 16 19 N -0.45 -10.44 10.55 -193.10 -2.04 -12.48 16 20 C 0.13 1.51 11.21 85.14 0.95 2.47 16 21 C 0.09 1.04 11.22 85.14 0.96 1.99 16 22 N -0.44 -9.56 10.46 -187.99 -1.97 -11.53 16 23 C 0.00 0.13 6.59 40.34 0.27 0.40 16 24 C 0.03 0.94 9.68 23.05 0.22 1.16 16 25 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 26 H 0.01 0.68 8.14 -2.39 -0.02 0.67 16 27 H 0.07 3.75 6.07 -2.39 -0.01 3.74 16 28 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 29 H 0.41 13.15 6.57 -92.71 -0.61 12.55 16 30 H 0.20 4.24 6.38 -2.91 -0.02 4.22 16 31 H 0.24 -0.11 8.06 -2.91 -0.02 -0.13 16 32 H 0.24 -0.03 8.06 -2.91 -0.02 -0.06 16 33 H 0.16 4.86 7.70 -2.91 -0.02 4.84 16 Total: -1.00 -75.30 293.86 0.85 -74.45 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.56 Total: 13.22 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 6.34 Total: 18.47 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -8.02 Total: -121.17 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.06 Total: -28.14 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -75.30 0.85 -74.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352946282.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.074 kcal (2) G-P(sol) polarization free energy of solvation -75.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds