Wall clock time and date at job start Mon Mar 30 2020 01:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34376 * 126.76685 * 2 1 4 4 N 1.30858 * 108.20779 * 179.97438 * 3 2 1 5 5 C 1.33642 * 109.77897 * 359.97438 * 4 3 2 6 6 N 1.39781 * 125.60563 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00135 * 0.02828 * 6 5 4 8 8 O 1.21556 * 119.99736 * 0.02562 * 7 6 5 9 9 C 1.47855 * 119.99930 * 180.27318 * 7 6 5 10 10 C 1.39933 * 120.02747 * 359.45157 * 9 7 6 11 11 C 1.38318 * 120.35350 * 179.73868 * 10 9 7 12 12 C 1.37754 * 120.41507 * 0.56030 * 11 10 9 13 13 C 1.40752 * 120.04579 * 359.69616 * 12 11 10 14 14 C 1.41437 * 120.17925 * 180.02562 * 13 12 11 15 15 H 1.07992 * 119.99875 * 24.43825 * 14 13 12 16 16 C 1.39935 * 119.99719 * 204.43516 * 14 13 12 17 17 N 1.30832 * 120.00084 * 17.88410 * 16 14 13 18 18 Si 1.86796 * 119.99929 * 197.88045 * 16 14 13 19 19 H 1.48500 * 109.47102 * 90.00509 * 18 16 14 20 20 H 1.48500 * 109.47066 * 210.00349 * 18 16 14 21 21 H 1.48500 * 109.46986 * 330.00183 * 18 16 14 22 22 C 1.39008 * 120.02317 * 179.72436 * 9 7 6 23 23 N 1.31186 * 108.78775 * 0.24971 * 5 4 3 24 24 H 1.08999 * 109.46817 * 90.00206 * 1 2 3 25 25 H 1.09003 * 109.47176 * 210.00011 * 1 2 3 26 26 H 1.08997 * 109.47189 * 330.00215 * 1 2 3 27 27 H 1.08004 * 125.89620 * 359.95333 * 3 2 1 28 28 H 0.97001 * 119.99920 * 180.02562 * 6 5 4 29 29 H 1.08000 * 119.82076 * 359.97438 * 10 9 7 30 30 H 1.08007 * 119.79523 * 180.25130 * 11 10 9 31 31 H 1.07999 * 119.97916 * 179.71956 * 12 11 10 32 32 H 0.97001 * 119.99659 * 179.97438 * 17 16 14 33 33 H 1.08006 * 120.20590 * 359.95498 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.0765 0.0000 4 7 3.5099 0.6600 0.0006 5 6 3.5383 -0.6762 0.0015 6 7 4.6919 -1.4656 0.0018 7 6 5.9072 -0.8830 0.0017 8 8 6.0001 0.3291 0.0018 9 6 7.1273 -1.7180 -0.0041 10 6 7.0210 -3.1133 0.0021 11 6 8.1579 -3.9010 -0.0087 12 6 9.4077 -3.3216 -0.0141 13 6 9.5347 -1.9199 -0.0151 14 6 10.8165 -1.3220 -0.0212 15 1 11.6639 -1.8656 -0.4119 16 6 10.9865 -0.0263 0.4790 17 7 10.0755 0.4993 1.2572 18 14 12.5141 0.9531 0.0357 19 1 12.2606 1.7318 -1.2031 20 1 12.8457 1.8824 1.1455 21 1 13.6504 0.0235 -0.1878 22 6 8.3811 -1.1176 -0.0101 23 7 2.3056 -1.1250 -0.0039 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9475 2.1074 -0.0007 28 1 4.6177 -2.4327 0.0021 29 1 6.0459 -3.5776 0.0115 30 1 8.0653 -4.9771 -0.0079 31 1 10.2907 -3.9434 -0.0180 32 1 10.1936 1.3974 1.6042 33 1 8.4680 -0.0410 -0.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356433805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:28 Heat of formation + Delta-G solvation = 91.788062 kcal Electronic energy + Delta-G solvation = -19523.119117 eV Core-core repulsion = 16358.282280 eV Total energy + Delta-G solvation = -3164.836837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.96637 -39.19928 -37.05773 -34.82044 -33.78495 -33.10579 -30.94462 -30.05389 -29.45466 -26.98940 -25.34591 -23.52074 -22.19170 -21.16526 -20.74473 -19.38611 -17.83288 -17.45124 -16.28116 -16.07005 -15.59458 -15.19653 -14.77875 -14.37193 -14.30762 -13.86257 -13.35373 -13.19373 -13.16398 -12.72982 -12.52667 -11.71840 -11.67726 -11.20462 -11.11494 -10.79423 -10.62998 -10.48913 -10.10040 -9.80940 -9.72567 -9.70583 -9.22423 -9.02004 -8.42088 -7.67010 -7.54431 -6.80837 -4.42437 1.61010 2.16435 2.16867 2.79971 3.08624 3.11010 3.12036 3.18835 3.25355 3.91625 3.96187 4.38274 4.53842 4.63139 4.90579 5.12175 5.15446 5.53628 5.58254 5.79882 6.05832 6.25454 6.34698 6.67788 6.74317 6.90038 6.97963 7.04796 7.19762 7.34738 7.47940 7.68615 7.81111 7.94111 8.14706 8.40497 8.48915 8.77960 8.80878 8.84460 10.13908 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.004302 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.857106 B = 6506.578618 C = 7440.916601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.390 5.390 3 C 0.264 3.736 4 N -0.517 5.517 5 C 0.462 3.538 6 N -0.632 5.632 7 C 0.562 3.438 8 O -0.482 6.482 9 C -0.123 4.123 10 C -0.220 4.220 11 C -0.095 4.095 12 C -0.211 4.211 13 C 0.099 3.901 14 C -0.458 4.458 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.781 5.781 18 Si 0.912 3.088 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.088 4.088 23 N -0.355 5.355 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.220 0.780 28 H 0.421 0.579 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.286 0.714 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.744 0.175 -1.550 14.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.183 5.183 3 C -0.034 4.034 4 N -0.247 5.247 5 C 0.093 3.907 6 N -0.288 5.288 7 C 0.352 3.648 8 O -0.351 6.351 9 C -0.127 4.127 10 C -0.240 4.240 11 C -0.113 4.113 12 C -0.231 4.231 13 C 0.097 3.903 14 C -0.487 4.487 15 H 0.101 0.899 16 C -0.147 4.147 17 N -0.405 5.405 18 Si 0.736 3.264 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.108 4.108 23 N -0.192 5.192 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.237 0.763 28 H 0.260 0.740 29 H 0.109 0.891 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.585 0.749 -1.396 14.671 hybrid contribution 0.183 0.131 -0.049 0.230 sum -14.402 0.880 -1.445 14.501 Atomic orbital electron populations 1.21854 0.73979 1.04639 1.03478 1.50100 1.07523 1.03854 1.56818 1.26165 0.85178 0.95628 0.96409 1.70698 1.19496 1.09321 1.25205 1.20512 0.86611 0.87669 0.95947 1.42972 1.01597 1.09736 1.74489 1.19102 0.82153 0.88375 0.75192 1.90821 1.85633 1.13855 1.44827 1.19285 0.91464 0.92769 1.09176 1.20349 0.96704 0.92078 1.14915 1.20428 0.92917 0.97316 1.00626 1.21116 0.95569 0.94822 1.11547 1.17587 0.93122 0.90835 0.88788 1.19607 0.94763 0.98630 1.35713 0.89950 1.25981 0.98230 0.97821 0.92639 1.69785 1.33664 1.15879 1.21188 0.86250 0.81340 0.79608 0.79211 1.19098 1.20206 1.18578 1.21645 0.89258 1.00977 0.98951 1.78149 0.99548 1.06734 1.34771 0.90582 0.89280 0.89076 0.76328 0.74012 0.89139 0.88708 0.88481 0.90317 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.53 59.85 0.69 1.32 16 2 N -0.39 -4.76 4.03 -69.45 -0.28 -5.04 16 3 C 0.26 3.41 12.65 -90.68 -1.15 2.27 16 4 N -0.52 -9.84 9.37 -14.94 -0.14 -9.98 16 5 C 0.46 8.78 8.80 -320.94 -2.83 5.95 16 6 N -0.63 -12.25 5.38 -13.69 -0.07 -12.32 16 7 C 0.56 13.04 7.74 -12.32 -0.10 12.95 16 8 O -0.48 -12.70 15.00 5.32 0.08 -12.62 16 9 C -0.12 -2.95 5.87 -105.04 -0.62 -3.57 16 10 C -0.22 -4.66 9.55 -38.92 -0.37 -5.03 16 11 C -0.09 -2.01 10.01 -39.73 -0.40 -2.40 16 12 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 13 C 0.10 2.61 5.57 -106.87 -0.60 2.02 16 14 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 15 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 16 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 17 N -0.78 -20.70 10.96 55.55 0.61 -20.10 16 18 Si 0.91 18.78 29.59 -169.99 -5.03 13.75 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 22 C -0.09 -2.36 8.24 -38.44 -0.32 -2.67 16 23 N -0.35 -5.81 12.72 30.02 0.38 -5.43 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.22 1.59 8.06 -52.48 -0.42 1.17 16 28 H 0.42 6.93 6.84 -40.82 -0.28 6.65 16 29 H 0.09 1.58 6.38 -52.49 -0.33 1.25 16 30 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.29 6.97 8.30 -40.82 -0.34 6.63 16 33 H 0.14 3.91 5.74 -52.48 -0.30 3.61 16 LS Contribution 296.06 15.07 4.46 4.46 Total: -1.00 -34.22 296.06 -9.48 -43.70 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -3.00 Total: 8.67 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -6.49 Total: -5.09 kcal Atomic # 7 Polarization: -53.37 SS G_CDS: 0.50 Total: -52.87 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -34.22 -9.48 -43.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356433805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.485 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds