Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36783 * 120.00473 * 2 1 4 4 H 1.07996 * 120.00753 * 186.90763 * 3 2 1 5 5 C 1.39080 * 119.99571 * 6.90947 * 3 2 1 6 6 N 1.31351 * 120.00068 * 6.99076 * 5 3 2 7 7 Si 1.86801 * 119.99654 * 186.99015 * 5 3 2 8 8 H 1.48498 * 109.47374 * 60.00196 * 7 5 3 9 9 H 1.48503 * 109.46991 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47269 * 299.99677 * 7 5 3 11 11 C 1.34781 * 119.99797 * 179.97438 * 2 1 3 12 12 O 1.21714 * 120.00226 * 185.06215 * 11 2 1 13 13 C 1.46761 * 120.00193 * 5.06775 * 11 2 1 14 14 N 1.37152 * 127.36559 * 104.07063 * 13 11 2 15 15 H 0.97006 * 125.90644 * 359.96033 * 14 13 11 16 16 N 1.28615 * 108.19564 * 180.23169 * 14 13 11 17 17 N 1.28442 * 111.25478 * 359.60886 * 16 14 13 18 18 C 1.34177 * 109.41948 * 0.39747 * 17 16 14 19 19 C 1.48156 * 127.07194 * 179.74932 * 18 17 16 20 20 C 1.39464 * 120.13012 * 138.15866 * 19 18 17 21 21 C 1.37986 * 119.86434 * 179.69826 * 20 19 18 22 22 C 1.38345 * 120.12961 * 0.57538 * 21 20 19 23 23 C 1.38349 * 120.27149 * 359.72108 * 22 21 20 24 24 C 1.37980 * 120.13315 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47417 * 175.33633 * 1 2 3 26 26 H 1.09003 * 109.46858 * 295.33747 * 1 2 3 27 27 H 1.08994 * 109.46931 * 55.33290 * 1 2 3 28 28 H 0.97000 * 119.99814 * 180.02562 * 6 5 3 29 29 H 1.07999 * 120.06679 * 359.97438 * 20 19 18 30 30 H 1.07993 * 119.93533 * 180.31786 * 21 20 19 31 31 H 1.08006 * 119.86774 * 179.74590 * 22 21 20 32 32 H 1.08002 * 119.93373 * 180.02562 * 23 22 21 33 33 H 1.08001 * 120.06886 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1845 0.0000 4 1 3.2231 1.1880 -0.1125 5 6 1.4612 2.3846 0.1449 6 7 0.1765 2.3764 0.4187 7 14 2.3644 4.0081 -0.0498 8 1 2.9462 4.0905 -1.4136 9 1 1.4133 5.1308 0.1507 10 1 3.4516 4.0938 0.9581 11 6 2.1388 -1.1673 0.0005 12 8 3.3524 -1.1694 0.0935 13 6 1.4093 -2.4358 -0.1112 14 7 1.3055 -3.2418 -1.2160 15 1 1.7080 -3.0740 -2.0825 16 7 0.5775 -4.2559 -0.9064 17 7 0.1933 -4.1968 0.3178 18 6 0.6740 -3.0787 0.8828 19 6 0.4655 -2.6216 2.2765 20 6 1.5254 -2.0762 3.0004 21 6 1.3236 -1.6464 4.2960 22 6 0.0757 -1.7667 4.8811 23 6 -0.9782 -2.3125 4.1701 24 6 -0.7902 -2.7401 2.8718 25 1 -0.3634 -1.0242 -0.0836 26 1 -0.3633 0.4398 0.9288 27 1 -0.3633 0.5845 -0.8452 28 1 -0.3032 3.2134 0.5194 29 1 2.5012 -1.9863 2.5463 30 1 2.1423 -1.2192 4.8558 31 1 -0.0766 -1.4327 5.8968 32 1 -1.9502 -2.4034 4.6321 33 1 -1.6138 -3.1657 2.3176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357600854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = 98.549806 kcal Electronic energy + Delta-G solvation = -20746.217521 eV Core-core repulsion = 17581.673895 eV Total energy + Delta-G solvation = -3164.543626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.74864 -38.71320 -38.32029 -34.96140 -33.40471 -32.25308 -31.50107 -30.57927 -29.16337 -26.61427 -25.11913 -23.43411 -23.16808 -21.90805 -21.19886 -19.84225 -17.85694 -17.14483 -16.53676 -16.25620 -15.59579 -15.14436 -14.92372 -14.30689 -14.18778 -13.91000 -13.29990 -13.06913 -12.93071 -12.47472 -11.96520 -11.92217 -11.64789 -11.13590 -11.05416 -11.01580 -10.95371 -10.69280 -10.56621 -10.46356 -10.30318 -9.28868 -9.20741 -8.86392 -8.58874 -8.13155 -8.02312 -6.49608 -4.06405 1.31043 1.76543 1.83049 2.69165 2.81457 3.06616 3.11919 3.15583 3.58353 3.92836 4.15576 4.50976 4.65250 4.91516 5.16607 5.26522 5.37123 5.45026 5.49613 5.65609 5.75839 5.93546 6.05566 6.21612 6.33168 6.38184 6.77831 6.83687 6.85219 6.91138 7.05101 7.22647 7.28786 7.35071 7.76223 8.19729 8.68378 8.88852 9.11600 9.64327 10.42708 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.007789 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.391147 B = 3593.801203 C = 4583.144237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.403 5.403 3 C -0.305 4.305 4 H 0.110 0.890 5 C 0.034 3.966 6 N -0.869 5.869 7 Si 0.937 3.063 8 H -0.271 1.271 9 H -0.281 1.281 10 H -0.269 1.269 11 C 0.477 3.523 12 O -0.584 6.584 13 C 0.020 3.980 14 N -0.376 5.376 15 H 0.451 0.549 16 N -0.085 5.085 17 N -0.255 5.255 18 C 0.035 3.965 19 C -0.002 4.002 20 C -0.085 4.085 21 C -0.117 4.117 22 C -0.115 4.115 23 C -0.125 4.125 24 C -0.090 4.090 25 H 0.023 0.977 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.272 0.728 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 -4.471 3.278 6.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.118 5.118 3 C -0.433 4.433 4 H 0.128 0.872 5 C -0.171 4.171 6 N -0.507 5.507 7 Si 0.762 3.238 8 H -0.196 1.196 9 H -0.206 1.206 10 H -0.194 1.194 11 C 0.262 3.738 12 O -0.470 6.470 13 C -0.118 4.118 14 N -0.098 5.098 15 H 0.297 0.703 16 N -0.065 5.065 17 N -0.122 5.122 18 C -0.104 4.104 19 C -0.004 4.004 20 C -0.104 4.104 21 C -0.135 4.135 22 C -0.134 4.134 23 C -0.143 4.143 24 C -0.108 4.108 25 H 0.041 0.959 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.300 -5.651 2.905 7.160 hybrid contribution 0.890 1.886 -0.431 2.129 sum -2.410 -3.765 2.473 5.109 Atomic orbital electron populations 1.21916 0.79702 0.96847 1.05108 1.43560 1.06402 1.04225 1.57637 1.19828 0.94127 0.81441 1.47943 0.87226 1.25456 0.95885 1.00170 0.95565 1.70101 1.07893 1.28156 1.44581 0.85822 0.78913 0.79676 0.79345 1.19630 1.20618 1.19427 1.16255 0.86627 0.80992 0.89913 1.90703 1.12609 1.85610 1.58098 1.22956 1.03231 0.97740 0.87915 1.45321 1.35461 1.15726 1.13287 0.70290 1.77921 1.09241 1.08866 1.10498 1.74963 1.19966 1.17558 0.99708 1.20675 1.00980 0.93726 0.95011 1.17537 0.94211 0.99971 0.88702 1.21323 0.98817 0.96183 0.94114 1.21008 0.97445 0.99949 0.95069 1.21173 0.93156 0.99305 0.99752 1.20976 0.98886 1.00008 0.94457 1.21114 0.95965 0.98778 0.94990 0.95861 0.89188 0.91949 0.91682 0.85389 0.85901 0.86284 0.86031 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.42 8.77 59.85 0.52 2.95 16 2 N -0.40 -9.85 3.02 -123.67 -0.37 -10.22 16 3 C -0.31 -7.92 9.53 -15.03 -0.14 -8.07 16 4 H 0.11 2.95 7.21 -52.49 -0.38 2.57 16 5 C 0.03 0.84 5.40 -17.44 -0.09 0.74 16 6 N -0.87 -21.35 9.61 55.50 0.53 -20.81 16 7 Si 0.94 19.33 29.56 -169.99 -5.02 14.30 16 8 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 9 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 10 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 11 C 0.48 11.27 6.15 -12.81 -0.08 11.20 16 12 O -0.58 -15.49 16.71 5.18 0.09 -15.41 16 13 C 0.02 0.40 5.37 -81.63 -0.44 -0.04 16 14 N -0.38 -6.50 7.06 33.66 0.24 -6.26 16 15 H 0.45 6.16 8.96 -190.35 -1.71 4.45 16 16 N -0.09 -1.55 13.30 60.35 0.80 -0.74 16 17 N -0.25 -4.93 12.38 33.48 0.41 -4.52 16 18 C 0.03 0.68 5.95 -82.35 -0.49 0.19 16 19 C 0.00 -0.04 5.77 -104.91 -0.61 -0.64 16 20 C -0.09 -1.59 9.14 -39.22 -0.36 -1.94 16 21 C -0.12 -1.85 10.03 -39.63 -0.40 -2.25 16 22 C -0.12 -1.62 10.04 -39.50 -0.40 -2.01 16 23 C -0.13 -1.76 10.03 -39.63 -0.40 -2.16 16 24 C -0.09 -1.45 9.78 -39.22 -0.38 -1.83 16 25 H 0.02 0.48 5.60 -51.93 -0.29 0.19 16 26 H 0.09 2.16 6.72 -51.93 -0.35 1.81 16 27 H 0.06 1.44 7.42 -51.93 -0.39 1.05 16 28 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 29 H 0.13 2.61 7.37 -52.49 -0.39 2.22 16 30 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.12 1.32 8.06 -52.48 -0.42 0.89 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 LS Contribution 292.77 15.07 4.41 4.41 Total: -1.00 -29.40 292.77 -6.49 -35.90 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.32 Total: 7.22 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -3.26 Total: -3.87 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 1.61 Total: -42.56 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.09 Total: -15.41 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.40 -6.49 -35.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357600854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.447 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds