Wall clock time and date at job start Mon Mar 30 2020 00:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99756 * 2 1 4 4 H 1.48497 * 109.47309 * 270.00064 * 3 2 1 5 5 H 1.48499 * 109.47455 * 30.00465 * 3 2 1 6 6 H 1.48510 * 109.46716 * 150.00154 * 3 2 1 7 7 C 1.37878 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00179 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99948 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.47397 * 179.97438 * 9 7 2 11 11 C 1.34772 * 120.00116 * 179.97438 * 10 9 7 12 12 O 1.21612 * 120.00032 * 359.97438 * 11 10 9 13 13 C 1.47326 * 120.00126 * 179.97438 * 11 10 9 14 14 C 1.37916 * 126.80045 * 0.02738 * 13 11 10 15 15 N 1.34194 * 107.89304 * 179.97438 * 14 13 11 16 16 H 0.97002 * 125.16723 * 180.02562 * 15 14 13 17 17 N 1.39775 * 109.66962 * 359.97438 * 15 14 13 18 18 C 1.31389 * 109.06654 * 0.02562 * 17 15 14 19 19 C 1.48246 * 126.51027 * 179.97438 * 18 17 15 20 20 C 1.39385 * 119.73160 * 334.75501 * 19 18 17 21 21 C 1.38387 * 119.06252 * 179.73246 * 20 19 18 22 22 C 1.38796 * 118.51210 * 0.52547 * 21 20 19 23 23 C 1.38252 * 119.37937 * 359.73919 * 22 21 20 24 24 N 1.31756 * 120.89352 * 359.97438 * 23 22 21 25 25 H 0.96991 * 120.00214 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47337 * 59.99456 * 9 7 2 27 27 H 1.08997 * 109.46843 * 299.99653 * 9 7 2 28 28 H 0.96998 * 119.99818 * 359.97438 * 10 9 7 29 29 H 1.08003 * 126.05280 * 359.94930 * 14 13 11 30 30 H 1.08000 * 120.46546 * 359.97438 * 20 19 18 31 31 H 1.07994 * 120.74433 * 180.28048 * 21 20 19 32 32 H 1.08003 * 120.30980 * 179.70481 * 22 21 20 33 33 H 1.08001 * 119.55788 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 7 4.0000 -2.5752 -0.0001 11 6 5.3250 -2.8215 -0.0001 12 8 6.1152 -1.8971 -0.0006 13 6 5.8161 -4.2105 0.0003 14 6 5.0504 -5.3575 0.0003 15 7 5.8836 -6.4095 0.0002 16 1 5.6089 -7.3398 -0.0002 17 7 7.2075 -5.9610 -0.0004 18 6 7.2156 -4.6472 -0.0002 19 6 8.4126 -3.7726 -0.0001 20 6 9.6166 -4.2488 0.5159 21 6 10.7267 -3.4225 0.5040 22 6 10.5938 -2.1417 -0.0140 23 6 9.3677 -1.7324 -0.5045 24 7 8.3277 -2.5411 -0.4866 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6808 0.8904 27 1 3.8752 -0.6797 -0.8895 28 1 3.3696 -3.3125 -0.0001 29 1 3.9713 -5.4014 0.0007 30 1 9.6833 -5.2498 0.9158 31 1 11.6742 -3.7652 0.8927 32 1 11.4401 -1.4710 -0.0332 33 1 9.2610 -0.7362 -0.9079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356066394.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:11 Heat of formation + Delta-G solvation = 57.573203 kcal Electronic energy + Delta-G solvation = -19658.924565 eV Core-core repulsion = 16492.604061 eV Total energy + Delta-G solvation = -3166.320505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.19320 -40.68749 -39.78721 -35.98253 -34.36289 -33.90684 -33.29373 -31.72835 -31.02622 -29.43782 -25.29865 -24.80782 -24.36182 -23.13532 -21.50810 -20.90665 -19.71429 -18.64104 -17.67500 -17.18259 -16.95678 -16.71484 -16.47826 -16.24486 -15.77588 -15.46445 -14.99295 -14.73576 -14.63614 -14.26877 -14.10031 -13.87537 -13.53971 -13.02702 -12.66640 -12.65901 -12.19182 -11.90214 -11.59464 -11.26877 -10.87463 -10.80882 -10.60799 -10.04904 -9.98210 -9.72919 -9.47211 -8.36464 -6.41901 -0.20277 0.46128 0.58379 1.23320 1.34999 1.36928 1.50647 1.68298 2.31713 2.59779 2.62763 2.99627 3.03516 3.08646 3.57230 3.86968 4.07747 4.12435 4.23729 4.25330 4.42583 4.49678 4.66517 4.84970 4.91032 5.09677 5.11830 5.22688 5.29643 5.32977 5.67083 5.82032 6.16379 6.18286 6.40356 6.58878 7.04193 7.21144 7.22786 7.66336 8.78142 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020685 B = 0.005025 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.335365 B = 5570.415437 C = 6860.061951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.028 3.972 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.263 1.263 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.239 3.761 10 N -0.708 5.708 11 C 0.566 3.434 12 O -0.554 6.554 13 C -0.294 4.294 14 C 0.133 3.867 15 N -0.439 5.439 16 H 0.465 0.535 17 N -0.284 5.284 18 C 0.150 3.850 19 C 0.152 3.848 20 C -0.144 4.144 21 C -0.080 4.080 22 C -0.153 4.153 23 C 0.075 3.925 24 N -0.455 5.455 25 H 0.271 0.729 26 H 0.007 0.993 27 H 0.007 0.993 28 H 0.403 0.597 29 H 0.232 0.768 30 H 0.150 0.850 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.028 -12.995 1.025 23.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.115 3.885 10 N -0.359 5.359 11 C 0.354 3.646 12 O -0.432 6.432 13 C -0.309 4.309 14 C -0.018 4.018 15 N -0.148 5.148 16 H 0.314 0.686 17 N -0.108 5.108 18 C -0.018 4.018 19 C 0.014 3.986 20 C -0.166 4.166 21 C -0.106 4.106 22 C -0.173 4.173 23 C -0.084 4.084 24 N -0.164 5.164 25 H 0.081 0.919 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.239 0.761 29 H 0.248 0.752 30 H 0.168 0.832 31 H 0.194 0.806 32 H 0.190 0.810 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 19.298 -12.992 0.695 23.274 hybrid contribution -0.546 0.645 0.246 0.880 sum 18.752 -12.347 0.941 22.472 Atomic orbital electron populations 1.69973 1.07552 1.28478 1.51076 1.25538 0.95484 1.02461 0.93723 0.85903 0.79253 0.79644 0.79369 1.19118 1.19829 1.18735 1.21303 0.89866 0.94635 1.52121 0.91893 1.18986 0.93186 0.81062 0.95242 1.45781 1.05998 1.09323 1.74831 1.17687 0.82071 0.88211 0.76680 1.90795 1.55423 1.46215 1.50739 1.21369 0.92684 0.93541 1.23351 1.23568 0.99005 0.85537 0.93674 1.45907 1.02410 1.09995 1.56502 0.68561 1.77135 0.98780 1.09765 1.25092 1.21549 0.91978 0.90280 0.97998 1.18690 0.90616 0.90309 0.98937 1.22290 0.92370 1.02080 0.99823 1.21950 0.99382 0.93050 0.96197 1.22649 0.99183 0.97734 0.97729 1.23139 0.88498 0.99561 0.97207 1.67818 1.32038 1.02726 1.13864 0.91937 0.97464 0.97520 0.76120 0.75228 0.83187 0.80578 0.81034 0.82223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.91 13.96 21.45 0.30 -55.61 16 2 C 0.03 1.60 5.47 84.65 0.46 2.07 16 3 Si 0.93 45.10 27.47 68.60 1.88 46.99 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -12.75 6.54 99.48 0.65 -12.10 16 7 C -0.54 -30.21 9.83 25.60 0.25 -29.96 16 8 H 0.06 3.62 7.84 -2.91 -0.02 3.60 16 9 C 0.24 12.19 4.50 85.63 0.38 12.58 16 10 N -0.71 -29.91 5.54 -470.23 -2.60 -32.51 16 11 C 0.57 24.04 7.81 86.63 0.68 24.72 16 12 O -0.55 -27.55 13.67 -4.07 -0.06 -27.60 16 13 C -0.29 -9.83 6.31 -18.78 -0.12 -9.95 16 14 C 0.13 2.86 11.50 84.26 0.97 3.83 16 15 N -0.44 -8.00 7.20 -56.43 -0.41 -8.40 16 16 H 0.46 4.02 8.96 -213.53 -1.91 2.11 16 17 N -0.28 -7.49 12.53 -44.55 -0.56 -8.05 16 18 C 0.15 4.92 7.11 44.06 0.31 5.24 16 19 C 0.15 5.06 6.63 41.95 0.28 5.34 16 20 C -0.14 -3.52 9.75 22.58 0.22 -3.30 16 21 C -0.08 -1.47 10.17 22.44 0.23 -1.24 16 22 C -0.15 -3.00 10.11 22.41 0.23 -2.78 16 23 C 0.07 2.14 11.17 84.71 0.95 3.09 16 24 N -0.45 -16.92 7.06 -184.89 -1.31 -18.22 16 25 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 26 H 0.01 0.40 7.20 -2.39 -0.02 0.38 16 27 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 28 H 0.40 14.23 7.27 -92.71 -0.67 13.56 16 29 H 0.23 2.94 7.48 -2.91 -0.02 2.92 16 30 H 0.15 3.05 8.04 -2.91 -0.02 3.03 16 31 H 0.18 1.68 8.06 -2.91 -0.02 1.65 16 32 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.16 4.13 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -82.07 295.39 0.62 -81.44 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -1.47 Total: 12.32 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 4.84 Total: 9.64 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -4.58 Total: -122.80 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.06 Total: -27.60 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.99 kcal Total: -82.07 0.62 -81.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356066394.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.017 kcal (2) G-P(sol) polarization free energy of solvation -82.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds