Wall clock time and date at job start Mon Mar 30 2020 00:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86805 * 120.00106 * 2 1 4 4 H 1.48500 * 109.47003 * 239.99406 * 3 2 1 5 5 H 1.48496 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46945 * 119.99677 * 3 2 1 7 7 C 1.40126 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00348 * 179.97438 * 7 2 1 9 9 C 1.46114 * 119.99578 * 0.02562 * 7 2 1 10 10 O 1.21756 * 120.00635 * 359.97438 * 9 7 2 11 11 N 1.34786 * 119.99979 * 179.97438 * 9 7 2 12 12 C 1.39671 * 119.99793 * 179.97438 * 11 9 7 13 13 C 1.40508 * 125.99517 * 0.02562 * 12 11 9 14 14 C 1.35168 * 107.88258 * 179.75044 * 13 12 11 15 15 N 1.35068 * 107.89907 * 0.36434 * 14 13 12 16 16 C 1.46502 * 125.96907 * 179.89268 * 15 14 13 17 17 C 1.50703 * 109.46792 * 124.71382 * 16 15 14 18 18 C 1.38654 * 120.78409 * 90.00088 * 17 16 15 19 19 C 1.38209 * 119.15786 * 180.02562 * 18 17 16 20 20 N 1.31870 * 120.76375 * 0.26353 * 19 18 17 21 21 C 1.31872 * 121.72489 * 359.46946 * 20 19 18 22 22 C 1.38200 * 120.76402 * 0.52682 * 21 20 19 23 23 N 1.31417 * 125.98670 * 179.97438 * 12 11 9 24 24 H 0.97004 * 120.00013 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99732 * 359.97438 * 11 9 7 26 26 H 1.08010 * 126.05764 * 359.97300 * 13 12 11 27 27 H 1.08007 * 126.05393 * 180.25447 * 14 13 12 28 28 H 1.08996 * 109.46984 * 4.72135 * 16 15 14 29 29 H 1.08997 * 109.47513 * 244.71816 * 16 15 14 30 30 H 1.07995 * 120.42251 * 0.04566 * 18 17 16 31 31 H 1.08002 * 119.61346 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.61160 * 180.27376 * 21 20 19 33 33 H 1.08004 * 120.41549 * 179.76941 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0942 1.6963 -1.2124 5 1 1.2753 2.7464 -0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0069 -1.2135 0.0005 8 1 3.0869 -1.2135 0.0001 9 6 1.2763 -2.4789 0.0005 10 8 0.0588 -2.4789 0.0005 11 7 1.9502 -3.6462 0.0005 12 6 1.2518 -4.8557 0.0011 13 6 -0.1456 -5.0024 0.0011 14 6 -0.4242 -6.3250 -0.0039 15 7 0.7480 -6.9961 0.0012 16 6 0.9056 -8.4526 0.0006 17 6 1.7698 -8.8638 -1.1636 18 6 3.1469 -8.9527 -1.0287 19 6 3.9072 -9.3326 -2.1186 20 7 3.3377 -9.6035 -3.2767 21 6 2.0310 -9.5343 -3.4400 22 6 1.2068 -9.1615 -2.3952 23 7 1.7865 -6.0562 0.0007 24 1 -0.4850 0.8401 -0.0004 25 1 2.9202 -3.6462 0.0002 26 1 -0.8690 -4.2003 0.0012 27 1 -1.4096 -6.7671 -0.0090 28 1 -0.0731 -8.9239 -0.0892 29 1 1.3765 -8.7676 0.9317 30 1 3.6194 -8.7283 -0.0839 31 1 4.9805 -9.4038 -2.0218 32 1 1.6003 -9.7679 -4.4025 33 1 0.1376 -9.1031 -2.5362 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355982427.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:36 Heat of formation + Delta-G solvation = 60.050401 kcal Electronic energy + Delta-G solvation = -19420.807509 eV Core-core repulsion = 16254.594424 eV Total energy + Delta-G solvation = -3166.213085 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.08562 -40.98645 -39.40746 -35.99166 -34.88183 -34.39272 -32.15956 -31.79775 -30.75701 -28.76722 -27.07679 -24.44781 -23.65263 -22.90236 -21.89633 -20.77877 -19.16911 -18.21473 -17.63804 -17.48277 -17.36800 -16.58975 -16.50408 -15.96259 -15.87302 -14.90752 -14.80503 -14.61826 -14.57099 -14.30765 -13.69287 -13.56447 -13.34383 -13.21063 -12.76836 -12.71418 -12.43600 -12.05159 -11.52581 -11.44237 -10.91653 -10.76594 -10.49794 -10.09000 -9.85470 -9.62494 -8.88744 -8.36533 -6.94729 0.10340 0.19844 1.00669 1.41352 1.44425 1.56130 1.66929 1.93574 2.24436 2.54810 2.79016 3.01384 3.44665 3.58654 3.59933 3.70674 4.04242 4.09873 4.16628 4.23779 4.46409 4.60104 4.68548 4.86971 4.93400 4.96846 5.06549 5.25324 5.30565 5.51627 5.69472 5.74587 6.08631 6.28976 6.33318 6.72157 6.80641 6.98969 7.42978 8.33639 8.56898 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.030148 B = 0.003786 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.533579 B = 7394.143993 C = 7875.458453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.033 3.967 3 Si 1.003 2.997 4 H -0.255 1.255 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.564 4.564 8 H 0.092 0.908 9 C 0.536 3.464 10 O -0.593 6.593 11 N -0.658 5.658 12 C 0.296 3.704 13 C -0.311 4.311 14 C 0.083 3.917 15 N -0.371 5.371 16 C 0.177 3.823 17 C -0.071 4.071 18 C -0.146 4.146 19 C 0.081 3.919 20 N -0.509 5.509 21 C 0.080 3.920 22 C -0.155 4.155 23 N -0.360 5.360 24 H 0.279 0.721 25 H 0.405 0.595 26 H 0.136 0.864 27 H 0.222 0.778 28 H 0.149 0.851 29 H 0.106 0.894 30 H 0.143 0.857 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 -17.890 -1.337 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.184 4.184 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.600 4.600 8 H 0.110 0.890 9 C 0.342 3.658 10 O -0.477 6.477 11 N -0.307 5.307 12 C 0.041 3.959 13 C -0.342 4.342 14 C -0.063 4.063 15 N -0.155 5.155 16 C 0.057 3.943 17 C -0.080 4.080 18 C -0.166 4.166 19 C -0.075 4.075 20 N -0.219 5.219 21 C -0.076 4.076 22 C -0.176 4.176 23 N -0.193 5.193 24 H 0.089 0.911 25 H 0.239 0.761 26 H 0.154 0.846 27 H 0.238 0.762 28 H 0.167 0.833 29 H 0.124 0.876 30 H 0.161 0.839 31 H 0.190 0.810 32 H 0.194 0.806 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.794 -18.780 -2.024 19.094 hybrid contribution -0.461 1.608 0.671 1.803 sum 2.332 -17.172 -1.353 17.382 Atomic orbital electron populations 1.70118 1.09461 1.29568 1.34703 1.26966 0.95608 1.04786 0.91035 0.84992 0.78199 0.74356 0.80319 1.17920 1.19562 1.17777 1.21286 0.95000 0.89199 1.54485 0.89013 1.18725 0.87280 0.82904 0.76888 1.90507 1.15180 1.86522 1.55530 1.43111 1.09694 1.02075 1.75784 1.19769 0.92275 0.87007 0.96877 1.21914 0.94969 0.97579 1.19782 1.23013 0.93004 0.90930 0.99303 1.48300 1.02781 1.05617 1.58832 1.20894 1.03007 0.73327 0.97056 1.20525 0.94812 0.96683 0.95983 1.22249 0.94219 0.98813 1.01346 1.23102 1.01558 0.95002 0.87856 1.67670 1.13802 1.14735 1.25699 1.23183 0.88838 0.95555 1.00057 1.22362 1.02912 0.99441 0.92839 1.77278 1.11678 0.95633 1.34678 0.91050 0.76108 0.84608 0.76171 0.83298 0.87570 0.83942 0.81031 0.80613 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.04 11.82 21.85 0.26 -47.78 16 2 C 0.03 1.79 5.50 85.33 0.47 2.26 16 3 Si 1.00 39.88 29.56 68.60 2.03 41.91 16 4 H -0.26 -9.62 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 6 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 7 C -0.56 -31.69 9.53 24.77 0.24 -31.45 16 8 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 9 C 0.54 31.53 7.70 86.28 0.66 32.19 16 10 O -0.59 -38.73 12.13 -4.53 -0.05 -38.79 16 11 N -0.66 -32.91 5.43 -311.70 -1.69 -34.60 16 12 C 0.30 13.84 8.10 133.46 1.08 14.92 16 13 C -0.31 -13.89 9.60 22.12 0.21 -13.67 16 14 C 0.08 2.55 11.43 83.49 0.95 3.51 16 15 N -0.37 -10.91 3.67 -351.81 -1.29 -12.20 16 16 C 0.18 3.13 6.68 85.63 0.57 3.70 16 17 C -0.07 -1.45 5.35 -19.67 -0.11 -1.56 16 18 C -0.15 -3.15 9.82 22.36 0.22 -2.93 16 19 C 0.08 1.80 11.18 84.68 0.95 2.74 16 20 N -0.51 -12.53 10.36 -195.84 -2.03 -14.56 16 21 C 0.08 1.65 11.18 84.68 0.95 2.60 16 22 C -0.16 -2.91 9.82 22.36 0.22 -2.69 16 23 N -0.36 -14.16 12.43 -54.60 -0.68 -14.84 16 24 H 0.28 14.94 8.29 -92.71 -0.77 14.17 16 25 H 0.40 17.92 8.80 -92.71 -0.82 17.11 16 26 H 0.14 7.14 5.90 -2.91 -0.02 7.12 16 27 H 0.22 4.12 8.06 -2.91 -0.02 4.09 16 28 H 0.15 1.33 8.03 -2.39 -0.02 1.31 16 29 H 0.11 1.61 8.10 -2.39 -0.02 1.59 16 30 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 31 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -81.56 299.88 3.30 -78.27 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 0.34 Total: 32.98 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 6.42 Total: 9.61 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -5.43 Total: -123.98 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.05 Total: -38.79 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -81.56 3.30 -78.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355982427.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.316 kcal (2) G-P(sol) polarization free energy of solvation -81.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds