Wall clock time and date at job start Mon Mar 30 2020 01:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36783 * 120.00473 * 2 1 4 4 H 1.07996 * 120.00753 * 186.90763 * 3 2 1 5 5 C 1.39080 * 119.99571 * 6.90947 * 3 2 1 6 6 N 1.31351 * 120.00068 * 6.99076 * 5 3 2 7 7 Si 1.86801 * 119.99654 * 186.99015 * 5 3 2 8 8 H 1.48498 * 109.47374 * 60.00196 * 7 5 3 9 9 H 1.48503 * 109.46991 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47269 * 299.99677 * 7 5 3 11 11 C 1.34781 * 119.99797 * 179.97438 * 2 1 3 12 12 O 1.21714 * 120.00226 * 185.06215 * 11 2 1 13 13 C 1.46761 * 120.00193 * 5.06775 * 11 2 1 14 14 N 1.37152 * 127.36559 * 104.07063 * 13 11 2 15 15 H 0.97006 * 125.90644 * 359.96033 * 14 13 11 16 16 N 1.28615 * 108.19564 * 180.23169 * 14 13 11 17 17 N 1.28442 * 111.25478 * 359.60886 * 16 14 13 18 18 C 1.34177 * 109.41948 * 0.39747 * 17 16 14 19 19 C 1.48156 * 127.07194 * 179.74932 * 18 17 16 20 20 C 1.39464 * 120.13012 * 138.15866 * 19 18 17 21 21 C 1.37986 * 119.86434 * 179.69826 * 20 19 18 22 22 C 1.38345 * 120.12961 * 0.57538 * 21 20 19 23 23 C 1.38349 * 120.27149 * 359.72108 * 22 21 20 24 24 C 1.37980 * 120.13315 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.47417 * 175.33633 * 1 2 3 26 26 H 1.09003 * 109.46858 * 295.33747 * 1 2 3 27 27 H 1.08994 * 109.46931 * 55.33290 * 1 2 3 28 28 H 0.97000 * 119.99814 * 180.02562 * 6 5 3 29 29 H 1.07999 * 120.06679 * 359.97438 * 20 19 18 30 30 H 1.07993 * 119.93533 * 180.31786 * 21 20 19 31 31 H 1.08006 * 119.86774 * 179.74590 * 22 21 20 32 32 H 1.08002 * 119.93373 * 180.02562 * 23 22 21 33 33 H 1.08001 * 120.06886 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1845 0.0000 4 1 3.2231 1.1880 -0.1125 5 6 1.4612 2.3846 0.1449 6 7 0.1765 2.3764 0.4187 7 14 2.3644 4.0081 -0.0498 8 1 2.9462 4.0905 -1.4136 9 1 1.4133 5.1308 0.1507 10 1 3.4516 4.0938 0.9581 11 6 2.1388 -1.1673 0.0005 12 8 3.3524 -1.1694 0.0935 13 6 1.4093 -2.4358 -0.1112 14 7 1.3055 -3.2418 -1.2160 15 1 1.7080 -3.0740 -2.0825 16 7 0.5775 -4.2559 -0.9064 17 7 0.1933 -4.1968 0.3178 18 6 0.6740 -3.0787 0.8828 19 6 0.4655 -2.6216 2.2765 20 6 1.5254 -2.0762 3.0004 21 6 1.3236 -1.6464 4.2960 22 6 0.0757 -1.7667 4.8811 23 6 -0.9782 -2.3125 4.1701 24 6 -0.7902 -2.7401 2.8718 25 1 -0.3634 -1.0242 -0.0836 26 1 -0.3633 0.4398 0.9288 27 1 -0.3633 0.5845 -0.8452 28 1 -0.3032 3.2134 0.5194 29 1 2.5012 -1.9863 2.5463 30 1 2.1423 -1.2192 4.8558 31 1 -0.0766 -1.4327 5.8968 32 1 -1.9502 -2.4034 4.6321 33 1 -1.6138 -3.1657 2.3176 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357600854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:52 Heat of formation + Delta-G solvation = 79.692447 kcal Electronic energy + Delta-G solvation = -20747.035237 eV Core-core repulsion = 17581.673895 eV Total energy + Delta-G solvation = -3165.361342 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.27431 -40.36416 -39.79469 -36.89340 -34.86352 -34.00103 -33.13948 -31.81162 -30.59177 -28.48222 -26.92890 -25.02705 -24.58507 -23.20895 -22.70329 -21.40187 -19.48231 -19.01625 -18.20372 -17.60790 -17.14938 -16.78309 -16.50131 -15.92691 -15.70334 -15.57016 -14.75781 -14.58567 -14.30413 -13.82050 -13.75630 -13.65517 -13.27322 -12.92505 -12.76043 -12.49646 -12.43852 -12.19253 -12.14766 -12.03287 -11.73570 -11.15659 -10.90031 -10.57292 -10.05868 -9.82981 -9.39896 -8.37587 -6.04277 -0.10809 0.38456 0.52595 1.09135 1.33420 1.42316 1.46229 1.53986 1.86210 2.22244 2.83664 2.88991 3.02228 3.14629 3.65566 3.79424 4.03798 4.12471 4.16870 4.29176 4.41576 4.49574 4.66131 4.73249 4.98095 5.06079 5.15831 5.32727 5.39233 5.56770 5.60920 5.62101 5.67976 5.85230 6.08873 6.28318 6.96699 7.15989 7.21551 7.74798 8.53878 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.016057 B = 0.007789 C = 0.006108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.391147 B = 3593.801203 C = 4583.144237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.127 3.873 2 N -0.412 5.412 3 C -0.344 4.344 4 H 0.089 0.911 5 C 0.006 3.994 6 N -0.880 5.880 7 Si 0.998 3.002 8 H -0.268 1.268 9 H -0.267 1.267 10 H -0.271 1.271 11 C 0.484 3.516 12 O -0.622 6.622 13 C -0.008 4.008 14 N -0.356 5.356 15 H 0.465 0.535 16 N -0.070 5.070 17 N -0.266 5.266 18 C 0.045 3.955 19 C -0.031 4.031 20 C -0.111 4.111 21 C -0.125 4.125 22 C -0.106 4.106 23 C -0.117 4.117 24 C -0.095 4.095 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.279 0.721 29 H 0.096 0.904 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 -4.079 4.372 7.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.126 5.126 3 C -0.471 4.471 4 H 0.107 0.893 5 C -0.198 4.198 6 N -0.517 5.517 7 Si 0.820 3.180 8 H -0.193 1.193 9 H -0.191 1.191 10 H -0.196 1.196 11 C 0.271 3.729 12 O -0.510 6.510 13 C -0.146 4.146 14 N -0.081 5.081 15 H 0.315 0.685 16 N -0.050 5.050 17 N -0.133 5.133 18 C -0.094 4.094 19 C -0.033 4.033 20 C -0.130 4.130 21 C -0.143 4.143 22 C -0.124 4.124 23 C -0.134 4.134 24 C -0.114 4.114 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.156 0.844 31 H 0.176 0.824 32 H 0.178 0.822 33 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.920 -5.266 3.983 8.234 hybrid contribution 1.344 1.699 -0.710 2.280 sum -3.576 -3.567 3.273 6.018 Atomic orbital electron populations 1.21688 0.78679 0.97401 1.03815 1.43678 1.07023 1.04223 1.57665 1.19833 0.93720 0.82843 1.50718 0.89268 1.26188 0.96661 1.02516 0.94391 1.70167 1.08575 1.29273 1.43710 0.84928 0.77934 0.75972 0.79178 1.19298 1.19150 1.19608 1.16476 0.86208 0.81731 0.88509 1.90658 1.14444 1.86499 1.59412 1.22437 1.05183 0.97491 0.89446 1.45263 1.34752 1.14722 1.13378 0.68498 1.77864 1.08506 1.08375 1.10266 1.74978 1.20763 1.17523 1.00021 1.20954 0.99754 0.93224 0.95472 1.17708 0.95459 1.01678 0.88463 1.21217 0.97724 0.98384 0.95700 1.21283 0.99222 0.99690 0.94126 1.21627 0.91913 0.97589 1.01258 1.21449 1.00580 0.98014 0.93387 1.21341 0.95096 0.98837 0.96137 0.94370 0.90636 0.92742 0.91045 0.88614 0.84424 0.82441 0.82154 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.79 8.77 127.77 1.12 6.91 16 2 N -0.41 -20.68 3.02 -663.39 -2.00 -22.68 16 3 C -0.34 -18.34 9.53 84.12 0.80 -17.54 16 4 H 0.09 5.03 7.21 -2.91 -0.02 5.00 16 5 C 0.01 0.31 5.40 84.97 0.46 0.77 16 6 N -0.88 -42.89 9.61 21.69 0.21 -42.68 16 7 Si 1.00 39.25 29.56 68.60 2.03 41.28 16 8 H -0.27 -10.38 7.11 99.48 0.71 -9.68 16 9 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 10 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 11 C 0.48 23.74 6.15 86.47 0.53 24.28 16 12 O -0.62 -34.59 16.71 -4.39 -0.07 -34.67 16 13 C -0.01 -0.33 5.37 40.81 0.22 -0.11 16 14 N -0.36 -12.21 7.06 -47.40 -0.33 -12.54 16 15 H 0.47 12.53 8.96 -219.91 -1.97 10.56 16 16 N -0.07 -2.47 13.30 37.02 0.49 -1.98 16 17 N -0.27 -10.12 12.38 -47.99 -0.59 -10.72 16 18 C 0.04 1.77 5.95 41.69 0.25 2.02 16 19 C -0.03 -1.15 5.77 -20.05 -0.12 -1.27 16 20 C -0.11 -4.23 9.14 22.51 0.21 -4.02 16 21 C -0.13 -3.86 10.03 22.24 0.22 -3.63 16 22 C -0.11 -2.63 10.04 22.32 0.22 -2.40 16 23 C -0.12 -2.88 10.03 22.24 0.22 -2.65 16 24 C -0.10 -2.92 9.78 22.50 0.22 -2.70 16 25 H 0.04 1.59 5.60 -2.39 -0.01 1.58 16 26 H 0.08 3.65 6.72 -2.39 -0.02 3.63 16 27 H 0.05 2.52 7.42 -2.39 -0.02 2.50 16 28 H 0.28 12.68 8.31 -92.71 -0.77 11.91 16 29 H 0.10 4.19 7.37 -2.91 -0.02 4.17 16 30 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 31 H 0.16 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -64.33 292.77 3.28 -61.04 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.80 Total: 23.30 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 4.36 Total: -0.36 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -2.23 Total: -90.60 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.07 Total: -34.67 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Total: -64.33 3.28 -61.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357600854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.737 kcal (2) G-P(sol) polarization free energy of solvation -64.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds