Wall clock time and date at job start Mon Mar 30 2020 01:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34376 * 126.76685 * 2 1 4 4 N 1.30858 * 108.20779 * 179.97438 * 3 2 1 5 5 C 1.33642 * 109.77897 * 359.97438 * 4 3 2 6 6 N 1.39781 * 125.60563 * 179.97438 * 5 4 3 7 7 C 1.34778 * 120.00135 * 0.02828 * 6 5 4 8 8 O 1.21556 * 119.99736 * 0.02562 * 7 6 5 9 9 C 1.47855 * 119.99930 * 180.27318 * 7 6 5 10 10 C 1.39933 * 120.02747 * 359.45157 * 9 7 6 11 11 C 1.38318 * 120.35350 * 179.73868 * 10 9 7 12 12 C 1.37754 * 120.41507 * 0.56030 * 11 10 9 13 13 C 1.40752 * 120.04579 * 359.69616 * 12 11 10 14 14 C 1.41437 * 120.17925 * 180.02562 * 13 12 11 15 15 H 1.07992 * 119.99875 * 24.43825 * 14 13 12 16 16 C 1.39935 * 119.99719 * 204.43516 * 14 13 12 17 17 N 1.30832 * 120.00084 * 17.88410 * 16 14 13 18 18 Si 1.86796 * 119.99929 * 197.88045 * 16 14 13 19 19 H 1.48500 * 109.47102 * 90.00509 * 18 16 14 20 20 H 1.48500 * 109.47066 * 210.00349 * 18 16 14 21 21 H 1.48500 * 109.46986 * 330.00183 * 18 16 14 22 22 C 1.39008 * 120.02317 * 179.72436 * 9 7 6 23 23 N 1.31186 * 108.78775 * 0.24971 * 5 4 3 24 24 H 1.08999 * 109.46817 * 90.00206 * 1 2 3 25 25 H 1.09003 * 109.47176 * 210.00011 * 1 2 3 26 26 H 1.08997 * 109.47189 * 330.00215 * 1 2 3 27 27 H 1.08004 * 125.89620 * 359.95333 * 3 2 1 28 28 H 0.97001 * 119.99920 * 180.02562 * 6 5 4 29 29 H 1.08000 * 119.82076 * 359.97438 * 10 9 7 30 30 H 1.08007 * 119.79523 * 180.25130 * 11 10 9 31 31 H 1.07999 * 119.97916 * 179.71956 * 12 11 10 32 32 H 0.97001 * 119.99659 * 179.97438 * 17 16 14 33 33 H 1.08006 * 120.20590 * 359.95498 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2693 1.0765 0.0000 4 7 3.5099 0.6600 0.0006 5 6 3.5383 -0.6762 0.0015 6 7 4.6919 -1.4656 0.0018 7 6 5.9072 -0.8830 0.0017 8 8 6.0001 0.3291 0.0018 9 6 7.1273 -1.7180 -0.0041 10 6 7.0210 -3.1133 0.0021 11 6 8.1579 -3.9010 -0.0087 12 6 9.4077 -3.3216 -0.0141 13 6 9.5347 -1.9199 -0.0151 14 6 10.8165 -1.3220 -0.0212 15 1 11.6639 -1.8656 -0.4119 16 6 10.9865 -0.0263 0.4790 17 7 10.0755 0.4993 1.2572 18 14 12.5141 0.9531 0.0357 19 1 12.2606 1.7318 -1.2031 20 1 12.8457 1.8824 1.1455 21 1 13.6504 0.0235 -0.1878 22 6 8.3811 -1.1176 -0.0101 23 7 2.3056 -1.1250 -0.0039 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9475 2.1074 -0.0007 28 1 4.6177 -2.4327 0.0021 29 1 6.0459 -3.5776 0.0115 30 1 8.0653 -4.9771 -0.0079 31 1 10.2907 -3.9434 -0.0180 32 1 10.1936 1.3974 1.6042 33 1 8.4680 -0.0410 -0.0112 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356433805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:27 Heat of formation + Delta-G solvation = 71.475782 kcal Electronic energy + Delta-G solvation = -19523.999924 eV Core-core repulsion = 16358.282280 eV Total energy + Delta-G solvation = -3165.717643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.14419 -40.92550 -38.86512 -36.29257 -35.58632 -34.30812 -32.34365 -31.68488 -31.28768 -27.90862 -27.18244 -25.15713 -23.29605 -22.90512 -22.30946 -21.00538 -19.55894 -18.80138 -17.80562 -17.20451 -17.03659 -16.85207 -16.47869 -15.85741 -15.74704 -15.35781 -15.05540 -14.52336 -14.29878 -14.11257 -13.93096 -13.48460 -12.97984 -12.81781 -12.70385 -12.54865 -12.18569 -11.98175 -11.93117 -11.52255 -11.23730 -11.07964 -10.89413 -10.66694 -9.78515 -9.48544 -9.40397 -8.66457 -6.38131 0.17311 0.65823 1.00063 1.09734 1.38054 1.48600 1.52675 1.74243 2.02796 2.19804 2.29273 2.78572 3.35561 3.68278 3.72319 3.95012 4.35887 4.43792 4.49763 4.52426 4.60179 4.75497 4.89020 5.07411 5.15899 5.20984 5.29826 5.48353 5.52452 5.77563 5.87573 5.95581 6.03643 6.16730 6.29079 6.58159 6.87288 6.92959 7.04457 7.25762 8.30420 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.004302 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.857106 B = 6506.578618 C = 7440.916601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.378 5.378 3 C 0.276 3.724 4 N -0.581 5.581 5 C 0.431 3.569 6 N -0.620 5.620 7 C 0.564 3.436 8 O -0.525 6.525 9 C -0.133 4.133 10 C -0.200 4.200 11 C -0.092 4.092 12 C -0.213 4.213 13 C 0.069 3.931 14 C -0.495 4.495 15 H 0.087 0.913 16 C 0.029 3.971 17 N -0.824 5.824 18 Si 0.984 3.016 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.249 1.249 22 C -0.125 4.125 23 N -0.360 5.360 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.131 0.869 27 H 0.273 0.727 28 H 0.432 0.568 29 H 0.135 0.865 30 H 0.142 0.858 31 H 0.112 0.888 32 H 0.287 0.713 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 -0.874 -1.838 17.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.170 5.170 3 C -0.021 4.021 4 N -0.313 5.313 5 C 0.062 3.938 6 N -0.275 5.275 7 C 0.353 3.647 8 O -0.397 6.397 9 C -0.136 4.136 10 C -0.220 4.220 11 C -0.110 4.110 12 C -0.233 4.233 13 C 0.067 3.933 14 C -0.524 4.524 15 H 0.105 0.895 16 C -0.186 4.186 17 N -0.449 5.449 18 Si 0.805 3.195 19 H -0.192 1.192 20 H -0.194 1.194 21 H -0.173 1.173 22 C -0.146 4.146 23 N -0.198 5.198 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.150 0.850 27 H 0.288 0.712 28 H 0.274 0.726 29 H 0.152 0.848 30 H 0.160 0.840 31 H 0.130 0.870 32 H 0.098 0.902 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.868 -0.352 -1.686 16.956 hybrid contribution 0.503 0.338 0.028 0.606 sum -16.366 -0.015 -1.658 16.449 Atomic orbital electron populations 1.22421 0.70134 1.06882 1.05444 1.50499 1.09315 1.02545 1.54627 1.27017 0.83619 0.97489 0.93929 1.70590 1.23235 1.09857 1.27630 1.20590 0.86845 0.88045 0.98352 1.42509 1.01073 1.10295 1.73642 1.18981 0.83116 0.87735 0.74838 1.90786 1.86439 1.15533 1.46987 1.19514 0.90989 0.94374 1.08767 1.20856 0.99024 0.90718 1.11406 1.20920 0.91646 0.99717 0.98673 1.21446 0.97536 0.93870 1.10446 1.17928 0.93243 0.92376 0.89800 1.19887 0.95110 1.00002 1.37395 0.89522 1.26876 1.01334 0.98500 0.91889 1.69890 1.35947 1.16292 1.22797 0.85170 0.77558 0.78063 0.78753 1.19152 1.19449 1.17270 1.21436 0.90999 0.99653 1.02502 1.78022 0.98887 1.08980 1.33886 0.88682 0.88909 0.85036 0.71183 0.72637 0.84759 0.84035 0.86964 0.90233 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 11.53 127.77 1.47 2.20 16 2 N -0.38 -8.17 4.03 -373.63 -1.51 -9.67 16 3 C 0.28 6.51 12.65 180.37 2.28 8.79 16 4 N -0.58 -22.06 9.37 -201.18 -1.88 -23.95 16 5 C 0.43 16.28 8.80 260.84 2.30 18.58 16 6 N -0.62 -23.99 5.38 -315.49 -1.70 -25.69 16 7 C 0.56 26.99 7.74 86.79 0.67 27.66 16 8 O -0.52 -29.20 15.00 -3.89 -0.06 -29.26 16 9 C -0.13 -6.49 5.87 -20.14 -0.12 -6.61 16 10 C -0.20 -8.07 9.55 22.70 0.22 -7.85 16 11 C -0.09 -3.64 10.01 22.17 0.22 -3.42 16 12 C -0.21 -9.93 9.78 22.77 0.22 -9.71 16 13 C 0.07 3.76 5.57 -21.32 -0.12 3.64 16 14 C -0.49 -26.96 9.05 23.47 0.21 -26.75 16 15 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 16 C 0.03 1.54 5.14 85.25 0.44 1.97 16 17 N -0.82 -46.42 10.96 21.82 0.24 -46.18 16 18 Si 0.98 39.89 29.59 68.60 2.03 41.92 16 19 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 22 C -0.13 -7.06 8.24 23.01 0.19 -6.87 16 23 N -0.36 -11.22 12.72 -58.93 -0.75 -11.97 16 24 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.27 2.89 8.06 -2.91 -0.02 2.86 16 28 H 0.43 13.67 6.84 -92.71 -0.63 13.03 16 29 H 0.13 4.18 6.38 -2.91 -0.02 4.16 16 30 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 31 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 32 H 0.29 14.94 8.30 -92.71 -0.77 14.17 16 33 H 0.10 6.33 5.74 -2.91 -0.02 6.31 16 Total: -1.00 -81.33 296.06 4.89 -76.44 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.53 Total: 26.73 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 7.99 Total: 1.63 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -5.60 Total: -117.47 kcal Atomic # 8 Polarization: -29.20 SS G_CDS: -0.06 Total: -29.26 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -81.33 4.89 -76.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356433805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.919 kcal (2) G-P(sol) polarization free energy of solvation -81.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds