Wall clock time and date at job start Mon Mar 30 2020 01:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36846 * 120.00223 * 2 1 4 4 H 1.08001 * 119.99990 * 121.84042 * 3 2 1 5 5 C 1.39053 * 119.99765 * 301.84465 * 3 2 1 6 6 N 1.31351 * 120.00450 * 27.56941 * 5 3 2 7 7 Si 1.86806 * 119.99763 * 207.57314 * 5 3 2 8 8 H 1.48497 * 109.47197 * 89.99829 * 7 5 3 9 9 H 1.48497 * 109.47278 * 210.00016 * 7 5 3 10 10 H 1.48504 * 109.47049 * 329.99754 * 7 5 3 11 11 C 1.34775 * 119.99718 * 179.97438 * 2 1 3 12 12 O 1.21616 * 119.99716 * 180.52872 * 11 2 1 13 13 C 1.47581 * 120.00432 * 0.52916 * 11 2 1 14 14 C 1.39786 * 120.03193 * 135.47720 * 13 11 2 15 15 C 1.37642 * 119.96571 * 180.02562 * 14 13 11 16 16 C 1.39523 * 120.02972 * 0.02562 * 15 14 13 17 17 C 1.48278 * 119.96192 * 179.97438 * 16 15 14 18 18 N 1.34024 * 125.65974 * 359.95618 * 17 16 15 19 19 C 1.30639 * 109.78323 * 180.02562 * 18 17 16 20 20 N 1.34566 * 108.31123 * 359.97438 * 19 18 17 21 21 H 0.97005 * 126.74207 * 179.97438 * 20 19 18 22 22 N 1.31563 * 125.64966 * 180.02562 * 17 16 15 23 23 C 1.39522 * 120.06808 * 0.24945 * 16 15 14 24 24 C 1.37637 * 120.02607 * 359.48961 * 23 16 15 25 25 H 1.08999 * 109.47293 * 293.51707 * 1 2 3 26 26 H 1.09007 * 109.46817 * 53.51744 * 1 2 3 27 27 H 1.09001 * 109.47090 * 173.51517 * 1 2 3 28 28 H 0.97001 * 120.00068 * 180.02562 * 6 5 3 29 29 H 1.07992 * 120.01975 * 0.02562 * 14 13 11 30 30 H 1.08001 * 119.97879 * 180.02562 * 15 14 13 31 31 H 1.07997 * 125.83878 * 180.26500 * 19 18 17 32 32 H 1.07998 * 119.98666 * 179.72221 * 23 16 15 33 33 H 1.08002 * 120.01399 * 180.22694 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1851 0.0000 4 1 2.8466 1.4060 0.7946 5 6 1.9467 2.1049 -1.0230 6 7 0.7967 2.1397 -1.6567 7 14 3.3101 3.2909 -1.4961 8 1 4.1557 2.6775 -2.5515 9 1 2.7144 4.5507 -2.0092 10 1 4.1441 3.5875 -0.3037 11 6 2.1388 -1.1672 0.0005 12 8 3.3549 -1.1672 0.0102 13 6 1.4010 -2.4453 -0.0107 14 6 1.8053 -3.4790 -0.8604 15 6 1.1158 -4.6703 -0.8701 16 6 0.0137 -4.8460 -0.0329 17 6 -0.7283 -6.1298 -0.0450 18 7 -0.4410 -7.1911 -0.8114 19 6 -1.2927 -8.1524 -0.5727 20 7 -2.1586 -7.7268 0.3654 21 1 -2.9005 -8.2271 0.7399 22 7 -1.7787 -6.4153 0.6939 23 6 -0.3945 -3.8131 0.8116 24 6 0.2963 -2.6227 0.8273 25 1 -0.3634 0.4101 0.9423 26 1 -0.3633 0.6111 -0.8263 27 1 -0.3633 -1.0211 -0.1161 28 1 0.6555 2.7811 -2.3706 29 1 2.6580 -3.3431 -1.5089 30 1 1.4282 -5.4693 -1.5262 31 1 -1.2978 -9.1242 -1.0438 32 1 -1.2505 -3.9490 1.4559 33 1 -0.0176 -1.8246 1.4838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353094517.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:55 Heat of formation + Delta-G solvation = 97.022635 kcal Electronic energy + Delta-G solvation = -19608.684437 eV Core-core repulsion = 16444.074588 eV Total energy + Delta-G solvation = -3164.609849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.18211 -39.42683 -37.46133 -34.57959 -33.22417 -32.03302 -31.76617 -30.60044 -29.81706 -26.24825 -25.16921 -23.61311 -23.02613 -21.74781 -20.62697 -19.40776 -18.62153 -17.08005 -16.27124 -15.83650 -15.60919 -15.42052 -14.89308 -14.34478 -14.26866 -13.82987 -13.50673 -13.08569 -12.78509 -12.48357 -12.32441 -11.95816 -11.53880 -11.39185 -11.17952 -10.96478 -10.74485 -10.48073 -10.35138 -10.27512 -10.20819 -10.07926 -8.70537 -8.60341 -8.59361 -8.14176 -7.34358 -6.35699 -4.11135 0.85421 1.66513 1.72370 2.43693 2.86815 3.24405 3.32841 3.37020 3.85278 3.85846 4.13262 4.40440 4.46689 4.71949 4.76331 5.05335 5.26896 5.28218 5.67844 5.69714 5.84043 5.89691 6.05235 6.19644 6.33384 6.42567 6.61641 6.69157 6.70957 6.82175 6.88371 7.16456 7.28362 7.63924 7.86736 8.38837 8.57917 9.17523 9.29556 10.00380 10.61516 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.044629 B = 0.003816 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.247655 B = 7335.785711 C = 7557.237996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.436 5.436 3 C -0.333 4.333 4 H 0.085 0.915 5 C 0.065 3.935 6 N -0.852 5.852 7 Si 0.908 3.092 8 H -0.274 1.274 9 H -0.286 1.286 10 H -0.267 1.267 11 C 0.499 3.501 12 O -0.569 6.569 13 C -0.074 4.074 14 C -0.086 4.086 15 C -0.078 4.078 16 C -0.028 4.028 17 C 0.281 3.719 18 N -0.535 5.535 19 C 0.261 3.739 20 N -0.489 5.489 21 H 0.441 0.559 22 N -0.308 5.308 23 C -0.090 4.090 24 C -0.101 4.101 25 H 0.036 0.964 26 H 0.099 0.901 27 H 0.052 0.948 28 H 0.270 0.730 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.223 0.777 32 H 0.130 0.870 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.650 -17.641 1.555 19.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.155 5.155 3 C -0.460 4.460 4 H 0.103 0.897 5 C -0.143 4.143 6 N -0.487 5.487 7 Si 0.733 3.267 8 H -0.200 1.200 9 H -0.212 1.212 10 H -0.192 1.192 11 C 0.287 3.713 12 O -0.453 6.453 13 C -0.079 4.079 14 C -0.105 4.105 15 C -0.099 4.099 16 C -0.031 4.031 17 C 0.002 3.998 18 N -0.262 5.262 19 C -0.038 4.038 20 N -0.207 5.207 21 H 0.287 0.713 22 N -0.137 5.137 23 C -0.110 4.110 24 C -0.120 4.120 25 H 0.054 0.946 26 H 0.118 0.882 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.153 0.847 31 H 0.239 0.761 32 H 0.148 0.852 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.220 -17.008 1.673 18.965 hybrid contribution -0.191 -0.086 -0.185 0.279 sum -8.411 -17.094 1.488 19.110 Atomic orbital electron populations 1.22543 0.82972 1.00702 1.02871 1.43151 1.04785 1.04143 1.63427 1.19047 1.23763 0.93929 1.09256 0.89718 1.25692 0.95678 0.98057 0.94863 1.69803 1.20680 1.35501 1.22666 0.86277 0.82224 0.78580 0.79582 1.19969 1.21246 1.19161 1.18443 0.87485 0.83414 0.81955 1.90638 1.13310 1.87020 1.54293 1.20620 0.95283 0.95758 0.96208 1.21120 0.99423 0.91631 0.98326 1.21046 0.93768 0.97392 0.97656 1.17466 0.96424 0.88778 1.00460 1.22435 0.91822 0.94146 0.91397 1.70539 1.27882 1.00443 1.27342 1.26090 0.87133 1.00067 0.90519 1.48137 1.27534 1.12094 1.32938 0.71346 1.78282 1.17151 0.93940 1.24358 1.21010 0.99792 0.92105 0.98071 1.21371 0.94414 0.97077 0.99140 0.94589 0.88249 0.92985 0.91933 0.84849 0.84709 0.76061 0.85230 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.17 8.93 59.85 0.53 1.70 16 2 N -0.44 -11.39 2.92 -123.37 -0.36 -11.76 16 3 C -0.33 -9.42 8.56 -15.01 -0.13 -9.55 16 4 H 0.09 2.46 7.97 -52.49 -0.42 2.04 16 5 C 0.06 1.76 5.46 -17.46 -0.10 1.67 16 6 N -0.85 -22.97 11.22 55.50 0.62 -22.35 16 7 Si 0.91 21.21 29.63 -169.99 -5.04 16.17 16 8 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 9 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 C 0.50 12.71 7.22 -12.45 -0.09 12.62 16 12 O -0.57 -16.38 16.94 5.26 0.09 -16.29 16 13 C -0.07 -1.52 5.12 -104.93 -0.54 -2.06 16 14 C -0.09 -1.57 9.67 -39.22 -0.38 -1.95 16 15 C -0.08 -1.25 9.67 -39.32 -0.38 -1.63 16 16 C -0.03 -0.44 5.88 -104.81 -0.62 -1.06 16 17 C 0.28 4.09 7.77 -156.59 -1.22 2.88 16 18 N -0.53 -6.85 10.81 -12.40 -0.13 -6.99 16 19 C 0.26 2.08 13.11 -90.69 -1.19 0.89 16 20 N -0.49 -4.02 7.44 29.52 0.22 -3.80 16 21 H 0.44 1.76 8.96 -182.33 -1.63 0.12 16 22 N -0.31 -4.06 12.42 32.09 0.40 -3.66 16 23 C -0.09 -1.39 9.66 -39.32 -0.38 -1.77 16 24 C -0.10 -1.77 7.28 -39.22 -0.29 -2.06 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.10 2.45 5.78 -51.92 -0.30 2.15 16 27 H 0.05 1.02 4.32 -51.93 -0.22 0.80 16 28 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 30 H 0.14 1.92 7.82 -52.49 -0.41 1.51 16 31 H 0.22 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.13 1.78 7.82 -52.49 -0.41 1.37 16 33 H 0.14 2.26 6.62 -52.49 -0.35 1.91 16 LS Contribution 292.88 15.07 4.41 4.41 Total: -1.00 -35.02 292.88 -8.70 -43.72 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.15 Total: 0.86 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -4.76 Total: -0.33 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.75 Total: -48.55 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.09 Total: -16.29 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.04 Total: 16.17 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -35.02 -8.70 -43.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353094517.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.746 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds