Wall clock time and date at job start Mon Mar 30 2020 01:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30531 * 126.39566 * 2 1 4 4 N 1.28531 * 109.89938 * 179.97438 * 3 2 1 5 5 C 1.30533 * 109.89990 * 359.71989 * 4 3 2 6 6 N 1.36285 * 126.40148 * 179.97438 * 2 1 3 7 7 C 1.40265 * 127.10241 * 0.02562 * 6 2 1 8 8 C 1.38949 * 120.02027 * 310.02701 * 7 6 2 9 9 C 1.38205 * 120.09779 * 180.02562 * 8 7 6 10 10 C 1.38120 * 120.14571 * 359.95035 * 9 8 7 11 11 C 1.39053 * 120.04465 * 0.04872 * 10 9 8 12 12 N 1.39530 * 120.04819 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99854 * 213.35783 * 12 11 10 14 14 O 1.21743 * 119.99800 * 5.28063 * 13 12 11 15 15 C 1.46166 * 120.00104 * 185.27486 * 13 12 11 16 16 H 1.08007 * 119.99668 * 0.02562 * 15 13 12 17 17 C 1.40125 * 120.00039 * 180.02562 * 15 13 12 18 18 N 1.30633 * 119.99731 * 359.97438 * 17 15 13 19 19 Si 1.86795 * 119.99810 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47411 * 89.99589 * 19 17 15 21 21 H 1.48501 * 109.46942 * 209.99960 * 19 17 15 22 22 H 1.48503 * 109.47024 * 329.99390 * 19 17 15 23 23 C 1.38605 * 120.02345 * 130.00569 * 7 6 2 24 24 H 1.09001 * 109.47237 * 270.02217 * 1 2 3 25 25 H 1.08996 * 109.47433 * 30.02787 * 1 2 3 26 26 H 1.09000 * 109.46541 * 150.02998 * 1 2 3 27 27 H 1.07997 * 126.40477 * 180.31004 * 5 4 3 28 28 H 1.07991 * 119.95180 * 359.97146 * 8 7 6 29 29 H 1.08002 * 119.92028 * 179.97438 * 9 8 7 30 30 H 1.07999 * 119.97286 * 180.02562 * 10 9 8 31 31 H 0.97001 * 120.00141 * 33.35788 * 12 11 10 32 32 H 0.97003 * 120.00005 * 180.02562 * 18 17 15 33 33 H 1.08004 * 120.06970 * 359.74135 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2815 1.0507 0.0000 4 7 3.5139 0.6857 0.0005 5 6 3.5914 -0.6173 0.0069 6 7 2.3158 -1.0969 0.0005 7 6 1.9175 -2.4418 0.0006 8 6 0.9779 -2.8885 0.9216 9 6 0.5847 -4.2135 0.9235 10 6 1.1232 -5.0981 0.0096 11 6 2.0640 -4.6575 -0.9148 12 7 2.6076 -5.5510 -1.8383 13 6 3.8836 -5.4045 -2.2470 14 8 4.5911 -4.5532 -1.7403 15 6 4.4179 -6.2679 -3.2985 16 1 3.7901 -7.0229 -3.7482 17 6 5.7446 -6.1159 -3.7230 18 7 6.5037 -5.2023 -3.1793 19 14 6.4272 -7.2188 -5.0672 20 1 6.1927 -6.5886 -6.3913 21 1 7.8856 -7.4072 -4.8599 22 1 5.7461 -8.5375 -5.0190 23 6 2.4606 -3.3260 -0.9183 24 1 -0.3634 0.0004 1.0277 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3632 -0.8903 -0.5134 27 1 4.4972 -1.2055 0.0136 28 1 0.5548 -2.1996 1.6376 29 1 -0.1456 -4.5576 1.6409 30 1 0.8136 -6.1328 0.0133 31 1 2.0673 -6.2776 -2.1862 32 1 7.4221 -5.0968 -3.4734 33 1 3.1878 -2.9798 -1.6379 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357643226.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:40 Heat of formation + Delta-G solvation = 47.673568 kcal Electronic energy + Delta-G solvation = -19956.378272 eV Core-core repulsion = 16789.628487 eV Total energy + Delta-G solvation = -3166.749785 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.28933 -40.97461 -39.03709 -36.33018 -34.97991 -34.41710 -33.46521 -31.19451 -30.47211 -28.72848 -28.26942 -24.99753 -24.16502 -22.98996 -22.20645 -21.28856 -19.71129 -18.97106 -17.71343 -17.29402 -17.23383 -16.88129 -16.26669 -16.04943 -15.75999 -15.05562 -14.89934 -14.55316 -14.40515 -13.88959 -13.77850 -13.55241 -13.27563 -13.00303 -12.86603 -12.82284 -12.66292 -12.43227 -12.07413 -11.99897 -11.56974 -11.12434 -10.89044 -10.32714 -10.07431 -9.71823 -8.91941 -8.41302 -6.98855 -0.09828 0.37426 0.83316 1.36060 1.38463 1.38711 1.54688 1.66276 2.17589 2.30387 2.69790 2.84467 3.33962 3.51867 3.57232 3.89582 3.94828 4.05682 4.21998 4.28191 4.53026 4.55020 4.64546 4.78630 4.81166 4.88765 5.11318 5.21900 5.28739 5.37364 5.38005 5.60580 5.73786 6.01089 6.11302 6.26824 6.74503 7.26867 7.51742 8.29238 8.51764 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.005006 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.908255 B = 5592.042511 C = 6530.524976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.189 3.811 3 N -0.334 5.334 4 N -0.327 5.327 5 C 0.157 3.843 6 N -0.426 5.426 7 C 0.115 3.885 8 C -0.137 4.137 9 C -0.062 4.062 10 C -0.148 4.148 11 C 0.176 3.824 12 N -0.691 5.691 13 C 0.527 3.473 14 O -0.605 6.605 15 C -0.564 4.564 16 H 0.095 0.905 17 C 0.031 3.969 18 N -0.812 5.812 19 Si 0.998 3.002 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.244 1.244 23 C -0.148 4.148 24 H 0.117 0.883 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.220 0.780 28 H 0.155 0.845 29 H 0.183 0.817 30 H 0.158 0.842 31 H 0.412 0.588 32 H 0.277 0.723 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.539 -1.636 6.101 16.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.078 4.078 3 N -0.174 5.174 4 N -0.164 5.164 5 C -0.130 4.130 6 N -0.113 5.113 7 C 0.024 3.976 8 C -0.158 4.158 9 C -0.080 4.080 10 C -0.169 4.169 11 C 0.078 3.922 12 N -0.335 5.335 13 C 0.334 3.666 14 O -0.491 6.491 15 C -0.599 4.599 16 H 0.113 0.887 17 C -0.186 4.186 18 N -0.441 5.441 19 Si 0.817 3.183 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.167 1.167 23 C -0.171 4.171 24 H 0.135 0.865 25 H 0.124 0.876 26 H 0.111 0.889 27 H 0.236 0.764 28 H 0.173 0.827 29 H 0.200 0.800 30 H 0.176 0.824 31 H 0.249 0.751 32 H 0.087 0.913 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.359 0.511 6.381 15.721 hybrid contribution 0.813 -1.787 -1.048 2.225 sum -13.546 -1.275 5.333 14.613 Atomic orbital electron populations 1.20554 0.79837 1.05778 1.06197 1.26104 0.98964 0.81201 1.01494 1.74066 0.96622 1.25176 1.21505 1.74092 1.13003 1.09668 1.19683 1.26903 0.89722 0.92654 1.03761 1.44131 1.06939 1.06694 1.53570 1.17577 1.00907 0.79907 0.99210 1.21185 0.98363 0.98077 0.98161 1.21254 0.98602 0.90747 0.97422 1.21454 0.98986 1.02054 0.94403 1.18002 0.94415 0.88270 0.91536 1.43727 1.13951 1.31301 1.44558 1.18729 0.79612 0.84768 0.83446 1.90606 1.58953 1.39494 1.60017 1.21423 0.98475 1.20000 1.20034 0.88678 1.26970 0.96693 0.96031 0.98869 1.70130 1.07633 1.28998 1.37347 0.85003 0.77566 0.78832 0.76905 1.18865 1.19925 1.16742 1.20879 1.02598 0.93307 1.00353 0.86513 0.87564 0.88926 0.76402 0.82745 0.80011 0.82408 0.75110 0.91282 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 9.40 71.24 0.67 -0.48 16 2 C 0.19 5.76 7.91 137.72 1.09 6.85 16 3 N -0.33 -12.48 12.20 -49.69 -0.61 -13.09 16 4 N -0.33 -13.29 12.20 -59.49 -0.73 -14.01 16 5 C 0.16 6.02 12.51 179.85 2.25 8.27 16 6 N -0.43 -14.47 2.89 -340.49 -0.98 -15.46 16 7 C 0.12 3.69 5.77 38.05 0.22 3.91 16 8 C -0.14 -3.06 8.89 22.43 0.20 -2.86 16 9 C -0.06 -1.14 10.03 22.23 0.22 -0.92 16 10 C -0.15 -3.62 9.96 22.44 0.22 -3.39 16 11 C 0.18 6.39 6.27 38.28 0.24 6.64 16 12 N -0.69 -28.24 5.32 -307.59 -1.64 -29.88 16 13 C 0.53 28.36 7.47 86.30 0.64 29.00 16 14 O -0.61 -37.57 12.70 -4.48 -0.06 -37.63 16 15 C -0.56 -29.66 9.54 24.79 0.24 -29.43 16 16 H 0.10 4.39 7.85 -2.91 -0.02 4.36 16 17 C 0.03 1.63 5.50 85.33 0.47 2.10 16 18 N -0.81 -47.50 11.82 21.85 0.26 -47.24 16 19 Si 1.00 38.65 29.56 68.60 2.03 40.68 16 20 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 22 H -0.24 -8.64 7.11 99.48 0.71 -7.94 16 23 C -0.15 -5.96 8.31 22.52 0.19 -5.78 16 24 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.09 1.47 7.68 -2.39 -0.02 1.45 16 27 H 0.22 8.14 8.06 -2.91 -0.02 8.11 16 28 H 0.15 2.51 7.76 -2.92 -0.02 2.49 16 29 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 30 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 31 H 0.41 13.64 8.79 -92.71 -0.82 12.83 16 32 H 0.28 14.78 8.29 -92.71 -0.77 14.01 16 33 H 0.09 4.78 6.43 -2.91 -0.02 4.76 16 Total: -1.00 -79.35 296.83 5.28 -74.07 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.35 Total: 28.64 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 6.65 Total: 13.91 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -3.69 Total: -119.67 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -0.06 Total: -37.63 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -79.35 5.28 -74.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357643226.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.743 kcal (2) G-P(sol) polarization free energy of solvation -79.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds