Wall clock time and date at job start Mon Mar 30 2020 00:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99756 * 2 1 4 4 H 1.48497 * 109.47309 * 270.00064 * 3 2 1 5 5 H 1.48499 * 109.47455 * 30.00465 * 3 2 1 6 6 H 1.48510 * 109.46716 * 150.00154 * 3 2 1 7 7 C 1.37878 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00179 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99948 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47397 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00116 * 179.97438 * 10 9 7 12 12 O 1.21612 * 120.00032 * 359.97438 * 11 10 9 13 13 C 1.47326 * 120.00126 * 179.97438 * 11 10 9 14 14 C 1.37916 * 126.80045 * 0.02738 * 13 11 10 15 15 N 1.34194 * 107.89304 * 179.97438 * 14 13 11 16 16 H 0.97002 * 125.16723 * 180.02562 * 15 14 13 17 17 N 1.39775 * 109.66962 * 359.97438 * 15 14 13 18 18 C 1.31389 * 109.06654 * 0.02562 * 17 15 14 19 19 C 1.48246 * 126.51027 * 179.97438 * 18 17 15 20 20 C 1.39385 * 119.73160 * 334.75501 * 19 18 17 21 21 C 1.38387 * 119.06252 * 179.73246 * 20 19 18 22 22 C 1.38796 * 118.51210 * 0.52547 * 21 20 19 23 23 C 1.38252 * 119.37937 * 359.73919 * 22 21 20 24 24 N 1.31756 * 120.89352 * 359.97438 * 23 22 21 25 25 H 0.96991 * 120.00214 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47337 * 59.99456 * 9 7 2 27 27 H 1.08997 * 109.46843 * 299.99653 * 9 7 2 28 28 H 0.96998 * 119.99818 * 359.97438 * 10 9 7 29 29 H 1.08003 * 126.05280 * 359.94930 * 14 13 11 30 30 H 1.08000 * 120.46546 * 359.97438 * 20 19 18 31 31 H 1.07994 * 120.74433 * 180.28048 * 21 20 19 32 32 H 1.08003 * 120.30980 * 179.70481 * 22 21 20 33 33 H 1.08001 * 119.55788 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 5.3250 -2.8215 -0.0001 12 8 6.1152 -1.8971 -0.0006 13 6 5.8161 -4.2105 0.0003 14 6 5.0504 -5.3575 0.0003 15 7 5.8836 -6.4095 0.0002 16 1 5.6089 -7.3398 -0.0002 17 7 7.2075 -5.9610 -0.0004 18 6 7.2156 -4.6472 -0.0002 19 6 8.4126 -3.7726 -0.0001 20 6 9.6166 -4.2488 0.5159 21 6 10.7267 -3.4225 0.5040 22 6 10.5938 -2.1417 -0.0140 23 6 9.3677 -1.7324 -0.5045 24 7 8.3277 -2.5411 -0.4866 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6808 0.8904 27 1 3.8752 -0.6797 -0.8895 28 1 3.3696 -3.3125 -0.0001 29 1 3.9713 -5.4014 0.0007 30 1 9.6833 -5.2498 0.9158 31 1 11.6742 -3.7652 0.8927 32 1 11.4401 -1.4710 -0.0332 33 1 9.2610 -0.7362 -0.9079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356066394.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:12 Heat of formation + Delta-G solvation = 85.519315 kcal Electronic energy + Delta-G solvation = -19657.712731 eV Core-core repulsion = 16492.604061 eV Total energy + Delta-G solvation = -3165.108670 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.11779 -39.70541 -38.16343 -34.11115 -32.94744 -32.32108 -32.26309 -30.38793 -30.03159 -27.57101 -24.24430 -23.54909 -23.04074 -21.53201 -20.39587 -19.43547 -18.43311 -16.84040 -16.70772 -15.94003 -15.63666 -15.54696 -15.01710 -14.85537 -14.04775 -13.93250 -13.84568 -13.60853 -13.25189 -12.99947 -12.52320 -12.22374 -11.95693 -11.78283 -11.16074 -10.88928 -10.69367 -10.29284 -9.90597 -9.74759 -9.42025 -9.26987 -8.90534 -8.77991 -8.70208 -8.45820 -7.90055 -6.16141 -4.17293 0.79621 1.38934 1.66227 2.36184 2.58276 3.32072 3.38481 3.48174 3.96876 3.98054 4.19094 4.29194 4.39822 4.55569 4.83048 4.88262 5.00611 5.11414 5.20086 5.23196 5.44254 5.60025 5.75091 5.81627 6.06337 6.13814 6.31649 6.72534 6.95997 7.03122 7.20278 7.35783 7.42587 7.52913 8.20549 8.26272 8.67187 8.83771 9.21768 9.46118 10.95958 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.005025 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.335365 B = 5570.415437 C = 6860.061951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.225 3.775 10 N -0.710 5.710 11 C 0.567 3.433 12 O -0.516 6.516 13 C -0.242 4.242 14 C 0.094 3.906 15 N -0.464 5.464 16 H 0.443 0.557 17 N -0.280 5.280 18 C 0.165 3.835 19 C 0.191 3.809 20 C -0.145 4.145 21 C -0.088 4.088 22 C -0.169 4.169 23 C 0.102 3.898 24 N -0.403 5.403 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.020 0.980 28 H 0.389 0.611 29 H 0.192 0.808 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.294 -11.657 0.615 20.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.096 0.904 9 C 0.103 3.897 10 N -0.360 5.360 11 C 0.352 3.648 12 O -0.391 6.391 13 C -0.258 4.258 14 C -0.055 4.055 15 N -0.172 5.172 16 H 0.287 0.713 17 N -0.103 5.103 18 C -0.004 4.004 19 C 0.052 3.948 20 C -0.166 4.166 21 C -0.114 4.114 22 C -0.190 4.190 23 C -0.056 4.056 24 N -0.111 5.111 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.038 0.962 28 H 0.222 0.778 29 H 0.209 0.791 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 17.558 -11.574 0.286 21.032 hybrid contribution -0.040 0.359 0.373 0.520 sum 17.518 -11.215 0.659 20.811 Atomic orbital electron populations 1.69883 1.06228 1.27339 1.49866 1.24791 0.94763 0.99176 0.93934 0.86813 0.80631 0.83204 0.79043 1.19869 1.21071 1.18391 1.21117 0.88718 0.95088 1.52893 0.90394 1.19414 0.94860 0.78762 0.96688 1.46001 1.05221 1.10572 1.74168 1.17181 0.82886 0.86659 0.78112 1.90823 1.54669 1.44464 1.49177 1.21665 0.91368 0.94487 1.18261 1.23140 0.97681 0.86927 0.97719 1.45852 1.03484 1.08994 1.58835 0.71266 1.77179 0.97272 1.10961 1.24920 1.21299 0.91829 0.89518 0.97719 1.18391 0.89184 0.90246 0.97005 1.22055 0.92830 1.01119 1.00599 1.21435 0.98528 0.93759 0.97630 1.22290 0.99591 0.97020 1.00057 1.22852 0.87482 0.99411 0.95895 1.67974 1.29828 1.01378 1.11945 0.92367 0.95875 0.96163 0.77821 0.79142 0.84676 0.84826 0.84874 0.82506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.96 55.43 0.77 -25.93 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.54 -14.89 9.83 -34.44 -0.34 -15.23 16 8 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 9 C 0.23 5.64 4.50 -5.20 -0.02 5.61 16 10 N -0.71 -14.84 5.54 -62.60 -0.35 -15.19 16 11 C 0.57 11.78 7.81 -12.57 -0.10 11.68 16 12 O -0.52 -12.30 13.67 5.27 0.07 -12.22 16 13 C -0.24 -4.08 6.31 -102.95 -0.65 -4.73 16 14 C 0.09 1.12 11.50 -16.64 -0.19 0.93 16 15 N -0.46 -4.88 7.20 30.81 0.22 -4.66 16 16 H 0.44 2.73 8.96 -182.84 -1.64 1.09 16 17 N -0.28 -3.90 12.53 34.57 0.43 -3.47 16 18 C 0.17 2.71 7.11 -80.57 -0.57 2.14 16 19 C 0.19 3.12 6.63 -82.96 -0.55 2.57 16 20 C -0.14 -1.85 9.75 -39.10 -0.38 -2.23 16 21 C -0.09 -0.92 10.17 -39.32 -0.40 -1.32 16 22 C -0.17 -1.83 10.11 -39.37 -0.40 -2.23 16 23 C 0.10 1.45 11.17 -17.58 -0.20 1.25 16 24 N -0.40 -7.21 7.06 -9.79 -0.07 -7.28 16 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 27 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 28 H 0.39 6.96 7.27 -40.82 -0.30 6.66 16 29 H 0.19 1.58 7.48 -52.48 -0.39 1.19 16 30 H 0.14 1.49 8.04 -52.49 -0.42 1.07 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.16 1.93 8.06 -52.49 -0.42 1.50 16 LS Contribution 295.39 15.07 4.45 4.45 Total: -1.00 -36.24 295.39 -7.39 -43.63 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.36 Total: 3.10 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -3.90 Total: 0.52 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 1.01 Total: -56.52 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.07 Total: -12.22 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -36.24 -7.39 -43.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356066394.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.153 kcal (2) G-P(sol) polarization free energy of solvation -36.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds