Wall clock time and date at job start Mon Mar 30 2020 01:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38532 * 119.84490 * 2 1 4 4 C 1.38110 * 120.39314 * 179.74760 * 3 2 1 5 5 C 1.38699 * 120.08511 * 0.55933 * 4 3 2 6 6 N 1.39805 * 120.15333 * 179.72279 * 5 4 3 7 7 C 1.36365 * 127.11325 * 237.67178 * 6 5 4 8 8 N 1.30505 * 107.18943 * 179.97438 * 7 6 5 9 9 N 1.28535 * 109.92360 * 0.02562 * 8 7 6 10 10 C 1.30500 * 109.92500 * 359.97438 * 9 8 7 11 11 C 1.40235 * 119.69024 * 359.44480 * 5 4 3 12 12 C 1.47495 * 120.19593 * 180.29526 * 11 5 4 13 13 O 1.21620 * 119.99765 * 6.36680 * 12 11 5 14 14 N 1.34777 * 120.00250 * 186.36286 * 12 11 5 15 15 C 1.36883 * 120.00098 * 180.02562 * 14 12 11 16 16 H 1.08002 * 120.00214 * 0.02562 * 15 14 12 17 17 C 1.39032 * 120.00101 * 179.97438 * 15 14 12 18 18 N 1.31376 * 120.00125 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00233 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47094 * 60.00193 * 19 17 15 21 21 H 1.48506 * 109.47040 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47072 * 300.00226 * 19 17 15 23 23 C 1.37827 * 119.84508 * 180.02562 * 2 1 3 24 24 H 1.08996 * 109.46995 * 269.97278 * 1 2 3 25 25 H 1.09004 * 109.47174 * 29.97360 * 1 2 3 26 26 H 1.09002 * 109.47470 * 149.97096 * 1 2 3 27 27 H 1.08004 * 119.79967 * 0.05100 * 3 2 1 28 28 H 1.08003 * 119.95923 * 180.28509 * 4 3 2 29 29 H 1.08003 * 126.40582 * 0.24798 * 7 6 5 30 30 H 1.07997 * 126.40088 * 179.97438 * 10 9 8 31 31 H 0.97004 * 120.00205 * 0.02562 * 14 12 11 32 32 H 0.96996 * 120.00257 * 179.97438 * 18 17 15 33 33 H 1.08007 * 120.04687 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2016 0.0000 4 6 3.5774 1.2148 0.0052 5 6 4.2842 0.0214 -0.0012 6 7 5.6822 0.0332 -0.0017 7 6 6.5095 -0.5367 -0.9239 8 7 7.7345 -0.2900 -0.5476 9 7 7.7292 0.3916 0.5421 10 6 6.5006 0.6170 0.9196 11 6 3.5899 -1.1970 -0.0012 12 6 4.3303 -2.4727 -0.0014 13 8 5.5409 -2.4732 0.1153 14 7 3.6653 -3.6378 -0.1307 15 6 4.3524 -4.8217 -0.1304 16 1 5.4274 -4.8222 -0.0260 17 6 3.6664 -6.0237 -0.2633 18 7 2.3587 -6.0232 -0.3897 19 14 4.6039 -7.6394 -0.2621 20 1 5.3375 -7.7850 1.0208 21 1 3.6489 -8.7660 -0.4175 22 1 5.5707 -7.6515 -1.3893 23 6 2.1929 -1.1955 -0.0005 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3634 -0.8897 -0.5143 27 1 1.6506 2.1336 0.0008 28 1 4.1078 2.1556 0.0099 29 1 6.2073 -1.0854 -1.8037 30 1 6.1900 1.1633 1.7980 31 1 2.6998 -3.6375 -0.2241 32 1 1.8801 -6.8617 -0.4828 33 1 1.6511 -2.1298 -0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357601285.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:07 Heat of formation + Delta-G solvation = 77.281362 kcal Electronic energy + Delta-G solvation = -20306.956171 eV Core-core repulsion = 17141.490276 eV Total energy + Delta-G solvation = -3165.465895 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.52479 -39.68642 -37.76410 -35.06958 -34.08019 -31.95284 -31.34293 -30.79846 -29.92730 -26.64977 -25.56871 -23.52766 -22.88007 -21.51518 -21.05254 -19.51148 -18.60376 -17.76076 -16.56499 -15.78345 -15.16970 -15.05498 -14.64829 -14.38324 -14.13862 -14.02780 -13.89137 -13.88355 -13.41160 -12.89140 -12.35793 -11.96272 -11.86805 -11.81689 -11.44012 -11.25076 -10.94487 -10.63241 -10.48081 -10.20790 -9.93443 -9.80783 -9.02048 -8.89010 -8.51985 -8.34083 -8.24455 -6.78891 -4.08374 0.86986 1.18498 2.44042 3.00825 3.04852 3.10573 3.15198 3.33318 3.55926 3.91840 4.13680 4.51965 4.74607 4.79132 4.93603 5.06017 5.08315 5.18919 5.21662 5.48152 5.54011 5.62366 5.80564 5.86285 5.91840 5.98191 6.13455 6.19021 6.47443 6.53877 6.73058 6.77378 7.22344 7.56331 7.73041 8.25986 8.83803 9.15812 9.29029 9.73025 10.36669 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.007031 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.415873 B = 3981.128496 C = 5724.269712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.076 4.076 3 C -0.113 4.113 4 C -0.108 4.108 5 C 0.133 3.867 6 N -0.421 5.421 7 C 0.238 3.762 8 N -0.319 5.319 9 N -0.301 5.301 10 C 0.146 3.854 11 C -0.078 4.078 12 C 0.445 3.555 13 O -0.585 6.585 14 N -0.528 5.528 15 C -0.290 4.290 16 H 0.111 0.889 17 C 0.027 3.973 18 N -0.881 5.881 19 Si 0.938 3.062 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.096 4.096 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.130 0.870 28 H 0.130 0.870 29 H 0.205 0.795 30 H 0.209 0.791 31 H 0.394 0.606 32 H 0.280 0.720 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.690 11.444 -0.077 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.077 4.077 3 C -0.132 4.132 4 C -0.127 4.127 5 C 0.039 3.961 6 N -0.109 5.109 7 C -0.049 4.049 8 N -0.157 5.157 9 N -0.139 5.139 10 C -0.141 4.141 11 C -0.084 4.084 12 C 0.234 3.766 13 O -0.472 6.472 14 N -0.161 5.161 15 C -0.420 4.420 16 H 0.129 0.871 17 C -0.178 4.178 18 N -0.520 5.520 19 Si 0.763 3.237 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.193 1.193 23 C -0.116 4.116 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.148 0.852 28 H 0.148 0.852 29 H 0.222 0.778 30 H 0.225 0.775 31 H 0.229 0.771 32 H 0.090 0.910 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.459 11.198 -0.031 12.458 hybrid contribution -1.840 -1.050 0.093 2.121 sum -7.300 10.148 0.062 12.501 Atomic orbital electron populations 1.20828 0.90658 1.03114 1.02623 1.19934 0.96460 0.92731 0.98560 1.20882 0.92984 0.97778 1.01577 1.20957 0.94440 0.96206 1.01130 1.17402 0.80206 0.93148 1.05336 1.43650 1.05152 1.41694 1.20376 1.26227 0.85792 0.96749 0.96121 1.74077 1.17950 1.15360 1.08329 1.73992 1.17689 1.14435 1.07807 1.26393 0.86984 1.03142 0.97583 1.20379 0.93640 0.93937 1.00428 1.17534 0.87701 0.83026 0.88354 1.90671 1.12943 1.86123 1.57458 1.41954 1.10024 1.04991 1.59096 1.19891 0.94398 0.82120 1.45577 0.87106 1.25459 0.95772 1.00401 0.96205 1.69572 1.06795 1.29446 1.46145 0.85783 0.78906 0.79362 0.79603 1.19439 1.20562 1.19348 1.21252 0.92394 0.98522 0.99436 0.90871 0.91414 0.91002 0.85236 0.85179 0.77826 0.77490 0.77125 0.91005 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.00 36.01 0.36 -0.66 16 2 C -0.08 -0.91 5.87 -104.66 -0.61 -1.53 16 3 C -0.11 -1.22 9.68 -39.52 -0.38 -1.61 16 4 C -0.11 -1.35 9.82 -39.46 -0.39 -1.73 16 5 C 0.13 2.19 5.95 -83.30 -0.50 1.69 16 6 N -0.42 -7.68 2.10 -62.95 -0.13 -7.81 16 7 C 0.24 4.77 9.42 -89.15 -0.84 3.93 16 8 N -0.32 -6.97 12.19 29.86 0.36 -6.61 16 9 N -0.30 -6.24 12.19 29.85 0.36 -5.87 16 10 C 0.15 2.55 12.61 -89.16 -1.12 1.43 16 11 C -0.08 -1.43 5.88 -104.83 -0.62 -2.04 16 12 C 0.45 10.22 7.56 -12.49 -0.09 10.13 16 13 O -0.59 -15.26 12.23 5.26 0.06 -15.19 16 14 N -0.53 -12.63 5.23 -11.94 -0.06 -12.70 16 15 C -0.29 -7.62 9.68 -15.00 -0.15 -7.76 16 16 H 0.11 3.09 7.15 -52.49 -0.38 2.71 16 17 C 0.03 0.66 5.50 -17.45 -0.10 0.57 16 18 N -0.88 -22.03 13.05 55.50 0.72 -21.31 16 19 Si 0.94 19.83 29.55 -169.99 -5.02 14.80 16 20 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 C -0.10 -1.45 9.16 -39.18 -0.36 -1.81 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 26 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 28 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 29 H 0.21 3.83 7.99 -52.48 -0.42 3.41 16 30 H 0.21 2.67 8.06 -52.49 -0.42 2.25 16 31 H 0.39 8.84 5.97 -40.82 -0.24 8.60 16 32 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.14 2.03 6.46 -52.48 -0.34 1.69 16 LS Contribution 293.36 15.07 4.42 4.42 Total: -1.00 -31.63 293.36 -7.12 -38.75 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -3.04 Total: 10.90 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -4.80 Total: 0.61 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 1.26 Total: -54.29 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.06 Total: -15.19 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.63 -7.12 -38.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357601285.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.031 kcal (2) G-P(sol) polarization free energy of solvation -31.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds