Wall clock time and date at job start Mon Mar 30 2020 01:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34392 * 126.76330 * 2 1 4 4 N 1.30845 * 108.20853 * 180.02562 * 3 2 1 5 5 C 1.33658 * 109.77820 * 359.97438 * 4 3 2 6 6 N 1.39744 * 125.60330 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99996 * 0.29527 * 6 5 4 8 8 O 1.21599 * 120.00259 * 359.73239 * 7 6 5 9 9 C 1.47586 * 119.99806 * 179.72859 * 7 6 5 10 10 C 1.40045 * 119.89717 * 359.72227 * 9 7 6 11 11 C 1.36302 * 120.10041 * 179.75743 * 10 9 7 12 12 C 1.40897 * 119.89673 * 0.52253 * 11 10 9 13 13 C 1.41098 * 120.10297 * 179.71359 * 12 11 10 14 14 H 1.07996 * 119.99819 * 204.66276 * 13 12 11 15 15 C 1.40232 * 119.99677 * 24.65568 * 13 12 11 16 16 N 1.30639 * 120.00237 * 17.87144 * 15 13 12 17 17 Si 1.86805 * 119.99798 * 197.86530 * 15 13 12 18 18 H 1.48495 * 109.46764 * 90.00351 * 17 15 13 19 19 H 1.48499 * 109.46972 * 210.00348 * 17 15 13 20 20 H 1.48497 * 109.46914 * 330.00787 * 17 15 13 21 21 C 1.40901 * 119.79771 * 359.73705 * 12 11 10 22 22 C 1.36305 * 119.89125 * 359.97438 * 21 12 11 23 23 N 1.31195 * 108.78694 * 0.22895 * 5 4 3 24 24 H 1.09003 * 109.47700 * 90.00561 * 1 2 3 25 25 H 1.09006 * 109.47068 * 210.00109 * 1 2 3 26 26 H 1.09000 * 109.47500 * 329.99991 * 1 2 3 27 27 H 1.07994 * 125.89259 * 359.97438 * 3 2 1 28 28 H 0.97003 * 120.00013 * 180.02562 * 6 5 4 29 29 H 1.07994 * 119.94828 * 0.02625 * 10 9 7 30 30 H 1.08001 * 120.05251 * 180.22981 * 11 10 9 31 31 H 0.97001 * 120.00444 * 179.97438 * 16 15 13 32 32 H 1.07997 * 120.05187 * 179.97438 * 21 12 11 33 33 H 1.07998 * 119.94713 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.0766 0.0000 4 7 3.5097 0.6603 -0.0006 5 6 3.5383 -0.6760 -0.0004 6 7 4.6916 -1.4651 -0.0013 7 6 5.9069 -0.8823 0.0034 8 8 5.9998 0.3301 0.0037 9 6 7.1249 -1.7158 0.0085 10 6 7.0154 -3.1119 0.0142 11 6 8.1375 -3.8856 0.0139 12 6 9.4090 -3.2787 0.0189 13 6 10.5735 -4.0754 0.0247 14 1 11.4974 -3.6785 0.4187 15 6 10.5310 -5.3827 -0.4810 16 7 9.5495 -5.7498 -1.2611 17 14 11.8781 -6.5992 -0.0393 18 1 11.4989 -7.3304 1.1963 19 1 12.0560 -7.5664 -1.1520 20 1 13.1501 -5.8678 0.1890 21 6 9.5142 -1.8736 0.0187 22 6 8.3865 -1.1080 0.0130 23 7 2.3055 -1.1249 -0.0046 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.9474 2.1075 -0.0004 28 1 4.6175 -2.4323 -0.0015 29 1 6.0403 -3.5762 0.0145 30 1 8.0521 -4.9622 0.0145 31 1 9.5203 -6.6539 -1.6112 32 1 10.4868 -1.4041 0.0230 33 1 8.4661 -0.0310 0.0133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356432802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:26 Heat of formation + Delta-G solvation = 87.195940 kcal Electronic energy + Delta-G solvation = -19271.231083 eV Core-core repulsion = 16106.195117 eV Total energy + Delta-G solvation = -3165.035966 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.92536 -39.08383 -37.15495 -34.74616 -33.91385 -33.10502 -30.91836 -30.09593 -29.47207 -27.10057 -25.88915 -22.93877 -22.11006 -21.19951 -20.73178 -19.41407 -17.65524 -17.47749 -16.74423 -16.03402 -15.70157 -15.44296 -14.58510 -14.28548 -14.01589 -13.93425 -13.34342 -13.20113 -13.12229 -12.79895 -12.13973 -11.97153 -11.68538 -11.41212 -11.31241 -11.00368 -10.76228 -10.52999 -10.08900 -9.81597 -9.69700 -9.58809 -9.38250 -8.94567 -8.36209 -7.75594 -7.58224 -7.06835 -4.63662 1.65238 2.18578 2.21361 2.87931 2.94252 2.97259 3.01679 3.18722 3.33756 3.72241 3.95140 4.40645 4.55622 4.56219 4.92178 5.14900 5.19292 5.53991 5.66912 5.96029 6.02598 6.29497 6.38263 6.74690 6.77581 6.79841 6.94379 7.07261 7.13196 7.39071 7.49945 7.69766 7.82872 7.88397 8.03921 8.36462 8.47918 8.59674 8.71682 8.97608 9.84917 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.044544 B = 0.003463 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.441132 B = 8082.484423 C = 8630.671322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.391 5.391 3 C 0.262 3.738 4 N -0.517 5.517 5 C 0.463 3.537 6 N -0.635 5.635 7 C 0.569 3.431 8 O -0.514 6.514 9 C -0.283 4.283 10 C -0.063 4.063 11 C -0.177 4.177 12 C 0.129 3.871 13 C -0.439 4.439 14 H 0.086 0.914 15 C 0.074 3.926 16 N -0.768 5.768 17 Si 0.915 3.085 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.238 4.238 22 C -0.017 4.017 23 N -0.357 5.357 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.219 0.781 28 H 0.419 0.581 29 H 0.090 0.910 30 H 0.122 0.878 31 H 0.288 0.712 32 H 0.100 0.900 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.099 4.032 1.624 13.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.184 5.184 3 C -0.036 4.036 4 N -0.247 5.247 5 C 0.094 3.906 6 N -0.290 5.290 7 C 0.364 3.636 8 O -0.388 6.388 9 C -0.288 4.288 10 C -0.082 4.082 11 C -0.196 4.196 12 C 0.126 3.874 13 C -0.466 4.466 14 H 0.104 0.896 15 C -0.148 4.148 16 N -0.391 5.391 17 Si 0.738 3.262 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.182 1.182 21 C -0.257 4.257 22 C -0.036 4.036 23 N -0.194 5.194 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.236 0.764 28 H 0.258 0.742 29 H 0.108 0.892 30 H 0.139 0.861 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.984 4.156 1.459 13.711 hybrid contribution 0.080 -0.959 0.018 0.963 sum -12.904 3.196 1.478 13.376 Atomic orbital electron populations 1.21843 0.74062 1.04582 1.03451 1.50090 1.07491 1.03887 1.56918 1.26150 0.85280 0.95587 0.96606 1.70692 1.19359 1.09401 1.25280 1.20549 0.86681 0.87640 0.95713 1.42994 1.01663 1.09606 1.74752 1.18831 0.81864 0.88115 0.74817 1.90760 1.85775 1.14078 1.48200 1.18701 0.90820 0.92519 1.26715 1.20491 0.97213 0.92290 0.98212 1.20973 0.91499 0.99598 1.07506 1.17810 0.93134 0.91299 0.85160 1.19894 0.97203 0.96437 1.33092 0.89555 1.26126 0.97043 0.99211 0.92439 1.69737 1.29517 1.19962 1.19914 0.86184 0.81119 0.79555 0.79295 1.18887 1.19988 1.18233 1.20711 0.96518 0.93809 1.14707 1.20347 0.91226 0.98184 0.93840 1.78169 0.99621 1.06667 1.34971 0.90621 0.89304 0.89136 0.76448 0.74221 0.89242 0.86068 0.90116 0.88184 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.64 11.52 59.84 0.69 1.33 16 2 N -0.39 -4.82 4.03 -69.45 -0.28 -5.10 16 3 C 0.26 3.35 12.65 -90.68 -1.15 2.20 16 4 N -0.52 -9.71 9.37 -14.94 -0.14 -9.85 16 5 C 0.46 8.86 8.80 -320.97 -2.83 6.03 16 6 N -0.64 -12.42 5.38 -13.76 -0.07 -12.50 16 7 C 0.57 12.86 7.73 -12.44 -0.10 12.76 16 8 O -0.51 -12.89 14.99 5.28 0.08 -12.81 16 9 C -0.28 -6.54 5.89 -104.73 -0.62 -7.15 16 10 C -0.06 -1.40 9.47 -39.60 -0.38 -1.77 16 11 C -0.18 -4.30 8.63 -39.27 -0.34 -4.64 16 12 C 0.13 3.26 5.58 -106.80 -0.60 2.67 16 13 C -0.44 -10.78 9.04 -37.75 -0.34 -11.13 16 14 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 15 C 0.07 1.69 5.14 -17.31 -0.09 1.61 16 16 N -0.77 -18.22 10.95 55.56 0.61 -17.61 16 17 Si 0.91 17.09 29.60 -169.99 -5.03 12.06 16 18 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 19 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 21 C -0.24 -5.71 9.73 -39.27 -0.38 -6.09 16 22 C -0.02 -0.39 9.52 -39.60 -0.38 -0.77 16 23 N -0.36 -5.96 12.72 30.02 0.38 -5.57 16 24 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.22 1.54 8.06 -52.49 -0.42 1.11 16 28 H 0.42 7.17 6.82 -40.82 -0.28 6.89 16 29 H 0.09 1.69 6.37 -52.49 -0.33 1.36 16 30 H 0.12 2.98 6.16 -52.49 -0.32 2.65 16 31 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 32 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 LS Contribution 295.80 15.07 4.46 4.46 Total: -1.00 -32.82 295.80 -9.49 -42.31 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -3.00 Total: 9.57 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -6.50 Total: -4.96 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.50 Total: -50.64 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.82 -9.49 -42.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356432802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.506 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds