Wall clock time and date at job start Mon Mar 30 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46858 * 2 1 4 4 C 1.50698 * 109.46837 * 119.99439 * 2 1 3 5 5 H 1.07997 * 119.99802 * 85.87942 * 4 2 1 6 6 C 1.37875 * 120.00351 * 265.86648 * 4 2 1 7 7 N 1.31513 * 120.00160 * 177.63663 * 6 4 2 8 8 Si 1.86806 * 119.99993 * 357.64744 * 6 4 2 9 9 H 1.48500 * 109.46694 * 274.91672 * 8 6 4 10 10 H 1.48497 * 109.46910 * 34.91411 * 8 6 4 11 11 H 1.48501 * 109.46885 * 154.91764 * 8 6 4 12 12 N 1.46493 * 109.47181 * 240.00037 * 2 1 3 13 13 C 1.34777 * 120.00036 * 84.99862 * 12 2 1 14 14 O 1.21543 * 119.99992 * 359.97438 * 13 12 2 15 15 C 1.47852 * 119.99617 * 179.97438 * 13 12 2 16 16 C 1.40589 * 120.27938 * 359.72689 * 15 13 12 17 17 N 1.30819 * 121.51949 * 179.68294 * 16 15 13 18 18 C 1.33757 * 121.79288 * 0.60452 * 17 16 15 19 19 N 1.33898 * 120.61155 * 179.69925 * 18 17 16 20 20 C 1.31327 * 119.84620 * 180.02562 * 19 18 17 21 21 C 1.39764 * 120.77265 * 359.95585 * 20 19 18 22 22 N 1.31306 * 120.55803 * 0.02562 * 21 20 19 23 23 C 1.33661 * 119.71001 * 359.97438 * 22 21 20 24 24 C 1.38906 * 120.27311 * 179.97438 * 15 13 12 25 25 H 1.09000 * 109.47341 * 296.13363 * 1 2 3 26 26 H 1.08996 * 109.47554 * 56.13746 * 1 2 3 27 27 H 1.09000 * 109.47220 * 176.13458 * 1 2 3 28 28 H 0.97004 * 120.00013 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99668 * 264.99489 * 12 2 1 30 30 H 1.08002 * 119.24286 * 359.97398 * 16 15 13 31 31 H 1.07993 * 119.61373 * 179.97438 * 20 19 18 32 32 H 1.07999 * 119.71870 * 179.97438 * 21 20 19 33 33 H 1.08000 * 121.00315 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.1488 -1.7839 1.2245 6 6 2.3432 0.0105 2.3640 7 7 2.7371 -0.6135 3.4526 8 14 2.2046 1.8734 2.3535 9 1 3.4568 2.4597 1.8118 10 1 1.0585 2.2797 1.5012 11 1 1.9885 2.3614 3.7393 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8575 1.1610 -2.4118 15 6 2.6404 -0.7151 -3.5641 16 6 2.9824 -2.0776 -3.5060 17 7 3.4155 -2.7196 -4.5603 18 6 3.5665 -2.1122 -5.7424 19 7 4.0174 -2.7909 -6.8050 20 6 4.1605 -2.1795 -7.9584 21 6 3.8463 -0.8243 -8.0932 22 7 3.4020 -0.1367 -7.0666 23 6 3.2485 -0.7382 -5.8829 24 6 2.7748 -0.0279 -4.7637 25 1 -0.3634 0.4526 0.9226 26 1 -0.3634 0.5726 -0.8533 27 1 -0.3633 -1.0253 -0.0693 28 1 2.9555 -0.1064 4.2502 29 1 2.2491 -1.6318 -1.1525 30 1 2.8808 -2.6076 -2.5704 31 1 4.5248 -2.7304 -8.8128 32 1 3.9708 -0.3384 -9.0497 33 1 2.5227 1.0198 -4.8359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352946283.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:37 Heat of formation + Delta-G solvation = 49.293472 kcal Electronic energy + Delta-G solvation = -19593.061292 eV Core-core repulsion = 16426.381751 eV Total energy + Delta-G solvation = -3166.679541 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.91313 -39.62811 -38.01284 -35.37542 -35.02153 -32.62135 -32.11477 -31.53623 -29.69951 -26.22387 -25.42411 -25.26743 -23.06044 -22.06856 -20.26670 -19.36096 -18.68935 -17.99261 -17.06324 -16.23315 -15.82492 -15.63895 -15.23823 -14.90996 -14.47663 -14.31630 -13.64059 -13.25243 -13.09834 -12.94561 -12.59183 -12.44984 -12.10990 -12.03141 -11.57680 -11.21815 -10.99725 -10.87807 -10.63599 -9.96398 -9.61579 -9.55993 -9.41997 -9.27448 -9.01096 -8.80252 -8.29682 -6.29717 -4.34921 -0.32583 -0.03236 1.50186 2.19384 3.19887 3.21427 3.30167 3.33280 3.36396 3.40957 3.73042 3.84102 3.86294 4.26574 4.31316 4.42682 4.54999 4.72084 4.82262 4.97550 5.10749 5.38678 5.59756 5.73246 6.05881 6.23434 6.43787 6.57939 6.62939 6.81379 7.04756 7.13653 7.23785 7.39849 7.62329 7.96907 8.38865 8.63230 8.72921 9.30856 10.81645 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.037596 B = 0.004038 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.581035 B = 6933.200795 C = 7265.277981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.231 3.769 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.081 0.919 6 C 0.083 3.917 7 N -0.886 5.886 8 Si 0.873 3.127 9 H -0.272 1.272 10 H -0.259 1.259 11 H -0.285 1.285 12 N -0.690 5.690 13 C 0.548 3.452 14 O -0.544 6.544 15 C -0.165 4.165 16 C 0.195 3.805 17 N -0.458 5.458 18 C 0.268 3.732 19 N -0.418 5.418 20 C 0.108 3.892 21 C 0.069 3.931 22 N -0.405 5.405 23 C 0.019 3.981 24 C 0.031 3.969 25 H 0.057 0.943 26 H 0.030 0.970 27 H 0.047 0.953 28 H 0.269 0.731 29 H 0.394 0.606 30 H 0.181 0.819 31 H 0.183 0.817 32 H 0.182 0.818 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.506 -1.804 -20.506 20.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.130 3.870 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.099 0.901 6 C -0.122 4.122 7 N -0.522 5.522 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.184 1.184 11 H -0.211 1.211 12 N -0.339 5.339 13 C 0.332 3.668 14 O -0.424 6.424 15 C -0.173 4.173 16 C 0.017 3.983 17 N -0.167 5.167 18 C 0.029 3.971 19 N -0.133 5.133 20 C -0.071 4.071 21 C -0.108 4.108 22 N -0.120 5.120 23 C -0.107 4.107 24 C 0.003 3.997 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.229 0.771 30 H 0.197 0.803 31 H 0.200 0.800 32 H 0.199 0.801 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.519 -1.851 -20.064 20.206 hybrid contribution -0.028 1.286 0.010 1.286 sum 1.491 -0.565 -20.053 20.117 Atomic orbital electron populations 1.22248 0.98238 1.00373 0.99982 1.19205 0.91118 0.94386 0.82331 0.92955 1.20977 1.45768 0.95877 0.94599 0.90099 1.24926 0.93417 0.98658 0.95228 1.69871 1.43639 1.36350 1.02301 0.86912 0.79926 0.85681 0.77527 1.19788 1.18361 1.21077 1.46660 1.63780 1.13912 1.09523 1.17911 0.79193 0.86793 0.82944 1.90754 1.51467 1.15300 1.84846 1.21504 1.03720 0.95854 0.96187 1.23465 0.87862 0.90262 0.96662 1.67509 1.13799 1.37835 0.97509 1.20106 0.96092 0.88315 0.92624 1.68325 1.09486 1.37149 0.98315 1.24297 0.93722 0.93529 0.95601 1.24204 0.94951 0.92950 0.98695 1.68595 1.07931 1.37155 0.98316 1.20221 1.02835 0.93509 0.94119 1.21804 0.88497 1.01140 0.88294 0.92396 0.95100 0.93387 0.92111 0.77112 0.80271 0.79985 0.80117 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.44 37.16 0.35 -2.76 16 2 C 0.23 5.22 2.16 -69.09 -0.15 5.07 16 3 H 0.05 1.29 4.89 -51.93 -0.25 1.04 16 4 C -0.53 -13.72 9.05 -34.44 -0.31 -14.03 16 5 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 7 N -0.89 -25.38 13.96 55.43 0.77 -24.60 16 8 Si 0.87 20.85 26.74 -169.99 -4.55 16.30 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.26 -6.05 6.87 56.52 0.39 -5.66 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.69 -12.93 5.02 -55.88 -0.28 -13.21 16 13 C 0.55 9.99 7.74 -12.33 -0.10 9.89 16 14 O -0.54 -11.70 16.04 5.33 0.09 -11.62 16 15 C -0.17 -2.45 5.88 -104.83 -0.62 -3.07 16 16 C 0.19 2.62 10.69 -17.10 -0.18 2.44 16 17 N -0.46 -6.80 10.39 -12.27 -0.13 -6.93 16 18 C 0.27 3.87 7.60 -157.59 -1.20 2.67 16 19 N -0.42 -5.31 10.55 -12.39 -0.13 -5.44 16 20 C 0.11 0.86 11.21 -17.20 -0.19 0.66 16 21 C 0.07 0.53 11.22 -17.21 -0.19 0.34 16 22 N -0.41 -4.79 10.46 -10.77 -0.11 -4.90 16 23 C 0.02 0.27 6.59 -84.78 -0.56 -0.29 16 24 C 0.03 0.44 9.68 -38.38 -0.37 0.07 16 25 H 0.06 1.22 7.92 -51.93 -0.41 0.81 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 29 H 0.39 6.25 6.62 -40.82 -0.27 5.98 16 30 H 0.18 1.95 6.38 -52.49 -0.33 1.61 16 31 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 32 H 0.18 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.17 2.29 7.70 -52.49 -0.40 1.88 16 LS Contribution 293.27 15.07 4.42 4.42 Total: -1.00 -33.50 293.27 -6.47 -39.97 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -2.94 Total: 2.88 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -3.62 Total: 3.12 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.12 Total: -55.08 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.55 Total: 16.30 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -33.50 -6.47 -39.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352946283.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.266 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds