Wall clock time and date at job start Mon Mar 30 2020 01:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36868 * 120.00297 * 2 1 4 4 H 1.08001 * 120.00336 * 154.04793 * 3 2 1 5 5 C 1.39046 * 120.00067 * 334.04704 * 3 2 1 6 6 N 1.31364 * 119.99780 * 349.62940 * 5 3 2 7 7 Si 1.86800 * 120.00178 * 169.63025 * 5 3 2 8 8 H 1.48494 * 109.47303 * 89.99982 * 7 5 3 9 9 H 1.48506 * 109.46902 * 210.00301 * 7 5 3 10 10 H 1.48495 * 109.47039 * 329.99625 * 7 5 3 11 11 C 1.34783 * 119.99842 * 180.02562 * 2 1 3 12 12 O 1.21592 * 119.99949 * 186.00190 * 11 2 1 13 13 C 1.47735 * 119.99673 * 5.99838 * 11 2 1 14 14 C 1.39693 * 120.11401 * 214.97514 * 13 11 2 15 15 C 1.37959 * 119.97618 * 180.02562 * 14 13 11 16 16 C 1.38280 * 120.22375 * 0.02562 * 15 14 13 17 17 C 1.38934 * 120.24206 * 359.97438 * 16 15 14 18 18 N 1.40228 * 119.99057 * 179.97438 * 17 16 15 19 19 C 1.34713 * 126.84175 * 5.00032 * 18 17 16 20 20 N 1.30849 * 108.03162 * 180.02562 * 19 18 17 21 21 C 1.33261 * 109.84279 * 0.02562 * 20 19 18 22 22 N 1.30749 * 108.99819 * 0.22387 * 21 20 19 23 23 C 1.38569 * 120.01396 * 0.27519 * 17 16 15 24 24 H 1.08998 * 109.47115 * 204.95741 * 1 2 3 25 25 H 1.09008 * 109.46601 * 324.95175 * 1 2 3 26 26 H 1.08999 * 109.47673 * 84.95017 * 1 2 3 27 27 H 0.96997 * 119.99825 * 180.02562 * 6 5 3 28 28 H 1.07991 * 120.01464 * 0.02562 * 14 13 11 29 29 H 1.08004 * 119.88910 * 179.97438 * 15 14 13 30 30 H 1.08002 * 119.87921 * 180.02562 * 16 15 14 31 31 H 1.07999 * 125.98743 * 0.03931 * 19 18 17 32 32 H 1.08003 * 125.49860 * 179.97438 * 21 20 19 33 33 H 1.07995 * 120.11102 * 179.71695 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1477 1.2324 0.4093 5 6 1.5594 2.3288 -0.5270 6 7 0.4380 2.2364 -1.2049 7 14 2.3614 3.9963 -0.2710 8 1 3.3030 4.2692 -1.3862 9 1 1.3145 5.0492 -0.2380 10 1 3.1038 3.9963 1.0151 11 6 2.1389 -1.1673 -0.0005 12 8 3.3498 -1.1702 0.1096 13 6 1.4061 -2.4431 -0.1348 14 6 1.8510 -3.5814 0.5419 15 6 1.1649 -4.7714 0.4140 16 6 0.0370 -4.8425 -0.3829 17 6 -0.4135 -3.7161 -1.0600 18 7 -1.5575 -3.7943 -1.8672 19 6 -2.3736 -4.8564 -2.0109 20 7 -3.3223 -4.5276 -2.8500 21 6 -3.1471 -3.2723 -3.2616 22 7 -2.0769 -2.7829 -2.6917 23 6 0.2710 -2.5169 -0.9428 24 1 -0.3633 -0.9317 0.4336 25 1 -0.3633 0.8414 0.5902 26 1 -0.3634 0.0905 -1.0236 27 1 0.0266 3.0340 -1.5729 28 1 2.7316 -3.5298 1.1648 29 1 1.5102 -5.6507 0.9375 30 1 -0.4961 -5.7769 -0.4787 31 1 -2.2643 -5.8118 -1.5194 32 1 -3.7839 -2.7457 -3.9570 33 1 -0.0751 -1.6415 -1.4721 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359930086.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:03 Heat of formation + Delta-G solvation = 108.728507 kcal Electronic energy + Delta-G solvation = -20153.432459 eV Core-core repulsion = 16989.330215 eV Total energy + Delta-G solvation = -3164.102244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.29524 -39.63391 -37.75373 -34.87292 -33.95538 -32.14583 -31.43941 -30.58669 -29.31020 -26.43033 -25.16910 -23.94455 -23.28299 -21.66557 -21.13122 -19.71075 -17.77326 -16.97847 -16.18237 -16.00088 -15.81792 -15.57758 -14.93736 -14.51354 -14.23128 -14.12007 -13.78898 -13.37845 -12.93764 -12.63623 -12.27350 -11.95539 -11.68352 -11.52376 -11.32531 -11.03585 -10.83390 -10.73476 -10.44304 -10.38426 -10.12209 -9.90260 -9.13337 -8.83129 -8.53468 -8.29297 -7.76067 -6.42276 -3.99234 0.75679 1.24471 2.03942 2.19629 2.86657 3.12014 3.20333 3.25619 3.53419 4.04309 4.15821 4.20332 4.42298 4.68910 4.77438 4.91733 5.06010 5.07013 5.37103 5.54262 5.55272 5.64831 5.94950 6.09874 6.24836 6.32474 6.39450 6.42586 6.65105 6.71319 6.76478 7.06735 7.15682 7.45920 7.96392 8.02846 8.36569 9.05764 9.26931 9.84293 10.60028 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.005672 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.487487 B = 4934.935582 C = 6158.395894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.426 5.426 3 C -0.308 4.308 4 H 0.102 0.898 5 C 0.033 3.967 6 N -0.872 5.872 7 Si 0.931 3.069 8 H -0.275 1.275 9 H -0.282 1.282 10 H -0.268 1.268 11 C 0.473 3.527 12 O -0.585 6.585 13 C -0.072 4.072 14 C -0.080 4.080 15 C -0.105 4.105 16 C -0.132 4.132 17 C 0.130 3.870 18 N -0.320 5.320 19 C 0.253 3.747 20 N -0.543 5.543 21 C 0.197 3.803 22 N -0.301 5.301 23 C -0.088 4.088 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.271 0.729 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.220 0.780 32 H 0.221 0.779 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.608 -12.427 0.871 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.142 5.142 3 C -0.436 4.436 4 H 0.120 0.880 5 C -0.171 4.171 6 N -0.510 5.510 7 Si 0.757 3.243 8 H -0.201 1.201 9 H -0.207 1.207 10 H -0.192 1.192 11 C 0.261 3.739 12 O -0.471 6.471 13 C -0.076 4.076 14 C -0.099 4.099 15 C -0.123 4.123 16 C -0.153 4.153 17 C 0.038 3.962 18 N -0.104 5.104 19 C -0.042 4.042 20 N -0.270 5.270 21 C -0.105 4.105 22 N -0.127 5.127 23 C -0.108 4.108 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.236 0.764 32 H 0.238 0.762 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.192 -11.689 0.591 13.241 hybrid contribution 0.113 0.691 0.042 0.702 sum -6.080 -10.997 0.633 12.582 Atomic orbital electron populations 1.21838 0.81048 0.98601 1.02438 1.43485 1.05632 1.04746 1.60334 1.19682 1.01453 0.84432 1.38023 0.88036 1.25464 0.96423 1.00410 0.94834 1.69948 1.18544 1.30279 1.32212 0.85857 0.78683 0.80557 0.79207 1.20099 1.20704 1.19245 1.17867 0.87132 0.83010 0.85844 1.90619 1.13435 1.86615 1.56387 1.20338 0.94253 0.96245 0.96778 1.21390 0.99325 0.91329 0.97903 1.20852 0.94676 0.98086 0.98721 1.20769 0.98728 0.96255 0.99558 1.17453 0.87256 0.95911 0.95595 1.47753 1.20258 1.10293 1.32131 1.26094 0.87275 0.94681 0.96194 1.70592 1.25636 1.14964 1.15761 1.26159 0.94506 0.90404 0.99418 1.78316 1.13689 1.11514 1.09173 1.21591 0.93931 0.97059 0.98244 0.94909 0.91841 0.91089 0.91868 0.84610 0.84707 0.85377 0.76366 0.76246 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.38 7.10 59.85 0.42 2.81 16 2 N -0.43 -11.02 3.00 -123.31 -0.37 -11.39 16 3 C -0.31 -8.53 9.24 -15.00 -0.14 -8.67 16 4 H 0.10 2.92 7.42 -52.49 -0.39 2.53 16 5 C 0.03 0.88 5.15 -17.45 -0.09 0.79 16 6 N -0.87 -23.02 10.74 55.50 0.60 -22.42 16 7 Si 0.93 20.45 29.57 -169.99 -5.03 15.42 16 8 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 C 0.47 11.80 7.31 -12.38 -0.09 11.71 16 12 O -0.58 -16.35 16.53 5.29 0.09 -16.26 16 13 C -0.07 -1.42 5.15 -104.99 -0.54 -1.96 16 14 C -0.08 -1.28 9.61 -39.14 -0.38 -1.65 16 15 C -0.10 -1.26 10.02 -39.67 -0.40 -1.65 16 16 C -0.13 -1.54 9.47 -39.31 -0.37 -1.92 16 17 C 0.13 1.97 6.68 -83.64 -0.56 1.41 16 18 N -0.32 -4.72 3.82 -11.84 -0.05 -4.77 16 19 C 0.25 2.97 11.97 -90.38 -1.08 1.89 16 20 N -0.54 -7.19 11.19 -15.75 -0.18 -7.37 16 21 C 0.20 2.65 13.03 -91.76 -1.20 1.45 16 22 N -0.30 -4.92 12.06 29.30 0.35 -4.57 16 23 C -0.09 -1.62 7.24 -38.98 -0.28 -1.90 16 24 H 0.03 0.66 5.76 -51.93 -0.30 0.36 16 25 H 0.06 1.50 7.47 -51.92 -0.39 1.11 16 26 H 0.07 1.71 6.20 -51.93 -0.32 1.38 16 27 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 28 H 0.14 2.13 8.00 -52.49 -0.42 1.71 16 29 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 30 H 0.13 0.98 6.82 -52.49 -0.36 0.63 16 31 H 0.22 1.48 7.12 -52.49 -0.37 1.10 16 32 H 0.22 2.08 8.06 -52.48 -0.42 1.66 16 33 H 0.15 3.19 5.23 -52.49 -0.27 2.91 16 LS Contribution 288.64 15.07 4.35 4.35 Total: -1.00 -33.18 288.64 -7.73 -40.91 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -2.80 Total: 3.80 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -4.70 Total: 2.30 kcal Atomic # 7 Polarization: -50.88 SS G_CDS: 0.36 Total: -50.52 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.09 Total: -16.26 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.18 -7.73 -40.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359930086.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.639 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds