Wall clock time and date at job start Mon Mar 30 2020 01:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34392 * 126.76330 * 2 1 4 4 N 1.30845 * 108.20853 * 180.02562 * 3 2 1 5 5 C 1.33658 * 109.77820 * 359.97438 * 4 3 2 6 6 N 1.39744 * 125.60330 * 179.97438 * 5 4 3 7 7 C 1.34781 * 119.99996 * 0.29527 * 6 5 4 8 8 O 1.21599 * 120.00259 * 359.73239 * 7 6 5 9 9 C 1.47586 * 119.99806 * 179.72859 * 7 6 5 10 10 C 1.40045 * 119.89717 * 359.72227 * 9 7 6 11 11 C 1.36302 * 120.10041 * 179.75743 * 10 9 7 12 12 C 1.40897 * 119.89673 * 0.52253 * 11 10 9 13 13 C 1.41098 * 120.10297 * 179.71359 * 12 11 10 14 14 H 1.07996 * 119.99819 * 204.66276 * 13 12 11 15 15 C 1.40232 * 119.99677 * 24.65568 * 13 12 11 16 16 N 1.30639 * 120.00237 * 17.87144 * 15 13 12 17 17 Si 1.86805 * 119.99798 * 197.86530 * 15 13 12 18 18 H 1.48495 * 109.46764 * 90.00351 * 17 15 13 19 19 H 1.48499 * 109.46972 * 210.00348 * 17 15 13 20 20 H 1.48497 * 109.46914 * 330.00787 * 17 15 13 21 21 C 1.40901 * 119.79771 * 359.73705 * 12 11 10 22 22 C 1.36305 * 119.89125 * 359.97438 * 21 12 11 23 23 N 1.31195 * 108.78694 * 0.22895 * 5 4 3 24 24 H 1.09003 * 109.47700 * 90.00561 * 1 2 3 25 25 H 1.09006 * 109.47068 * 210.00109 * 1 2 3 26 26 H 1.09000 * 109.47500 * 329.99991 * 1 2 3 27 27 H 1.07994 * 125.89259 * 359.97438 * 3 2 1 28 28 H 0.97003 * 120.00013 * 180.02562 * 6 5 4 29 29 H 1.07994 * 119.94828 * 0.02625 * 10 9 7 30 30 H 1.08001 * 120.05251 * 180.22981 * 11 10 9 31 31 H 0.97001 * 120.00444 * 179.97438 * 16 15 13 32 32 H 1.07997 * 120.05187 * 179.97438 * 21 12 11 33 33 H 1.07998 * 119.94713 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.0766 0.0000 4 7 3.5097 0.6603 -0.0006 5 6 3.5383 -0.6760 -0.0004 6 7 4.6916 -1.4651 -0.0013 7 6 5.9069 -0.8823 0.0034 8 8 5.9998 0.3301 0.0037 9 6 7.1249 -1.7158 0.0085 10 6 7.0154 -3.1119 0.0142 11 6 8.1375 -3.8856 0.0139 12 6 9.4090 -3.2787 0.0189 13 6 10.5735 -4.0754 0.0247 14 1 11.4974 -3.6785 0.4187 15 6 10.5310 -5.3827 -0.4810 16 7 9.5495 -5.7498 -1.2611 17 14 11.8781 -6.5992 -0.0393 18 1 11.4989 -7.3304 1.1963 19 1 12.0560 -7.5664 -1.1520 20 1 13.1501 -5.8678 0.1890 21 6 9.5142 -1.8736 0.0187 22 6 8.3865 -1.1080 0.0130 23 7 2.3055 -1.1249 -0.0046 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.9474 2.1075 -0.0004 28 1 4.6175 -2.4323 -0.0015 29 1 6.0403 -3.5762 0.0145 30 1 8.0521 -4.9622 0.0145 31 1 9.5203 -6.6539 -1.6112 32 1 10.4868 -1.4041 0.0230 33 1 8.4661 -0.0310 0.0133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356432802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:25 Heat of formation + Delta-G solvation = 69.058787 kcal Electronic energy + Delta-G solvation = -19272.017569 eV Core-core repulsion = 16106.195117 eV Total energy + Delta-G solvation = -3165.822452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.09262 -40.78486 -38.94078 -36.16181 -35.69918 -34.26909 -32.31425 -31.69861 -31.31107 -28.26290 -27.36307 -24.53356 -23.23562 -22.92457 -22.34454 -20.96921 -19.39083 -18.94735 -18.14072 -17.23061 -17.15037 -16.84880 -15.98508 -15.75988 -15.72712 -15.31929 -15.04766 -14.51209 -14.07992 -13.93177 -13.92482 -13.69921 -13.23517 -12.87212 -12.68002 -12.63905 -12.39234 -11.90843 -11.77659 -11.38658 -11.22064 -11.11186 -10.85859 -10.58691 -9.72581 -9.58561 -9.41759 -8.81019 -6.50073 0.26415 0.68376 1.14933 1.17419 1.39217 1.43334 1.54694 1.80090 2.11766 2.16633 2.31005 2.79095 3.42851 3.67456 3.79482 4.11434 4.27339 4.43514 4.47400 4.51469 4.60364 4.75838 4.92301 5.01549 5.13108 5.24812 5.27028 5.55900 5.61053 5.74895 5.86467 5.97867 6.00901 6.20062 6.28804 6.52151 6.75106 6.86329 7.16192 7.34545 8.13965 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.044544 B = 0.003463 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.441132 B = 8082.484423 C = 8630.671322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.380 5.380 3 C 0.275 3.725 4 N -0.576 5.576 5 C 0.433 3.567 6 N -0.629 5.629 7 C 0.574 3.426 8 O -0.545 6.545 9 C -0.292 4.292 10 C -0.054 4.054 11 C -0.196 4.196 12 C 0.103 3.897 13 C -0.467 4.467 14 H 0.089 0.911 15 C 0.037 3.963 16 N -0.795 5.795 17 Si 0.989 3.011 18 H -0.259 1.259 19 H -0.265 1.265 20 H -0.256 1.256 21 C -0.250 4.250 22 C -0.025 4.025 23 N -0.369 5.369 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.133 0.867 27 H 0.274 0.726 28 H 0.427 0.573 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.298 0.702 32 H 0.109 0.891 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.801 3.896 1.770 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.172 5.172 3 C -0.021 4.021 4 N -0.308 5.308 5 C 0.064 3.936 6 N -0.284 5.284 7 C 0.367 3.633 8 O -0.421 6.421 9 C -0.297 4.297 10 C -0.073 4.073 11 C -0.215 4.215 12 C 0.100 3.900 13 C -0.494 4.494 14 H 0.107 0.893 15 C -0.183 4.183 16 N -0.418 5.418 17 Si 0.809 3.191 18 H -0.183 1.183 19 H -0.190 1.190 20 H -0.180 1.180 21 C -0.270 4.270 22 C -0.044 4.044 23 N -0.207 5.207 24 H 0.112 0.888 25 H 0.109 0.891 26 H 0.151 0.849 27 H 0.289 0.711 28 H 0.267 0.733 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.777 4.014 1.600 15.396 hybrid contribution 0.358 -0.836 -0.056 0.912 sum -14.419 3.178 1.544 14.846 Atomic orbital electron populations 1.22397 0.70305 1.06813 1.05332 1.50470 1.09260 1.02612 1.54890 1.27047 0.83699 0.97441 0.93922 1.70583 1.22993 1.09579 1.27671 1.20631 0.86838 0.88138 0.97973 1.42610 1.01487 1.10066 1.74214 1.18641 0.82568 0.87540 0.74501 1.90727 1.86460 1.15157 1.49768 1.18900 0.91180 0.93083 1.26519 1.20723 0.98187 0.91902 0.96504 1.21005 0.91968 0.99490 1.09065 1.18160 0.94019 0.91971 0.85862 1.20175 0.97226 0.97836 1.34117 0.89326 1.26966 0.99401 1.00250 0.91634 1.69758 1.30971 1.20969 1.20071 0.85078 0.77881 0.76943 0.79196 1.18337 1.18961 1.17994 1.20858 0.97132 0.93747 1.15228 1.20483 0.91612 0.98414 0.93931 1.78041 0.99188 1.09138 1.34315 0.88849 0.89136 0.84911 0.71076 0.73292 0.86115 0.86639 0.89054 0.87322 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.52 127.77 1.47 2.25 16 2 N -0.38 -8.31 4.03 -373.64 -1.51 -9.82 16 3 C 0.28 6.30 12.65 180.37 2.28 8.58 16 4 N -0.58 -21.23 9.37 -201.19 -1.88 -23.11 16 5 C 0.43 16.45 8.80 260.84 2.30 18.75 16 6 N -0.63 -24.79 5.38 -315.72 -1.70 -26.49 16 7 C 0.57 26.37 7.73 86.71 0.67 27.04 16 8 O -0.54 -27.91 14.99 -4.03 -0.06 -27.97 16 9 C -0.29 -13.77 5.89 -19.94 -0.12 -13.88 16 10 C -0.05 -2.44 9.47 22.26 0.21 -2.23 16 11 C -0.20 -9.74 8.63 22.47 0.19 -9.54 16 12 C 0.10 5.34 5.58 -21.27 -0.12 5.22 16 13 C -0.47 -23.32 9.04 23.46 0.21 -23.11 16 14 H 0.09 4.23 7.91 -2.91 -0.02 4.20 16 15 C 0.04 1.70 5.14 85.35 0.44 2.14 16 16 N -0.79 -37.76 10.95 21.87 0.24 -37.52 16 17 Si 0.99 34.44 29.60 68.60 2.03 36.47 16 18 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 19 H -0.27 -8.76 7.11 99.48 0.71 -8.05 16 20 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 21 C -0.25 -12.38 9.73 22.47 0.22 -12.16 16 22 C -0.03 -1.22 9.52 22.26 0.21 -1.01 16 23 N -0.37 -11.85 12.72 -58.94 -0.75 -12.60 16 24 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.27 2.60 8.06 -2.91 -0.02 2.57 16 28 H 0.43 14.62 6.82 -92.71 -0.63 13.99 16 29 H 0.12 4.51 6.37 -2.91 -0.02 4.50 16 30 H 0.12 5.79 6.16 -2.91 -0.02 5.77 16 31 H 0.30 12.57 8.29 -92.71 -0.77 11.80 16 32 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 33 H 0.11 5.00 7.63 -2.91 -0.02 4.97 16 Total: -1.00 -73.86 295.80 4.87 -68.99 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.53 Total: 30.00 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 7.97 Total: 2.05 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -5.60 Total: -109.54 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.06 Total: -27.97 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -73.86 4.87 -68.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356432802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.047 kcal (2) G-P(sol) polarization free energy of solvation -73.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds