Wall clock time and date at job start Mon Mar 30 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46858 * 2 1 4 4 C 1.50698 * 109.46837 * 119.99439 * 2 1 3 5 5 H 1.07997 * 119.99802 * 85.87942 * 4 2 1 6 6 C 1.37875 * 120.00351 * 265.86648 * 4 2 1 7 7 N 1.31513 * 120.00160 * 177.63663 * 6 4 2 8 8 Si 1.86806 * 119.99993 * 357.64744 * 6 4 2 9 9 H 1.48500 * 109.46694 * 274.91672 * 8 6 4 10 10 H 1.48497 * 109.46910 * 34.91411 * 8 6 4 11 11 H 1.48501 * 109.46885 * 154.91764 * 8 6 4 12 12 N 1.46493 * 109.47181 * 240.00037 * 2 1 3 13 13 C 1.34777 * 120.00036 * 84.99862 * 12 2 1 14 14 O 1.21543 * 119.99992 * 359.97438 * 13 12 2 15 15 C 1.47852 * 119.99617 * 179.97438 * 13 12 2 16 16 C 1.40589 * 120.27938 * 359.72689 * 15 13 12 17 17 N 1.30819 * 121.51949 * 179.68294 * 16 15 13 18 18 C 1.33757 * 121.79288 * 0.60452 * 17 16 15 19 19 N 1.33898 * 120.61155 * 179.69925 * 18 17 16 20 20 C 1.31327 * 119.84620 * 180.02562 * 19 18 17 21 21 C 1.39764 * 120.77265 * 359.95585 * 20 19 18 22 22 N 1.31306 * 120.55803 * 0.02562 * 21 20 19 23 23 C 1.33661 * 119.71001 * 359.97438 * 22 21 20 24 24 C 1.38906 * 120.27311 * 179.97438 * 15 13 12 25 25 H 1.09000 * 109.47341 * 296.13363 * 1 2 3 26 26 H 1.08996 * 109.47554 * 56.13746 * 1 2 3 27 27 H 1.09000 * 109.47220 * 176.13458 * 1 2 3 28 28 H 0.97004 * 120.00013 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99668 * 264.99489 * 12 2 1 30 30 H 1.08002 * 119.24286 * 359.97398 * 16 15 13 31 31 H 1.07993 * 119.61373 * 179.97438 * 20 19 18 32 32 H 1.07999 * 119.71870 * 179.97438 * 21 20 19 33 33 H 1.08000 * 121.00315 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.1488 -1.7839 1.2245 6 6 2.3432 0.0105 2.3640 7 7 2.7371 -0.6135 3.4526 8 14 2.2046 1.8734 2.3535 9 1 3.4568 2.4597 1.8118 10 1 1.0585 2.2797 1.5012 11 1 1.9885 2.3614 3.7393 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8575 1.1610 -2.4118 15 6 2.6404 -0.7151 -3.5641 16 6 2.9824 -2.0776 -3.5060 17 7 3.4155 -2.7196 -4.5603 18 6 3.5665 -2.1122 -5.7424 19 7 4.0174 -2.7909 -6.8050 20 6 4.1605 -2.1795 -7.9584 21 6 3.8463 -0.8243 -8.0932 22 7 3.4020 -0.1367 -7.0666 23 6 3.2485 -0.7382 -5.8829 24 6 2.7748 -0.0279 -4.7637 25 1 -0.3634 0.4526 0.9226 26 1 -0.3634 0.5726 -0.8533 27 1 -0.3633 -1.0253 -0.0693 28 1 2.9555 -0.1064 4.2502 29 1 2.2491 -1.6318 -1.1525 30 1 2.8808 -2.6076 -2.5704 31 1 4.5248 -2.7304 -8.8128 32 1 3.9708 -0.3384 -9.0497 33 1 2.5227 1.0198 -4.8359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352946283.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:37 Heat of formation + Delta-G solvation = 23.376600 kcal Electronic energy + Delta-G solvation = -19594.185132 eV Core-core repulsion = 16426.381751 eV Total energy + Delta-G solvation = -3167.803380 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.82817 -40.96968 -39.12724 -36.88292 -36.12271 -34.48310 -33.24281 -32.66046 -31.19371 -27.35714 -27.14522 -26.27885 -24.08045 -23.43314 -21.83507 -20.64464 -19.80012 -19.11434 -18.54985 -17.65947 -17.05824 -16.78176 -16.30158 -15.99781 -15.90067 -15.72580 -15.09539 -14.59326 -14.43879 -14.34001 -13.93658 -13.90259 -13.35700 -13.07572 -12.99030 -12.86332 -12.81519 -12.42537 -11.98372 -11.85676 -11.22416 -11.09738 -10.85529 -10.60214 -10.36267 -9.93138 -9.91267 -8.38042 -6.45176 -1.25221 -0.93136 0.54487 1.23459 1.31285 1.36278 1.45884 2.07014 2.10920 2.28107 2.37320 2.80547 2.83800 2.92515 3.05843 3.38310 3.50746 3.64469 3.77321 3.92988 4.30691 4.33136 4.46253 4.64475 4.74610 4.78996 4.81578 5.08050 5.23488 5.33876 5.45445 5.62739 5.79919 6.08941 6.30504 6.59428 6.70264 6.74005 7.14975 7.27667 8.76524 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.037596 B = 0.004038 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.581035 B = 6933.200795 C = 7265.277981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.235 3.765 3 H 0.034 0.966 4 C -0.528 4.528 5 H 0.062 0.938 6 C 0.035 3.965 7 N -0.929 5.929 8 Si 0.923 3.077 9 H -0.275 1.275 10 H -0.251 1.251 11 H -0.279 1.279 12 N -0.689 5.689 13 C 0.555 3.445 14 O -0.580 6.580 15 C -0.176 4.176 16 C 0.196 3.804 17 N -0.477 5.477 18 C 0.251 3.749 19 N -0.456 5.456 20 C 0.134 3.866 21 C 0.093 3.907 22 N -0.434 5.434 23 C 0.004 3.996 24 C 0.033 3.967 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.271 0.729 29 H 0.408 0.592 30 H 0.198 0.802 31 H 0.238 0.762 32 H 0.236 0.764 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 -1.788 -23.989 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.131 3.869 3 H 0.052 0.948 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.166 4.166 7 N -0.567 5.567 8 Si 0.748 3.252 9 H -0.201 1.201 10 H -0.175 1.175 11 H -0.204 1.204 12 N -0.339 5.339 13 C 0.341 3.659 14 O -0.461 6.461 15 C -0.183 4.183 16 C 0.019 3.981 17 N -0.186 5.186 18 C 0.012 3.988 19 N -0.171 5.171 20 C -0.046 4.046 21 C -0.085 4.085 22 N -0.149 5.149 23 C -0.120 4.120 24 C 0.005 3.995 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.245 0.755 30 H 0.214 0.786 31 H 0.254 0.746 32 H 0.252 0.748 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.857 -1.854 -23.522 23.668 hybrid contribution -0.042 1.195 0.706 1.389 sum 1.815 -0.659 -22.816 22.898 Atomic orbital electron populations 1.22148 0.96689 1.01421 1.00028 1.18962 0.92238 0.93220 0.82461 0.94799 1.21175 1.44561 0.95190 0.95671 0.92023 1.25582 0.93638 1.02300 0.95106 1.69970 1.45809 1.37830 1.03078 0.86106 0.79894 0.81416 0.77776 1.20112 1.17504 1.20410 1.46327 1.64104 1.14545 1.08883 1.18196 0.78042 0.86263 0.83390 1.90726 1.53001 1.16903 1.85512 1.21066 1.05943 0.96399 0.94889 1.23599 0.87614 0.89646 0.97204 1.67521 1.14541 1.38363 0.98192 1.20340 0.96540 0.88797 0.93077 1.68422 1.11300 1.38083 0.99325 1.25345 0.90032 0.93932 0.95326 1.25221 0.91053 0.92944 0.99315 1.68666 1.09726 1.37952 0.98509 1.20133 1.03689 0.93294 0.94844 1.21843 0.88001 1.01015 0.88606 0.92935 0.94325 0.91973 0.92009 0.75526 0.78566 0.74596 0.74765 0.81993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 9.44 71.98 0.68 -5.22 16 2 C 0.23 10.60 2.16 44.25 0.10 10.69 16 3 H 0.03 1.68 4.89 -2.38 -0.01 1.67 16 4 C -0.53 -27.47 9.05 25.60 0.23 -27.24 16 5 H 0.06 3.39 8.06 -2.91 -0.02 3.36 16 6 C 0.03 1.89 5.47 84.65 0.46 2.35 16 7 N -0.93 -54.27 13.96 21.45 0.30 -53.97 16 8 Si 0.92 43.34 26.74 68.60 1.83 45.18 16 9 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 10 H -0.25 -11.36 6.87 99.48 0.68 -10.67 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 N -0.69 -25.92 5.02 -448.99 -2.25 -28.17 16 13 C 0.56 20.43 7.74 86.79 0.67 21.10 16 14 O -0.58 -25.24 16.04 -3.85 -0.06 -25.30 16 15 C -0.18 -5.28 5.88 -20.00 -0.12 -5.39 16 16 C 0.20 5.28 10.69 85.42 0.91 6.19 16 17 N -0.48 -14.06 10.39 -192.75 -2.00 -16.07 16 18 C 0.25 6.98 7.60 134.96 1.03 8.01 16 19 N -0.46 -10.44 10.55 -193.10 -2.04 -12.48 16 20 C 0.13 1.48 11.21 85.14 0.95 2.44 16 21 C 0.09 0.99 11.22 85.14 0.96 1.95 16 22 N -0.43 -9.16 10.46 -187.98 -1.97 -11.12 16 23 C 0.00 0.12 6.59 40.35 0.27 0.38 16 24 C 0.03 0.95 9.68 23.05 0.22 1.18 16 25 H 0.05 2.18 7.92 -2.39 -0.02 2.16 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 29 H 0.41 12.99 6.62 -92.70 -0.61 12.37 16 30 H 0.20 4.27 6.38 -2.91 -0.02 4.25 16 31 H 0.24 -0.12 8.06 -2.91 -0.02 -0.15 16 32 H 0.24 -0.15 8.06 -2.91 -0.02 -0.17 16 33 H 0.16 4.60 7.70 -2.91 -0.02 4.57 16 Total: -1.00 -75.10 293.27 0.70 -74.40 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.53 Total: 11.09 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 6.36 Total: 16.45 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -7.96 Total: -121.81 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.06 Total: -25.30 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.83 Total: 45.18 kcal Total: -75.10 0.70 -74.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352946283.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.776 kcal (2) G-P(sol) polarization free energy of solvation -75.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds