Wall clock time and date at job start Mon Mar 30 2020 01:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36846 * 120.00223 * 2 1 4 4 H 1.08001 * 119.99990 * 121.84042 * 3 2 1 5 5 C 1.39053 * 119.99765 * 301.84465 * 3 2 1 6 6 N 1.31351 * 120.00450 * 27.56941 * 5 3 2 7 7 Si 1.86806 * 119.99763 * 207.57314 * 5 3 2 8 8 H 1.48497 * 109.47197 * 89.99829 * 7 5 3 9 9 H 1.48497 * 109.47278 * 210.00016 * 7 5 3 10 10 H 1.48504 * 109.47049 * 329.99754 * 7 5 3 11 11 C 1.34775 * 119.99718 * 179.97438 * 2 1 3 12 12 O 1.21616 * 119.99716 * 180.52872 * 11 2 1 13 13 C 1.47581 * 120.00432 * 0.52916 * 11 2 1 14 14 C 1.39786 * 120.03193 * 135.47720 * 13 11 2 15 15 C 1.37642 * 119.96571 * 180.02562 * 14 13 11 16 16 C 1.39523 * 120.02972 * 0.02562 * 15 14 13 17 17 C 1.48278 * 119.96192 * 179.97438 * 16 15 14 18 18 N 1.34024 * 125.65974 * 359.95618 * 17 16 15 19 19 C 1.30639 * 109.78323 * 180.02562 * 18 17 16 20 20 N 1.34566 * 108.31123 * 359.97438 * 19 18 17 21 21 H 0.97005 * 126.74207 * 179.97438 * 20 19 18 22 22 N 1.31563 * 125.64966 * 180.02562 * 17 16 15 23 23 C 1.39522 * 120.06808 * 0.24945 * 16 15 14 24 24 C 1.37637 * 120.02607 * 359.48961 * 23 16 15 25 25 H 1.08999 * 109.47293 * 293.51707 * 1 2 3 26 26 H 1.09007 * 109.46817 * 53.51744 * 1 2 3 27 27 H 1.09001 * 109.47090 * 173.51517 * 1 2 3 28 28 H 0.97001 * 120.00068 * 180.02562 * 6 5 3 29 29 H 1.07992 * 120.01975 * 0.02562 * 14 13 11 30 30 H 1.08001 * 119.97879 * 180.02562 * 15 14 13 31 31 H 1.07997 * 125.83878 * 180.26500 * 19 18 17 32 32 H 1.07998 * 119.98666 * 179.72221 * 23 16 15 33 33 H 1.08002 * 120.01399 * 180.22694 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1851 0.0000 4 1 2.8466 1.4060 0.7946 5 6 1.9467 2.1049 -1.0230 6 7 0.7967 2.1397 -1.6567 7 14 3.3101 3.2909 -1.4961 8 1 4.1557 2.6775 -2.5515 9 1 2.7144 4.5507 -2.0092 10 1 4.1441 3.5875 -0.3037 11 6 2.1388 -1.1672 0.0005 12 8 3.3549 -1.1672 0.0102 13 6 1.4010 -2.4453 -0.0107 14 6 1.8053 -3.4790 -0.8604 15 6 1.1158 -4.6703 -0.8701 16 6 0.0137 -4.8460 -0.0329 17 6 -0.7283 -6.1298 -0.0450 18 7 -0.4410 -7.1911 -0.8114 19 6 -1.2927 -8.1524 -0.5727 20 7 -2.1586 -7.7268 0.3654 21 1 -2.9005 -8.2271 0.7399 22 7 -1.7787 -6.4153 0.6939 23 6 -0.3945 -3.8131 0.8116 24 6 0.2963 -2.6227 0.8273 25 1 -0.3634 0.4101 0.9423 26 1 -0.3633 0.6111 -0.8263 27 1 -0.3633 -1.0211 -0.1161 28 1 0.6555 2.7811 -2.3706 29 1 2.6580 -3.3431 -1.5089 30 1 1.4282 -5.4693 -1.5262 31 1 -1.2978 -9.1242 -1.0438 32 1 -1.2505 -3.9490 1.4559 33 1 -0.0176 -1.8246 1.4838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353094517.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:54 Heat of formation + Delta-G solvation = 74.255406 kcal Electronic energy + Delta-G solvation = -19609.671698 eV Core-core repulsion = 16444.074588 eV Total energy + Delta-G solvation = -3165.597110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.01322 -41.06821 -39.11923 -36.61426 -34.39842 -33.70475 -32.87188 -31.99403 -31.02531 -28.15556 -26.90840 -25.05520 -24.12375 -22.89749 -21.85155 -21.03684 -19.37355 -19.05466 -18.01409 -17.26363 -16.90213 -16.45670 -16.36368 -16.17562 -15.62273 -15.39798 -15.04519 -14.50776 -14.41606 -14.00987 -13.74681 -13.41661 -13.18629 -13.04675 -12.94024 -12.74831 -12.39101 -12.12026 -12.05008 -11.41689 -11.11112 -11.00147 -10.76018 -10.54824 -9.95597 -9.51319 -9.37349 -8.40426 -6.24653 -0.40199 0.38891 0.80299 1.35183 1.41901 1.50465 1.77959 1.78674 2.16026 2.29210 2.77112 2.86467 3.00631 3.14910 3.57301 3.93743 3.97710 4.01941 4.21848 4.35400 4.53949 4.64785 4.74108 4.91017 5.01378 5.04740 5.14887 5.29381 5.38911 5.42606 5.46909 5.60705 5.81828 6.25476 6.27967 6.58219 7.04928 7.11192 7.31004 7.99024 8.55813 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.044629 B = 0.003816 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.247655 B = 7335.785711 C = 7557.237996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.450 5.450 3 C -0.372 4.372 4 H 0.062 0.938 5 C 0.031 3.969 6 N -0.866 5.866 7 Si 0.968 3.032 8 H -0.280 1.280 9 H -0.265 1.265 10 H -0.268 1.268 11 C 0.492 3.508 12 O -0.617 6.617 13 C -0.106 4.106 14 C -0.090 4.090 15 C -0.071 4.071 16 C -0.017 4.017 17 C 0.257 3.743 18 N -0.570 5.570 19 C 0.282 3.718 20 N -0.472 5.472 21 H 0.461 0.539 22 N -0.328 5.328 23 C -0.081 4.081 24 C -0.096 4.096 25 H 0.046 0.954 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.277 0.723 29 H 0.126 0.874 30 H 0.153 0.847 31 H 0.279 0.721 32 H 0.153 0.847 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.508 -20.129 1.210 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.168 5.168 3 C -0.499 4.499 4 H 0.080 0.920 5 C -0.176 4.176 6 N -0.500 5.500 7 Si 0.791 3.209 8 H -0.206 1.206 9 H -0.190 1.190 10 H -0.192 1.192 11 C 0.282 3.718 12 O -0.504 6.504 13 C -0.110 4.110 14 C -0.109 4.109 15 C -0.091 4.091 16 C -0.020 4.020 17 C -0.023 4.023 18 N -0.299 5.299 19 C -0.016 4.016 20 N -0.192 5.192 21 H 0.311 0.689 22 N -0.159 5.159 23 C -0.101 4.101 24 C -0.115 4.115 25 H 0.065 0.935 26 H 0.097 0.903 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.171 0.829 31 H 0.295 0.705 32 H 0.170 0.830 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.146 -19.511 1.341 22.033 hybrid contribution 0.242 0.420 -0.056 0.488 sum -9.905 -19.091 1.285 21.546 Atomic orbital electron populations 1.22508 0.81014 1.02182 1.02553 1.43361 1.06093 1.03921 1.63437 1.19046 1.24954 0.95651 1.10253 0.92006 1.26333 0.97392 0.99531 0.94363 1.69851 1.21277 1.36158 1.22692 0.85377 0.79358 0.77354 0.78832 1.20632 1.18960 1.19205 1.19150 0.87274 0.84883 0.80460 1.90573 1.15517 1.88050 1.56260 1.20262 0.97137 0.94128 0.99493 1.21122 0.99587 0.92100 0.98076 1.21124 0.93489 0.96629 0.97854 1.17716 0.95669 0.89645 0.98944 1.22176 0.92762 0.94302 0.93066 1.70493 1.30029 1.01067 1.28308 1.27112 0.84895 1.00669 0.88891 1.48078 1.27962 1.10573 1.32600 0.68947 1.78154 1.16764 0.96459 1.24494 1.21168 0.99864 0.91056 0.98012 1.21369 0.93462 0.98168 0.98455 0.93503 0.90255 0.90192 0.91227 0.85564 0.82891 0.70542 0.82969 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.72 8.93 127.77 1.14 3.87 16 2 N -0.45 -24.40 2.92 -662.49 -1.94 -26.33 16 3 C -0.37 -21.93 8.56 84.11 0.72 -21.21 16 4 H 0.06 3.82 7.97 -2.91 -0.02 3.79 16 5 C 0.03 1.69 5.46 84.96 0.46 2.15 16 6 N -0.87 -47.17 11.22 21.68 0.24 -46.92 16 7 Si 0.97 44.26 29.63 68.60 2.03 46.29 16 8 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 9 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 C 0.49 26.19 7.22 86.71 0.63 26.82 16 12 O -0.62 -37.49 16.94 -4.08 -0.07 -37.56 16 13 C -0.11 -4.44 5.12 -20.06 -0.10 -4.54 16 14 C -0.09 -3.34 9.67 22.50 0.22 -3.12 16 15 C -0.07 -2.19 9.67 22.44 0.22 -1.98 16 16 C -0.02 -0.50 5.88 -19.99 -0.12 -0.62 16 17 C 0.26 6.80 7.77 137.40 1.07 7.87 16 18 N -0.57 -12.77 10.81 -193.13 -2.09 -14.86 16 19 C 0.28 3.20 13.11 180.37 2.36 5.57 16 20 N -0.47 -5.83 7.44 -60.52 -0.45 -6.28 16 21 H 0.46 1.67 8.96 -213.09 -1.91 -0.24 16 22 N -0.33 -7.63 12.42 -52.39 -0.65 -8.28 16 23 C -0.08 -2.39 9.66 22.44 0.22 -2.17 16 24 C -0.10 -3.31 7.28 22.50 0.16 -3.14 16 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.08 3.97 5.78 -2.38 -0.01 3.96 16 27 H 0.08 3.15 4.32 -2.39 -0.01 3.14 16 28 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.15 4.13 7.82 -2.91 -0.02 4.11 16 31 H 0.28 -0.46 8.06 -2.91 -0.02 -0.48 16 32 H 0.15 3.80 7.82 -2.91 -0.02 3.77 16 33 H 0.14 4.64 6.62 -2.91 -0.02 4.62 16 Total: -1.00 -79.38 292.88 3.32 -76.06 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -0.74 Total: 8.38 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.98 Total: 9.50 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -4.88 Total: -102.67 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.07 Total: -37.56 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -79.38 3.32 -76.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353094517.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.313 kcal (2) G-P(sol) polarization free energy of solvation -79.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds