Wall clock time and date at job start Mon Mar 30 2020 01:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30531 * 126.39566 * 2 1 4 4 N 1.28531 * 109.89938 * 179.97438 * 3 2 1 5 5 C 1.30533 * 109.89990 * 359.71989 * 4 3 2 6 6 N 1.36285 * 126.40148 * 179.97438 * 2 1 3 7 7 C 1.40265 * 127.10241 * 0.02562 * 6 2 1 8 8 C 1.38949 * 120.02027 * 310.02701 * 7 6 2 9 9 C 1.38205 * 120.09779 * 180.02562 * 8 7 6 10 10 C 1.38120 * 120.14571 * 359.95035 * 9 8 7 11 11 C 1.39053 * 120.04465 * 0.04872 * 10 9 8 12 12 N 1.39530 * 120.04819 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99854 * 213.35783 * 12 11 10 14 14 O 1.21743 * 119.99800 * 5.28063 * 13 12 11 15 15 C 1.46166 * 120.00104 * 185.27486 * 13 12 11 16 16 H 1.08007 * 119.99668 * 0.02562 * 15 13 12 17 17 C 1.40125 * 120.00039 * 180.02562 * 15 13 12 18 18 N 1.30633 * 119.99731 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 119.99810 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47411 * 89.99589 * 19 17 15 21 21 H 1.48501 * 109.46942 * 209.99960 * 19 17 15 22 22 H 1.48503 * 109.47024 * 329.99390 * 19 17 15 23 23 C 1.38605 * 120.02345 * 130.00569 * 7 6 2 24 24 H 1.09001 * 109.47237 * 270.02217 * 1 2 3 25 25 H 1.08996 * 109.47433 * 30.02787 * 1 2 3 26 26 H 1.09000 * 109.46541 * 150.02998 * 1 2 3 27 27 H 1.07997 * 126.40477 * 180.31004 * 5 4 3 28 28 H 1.07991 * 119.95180 * 359.97146 * 8 7 6 29 29 H 1.08002 * 119.92028 * 179.97438 * 9 8 7 30 30 H 1.07999 * 119.97286 * 180.02562 * 10 9 8 31 31 H 0.97001 * 120.00141 * 33.35788 * 12 11 10 32 32 H 0.97003 * 120.00005 * 180.02562 * 18 17 15 33 33 H 1.08004 * 120.06970 * 359.74135 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2815 1.0507 0.0000 4 7 3.5139 0.6857 0.0005 5 6 3.5914 -0.6173 0.0069 6 7 2.3158 -1.0969 0.0005 7 6 1.9175 -2.4418 0.0006 8 6 0.9779 -2.8885 0.9216 9 6 0.5847 -4.2135 0.9235 10 6 1.1232 -5.0981 0.0096 11 6 2.0640 -4.6575 -0.9148 12 7 2.6076 -5.5510 -1.8383 13 6 3.8836 -5.4045 -2.2470 14 8 4.5911 -4.5532 -1.7403 15 6 4.4179 -6.2679 -3.2985 16 1 3.7901 -7.0229 -3.7482 17 6 5.7446 -6.1159 -3.7230 18 7 6.5037 -5.2023 -3.1793 19 14 6.4272 -7.2188 -5.0672 20 1 6.1927 -6.5886 -6.3913 21 1 7.8856 -7.4072 -4.8599 22 1 5.7461 -8.5375 -5.0190 23 6 2.4606 -3.3260 -0.9183 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3632 -0.8903 -0.5134 27 1 4.4972 -1.2055 0.0136 28 1 0.5548 -2.1996 1.6376 29 1 -0.1456 -4.5576 1.6409 30 1 0.8136 -6.1328 0.0133 31 1 2.0673 -6.2776 -2.1862 32 1 7.4221 -5.0968 -3.4734 33 1 3.1878 -2.9798 -1.6379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357643226.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:41 Heat of formation + Delta-G solvation = 68.348477 kcal Electronic energy + Delta-G solvation = -19955.481741 eV Core-core repulsion = 16789.628487 eV Total energy + Delta-G solvation = -3165.853254 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.95277 -39.56450 -37.39607 -34.87524 -33.35407 -32.56735 -32.31205 -29.87242 -29.08417 -27.59573 -26.43233 -23.68899 -22.78775 -21.60071 -20.79760 -19.79585 -18.15793 -17.39406 -16.18786 -16.03485 -15.64016 -15.44666 -14.90747 -14.56624 -14.22285 -13.82214 -13.60866 -13.07899 -12.93389 -12.74200 -12.67376 -12.27667 -11.82461 -11.64238 -11.37675 -11.22024 -11.15415 -10.79134 -10.65562 -10.45954 -10.21975 -9.59732 -9.06165 -8.99617 -8.62735 -7.96744 -7.44616 -6.50343 -4.98824 1.14088 1.60608 2.11607 2.62610 2.98519 3.04567 3.06136 3.09330 3.79368 3.86762 4.30843 4.31616 4.45879 4.80210 5.01350 5.10782 5.20693 5.36471 5.37954 5.42882 5.56195 5.61305 5.71414 5.77578 5.92093 6.12595 6.30926 6.46068 6.57396 6.64823 6.78148 7.14243 7.28854 7.50039 7.76328 7.95785 8.69571 8.88566 8.97616 10.17521 10.39484 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.005006 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.908255 B = 5592.042511 C = 6530.524976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.175 3.825 3 N -0.300 5.300 4 N -0.302 5.302 5 C 0.173 3.827 6 N -0.423 5.423 7 C 0.125 3.875 8 C -0.159 4.159 9 C -0.081 4.081 10 C -0.166 4.166 11 C 0.212 3.788 12 N -0.697 5.697 13 C 0.539 3.461 14 O -0.560 6.560 15 C -0.536 4.536 16 H 0.074 0.926 17 C 0.086 3.914 18 N -0.755 5.755 19 Si 0.914 3.086 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.120 4.120 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.223 0.777 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.397 0.603 32 H 0.274 0.726 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.133 0.154 4.966 13.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.091 4.091 3 N -0.140 5.140 4 N -0.140 5.140 5 C -0.114 4.114 6 N -0.110 5.110 7 C 0.034 3.966 8 C -0.180 4.180 9 C -0.100 4.100 10 C -0.188 4.188 11 C 0.111 3.889 12 N -0.339 5.339 13 C 0.346 3.654 14 O -0.442 6.442 15 C -0.571 4.571 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.383 5.383 19 Si 0.738 3.262 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.143 4.143 24 H 0.102 0.898 25 H 0.111 0.889 26 H 0.099 0.901 27 H 0.239 0.761 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.231 0.769 32 H 0.085 0.915 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.878 2.304 5.226 12.286 hybrid contribution -0.067 -2.400 -0.809 2.534 sum -10.945 -0.097 4.417 11.803 Atomic orbital electron populations 1.20222 0.83888 1.04514 1.03757 1.25104 0.97092 0.82394 1.04514 1.74139 0.96679 1.23782 1.19398 1.74175 1.11899 1.09033 1.18860 1.26888 0.88726 0.92764 1.02976 1.44022 1.07307 1.06036 1.53657 1.17450 0.99891 0.80614 0.98676 1.20735 1.00722 0.96804 0.99729 1.20654 0.99243 0.92072 0.98075 1.21080 1.01533 1.00077 0.96152 1.17712 0.92166 0.88991 0.89985 1.44287 1.15346 1.30434 1.43880 1.18452 0.78039 0.85397 0.83469 1.90637 1.56981 1.37941 1.58600 1.20854 0.97515 1.19291 1.19480 0.90823 1.25753 0.96509 0.94826 0.96492 1.69958 1.07039 1.26424 1.34875 0.86250 0.78478 0.80645 0.80811 1.19469 1.20163 1.18694 1.21200 1.01992 0.91645 0.99468 0.89791 0.88925 0.90119 0.76092 0.86064 0.85372 0.85545 0.76851 0.91483 0.83456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 9.40 36.01 0.34 -0.35 16 2 C 0.18 2.76 7.91 -154.24 -1.22 1.54 16 3 N -0.30 -5.54 12.20 32.94 0.40 -5.14 16 4 N -0.30 -5.85 12.20 29.84 0.36 -5.49 16 5 C 0.17 3.10 12.51 -89.20 -1.12 1.98 16 6 N -0.42 -7.11 2.89 -58.97 -0.17 -7.28 16 7 C 0.13 2.05 5.77 -83.60 -0.48 1.57 16 8 C -0.16 -2.11 8.89 -39.33 -0.35 -2.46 16 9 C -0.08 -0.98 10.03 -39.64 -0.40 -1.38 16 10 C -0.17 -2.35 9.96 -39.32 -0.39 -2.74 16 11 C 0.21 3.87 6.27 -83.79 -0.53 3.34 16 12 N -0.70 -13.96 5.32 -11.21 -0.06 -14.02 16 13 C 0.54 13.81 7.47 -13.08 -0.10 13.71 16 14 O -0.56 -16.18 12.70 5.15 0.07 -16.11 16 15 C -0.54 -13.72 9.54 -35.69 -0.34 -14.06 16 16 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 17 C 0.09 2.21 5.50 -17.35 -0.10 2.12 16 18 N -0.76 -20.95 11.82 55.55 0.66 -20.29 16 19 Si 0.91 18.63 29.56 -169.99 -5.02 13.61 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.12 -2.32 8.31 -39.19 -0.33 -2.64 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 0.80 7.68 -51.93 -0.40 0.40 16 27 H 0.22 3.65 8.06 -52.49 -0.42 3.23 16 28 H 0.12 1.36 7.76 -52.49 -0.41 0.96 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.40 6.64 8.79 -40.82 -0.36 6.28 16 32 H 0.27 6.92 8.29 -40.82 -0.34 6.58 16 33 H 0.15 3.37 6.43 -52.48 -0.34 3.03 16 LS Contribution 296.83 15.07 4.47 4.47 Total: -1.00 -32.86 296.83 -7.46 -40.32 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.16 Total: 9.32 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -5.00 Total: 0.62 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 1.19 Total: -52.22 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.07 Total: -16.11 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.86 -7.46 -40.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357643226.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.665 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds