Wall clock time and date at job start Mon Mar 30 2020 01:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36868 * 120.00297 * 2 1 4 4 H 1.08001 * 120.00336 * 154.04793 * 3 2 1 5 5 C 1.39046 * 120.00067 * 334.04704 * 3 2 1 6 6 N 1.31364 * 119.99780 * 349.62940 * 5 3 2 7 7 Si 1.86800 * 120.00178 * 169.63025 * 5 3 2 8 8 H 1.48494 * 109.47303 * 89.99982 * 7 5 3 9 9 H 1.48506 * 109.46902 * 210.00301 * 7 5 3 10 10 H 1.48495 * 109.47039 * 329.99625 * 7 5 3 11 11 C 1.34783 * 119.99842 * 180.02562 * 2 1 3 12 12 O 1.21592 * 119.99949 * 186.00190 * 11 2 1 13 13 C 1.47735 * 119.99673 * 5.99838 * 11 2 1 14 14 C 1.39693 * 120.11401 * 214.97514 * 13 11 2 15 15 C 1.37959 * 119.97618 * 180.02562 * 14 13 11 16 16 C 1.38280 * 120.22375 * 0.02562 * 15 14 13 17 17 C 1.38934 * 120.24206 * 359.97438 * 16 15 14 18 18 N 1.40228 * 119.99057 * 179.97438 * 17 16 15 19 19 C 1.34713 * 126.84175 * 5.00032 * 18 17 16 20 20 N 1.30849 * 108.03162 * 180.02562 * 19 18 17 21 21 C 1.33261 * 109.84279 * 0.02562 * 20 19 18 22 22 N 1.30749 * 108.99819 * 0.22387 * 21 20 19 23 23 C 1.38569 * 120.01396 * 0.27519 * 17 16 15 24 24 H 1.08998 * 109.47115 * 204.95741 * 1 2 3 25 25 H 1.09008 * 109.46601 * 324.95175 * 1 2 3 26 26 H 1.08999 * 109.47673 * 84.95017 * 1 2 3 27 27 H 0.96997 * 119.99825 * 180.02562 * 6 5 3 28 28 H 1.07991 * 120.01464 * 0.02562 * 14 13 11 29 29 H 1.08004 * 119.88910 * 179.97438 * 15 14 13 30 30 H 1.08002 * 119.87921 * 180.02562 * 16 15 14 31 31 H 1.07999 * 125.98743 * 0.03931 * 19 18 17 32 32 H 1.08003 * 125.49860 * 179.97438 * 21 20 19 33 33 H 1.07995 * 120.11102 * 179.71695 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1853 0.0000 4 1 3.1477 1.2324 0.4093 5 6 1.5594 2.3288 -0.5270 6 7 0.4380 2.2364 -1.2049 7 14 2.3614 3.9963 -0.2710 8 1 3.3030 4.2692 -1.3862 9 1 1.3145 5.0492 -0.2380 10 1 3.1038 3.9963 1.0151 11 6 2.1389 -1.1673 -0.0005 12 8 3.3498 -1.1702 0.1096 13 6 1.4061 -2.4431 -0.1348 14 6 1.8510 -3.5814 0.5419 15 6 1.1649 -4.7714 0.4140 16 6 0.0370 -4.8425 -0.3829 17 6 -0.4135 -3.7161 -1.0600 18 7 -1.5575 -3.7943 -1.8672 19 6 -2.3736 -4.8564 -2.0109 20 7 -3.3223 -4.5276 -2.8500 21 6 -3.1471 -3.2723 -3.2616 22 7 -2.0769 -2.7829 -2.6917 23 6 0.2710 -2.5169 -0.9428 24 1 -0.3633 -0.9317 0.4336 25 1 -0.3633 0.8414 0.5902 26 1 -0.3634 0.0905 -1.0236 27 1 0.0266 3.0340 -1.5729 28 1 2.7316 -3.5298 1.1648 29 1 1.5102 -5.6507 0.9375 30 1 -0.4961 -5.7769 -0.4787 31 1 -2.2643 -5.8118 -1.5194 32 1 -3.7839 -2.7457 -3.9570 33 1 -0.0751 -1.6415 -1.4721 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359930086.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:03 Heat of formation + Delta-G solvation = 88.321163 kcal Electronic energy + Delta-G solvation = -20154.317388 eV Core-core repulsion = 16989.330215 eV Total energy + Delta-G solvation = -3164.987173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.30590 -41.16159 -39.32951 -36.85002 -35.11826 -33.96584 -32.62341 -31.91626 -30.46054 -28.34667 -26.96958 -25.09657 -24.61665 -22.92300 -22.22459 -21.12553 -19.26797 -18.86708 -17.72351 -17.31428 -16.88527 -16.83380 -16.65348 -15.94715 -15.88722 -15.44087 -14.98338 -14.77485 -14.54818 -14.05061 -13.76632 -13.44254 -13.23660 -13.17148 -12.78858 -12.71489 -12.51774 -12.31288 -12.13121 -11.83053 -11.15033 -11.11675 -10.96180 -10.62037 -9.97923 -9.79600 -9.43347 -8.42273 -6.11244 -0.33540 -0.00068 0.97616 1.19042 1.35925 1.37236 1.51206 1.88616 1.98079 2.21637 2.71004 2.91932 3.03242 3.36927 3.42315 3.76179 3.88092 3.98991 4.13518 4.19964 4.39868 4.42137 4.55974 4.81964 4.83628 4.97469 5.20301 5.25587 5.30437 5.34597 5.36935 5.42665 5.63148 6.00044 6.03986 6.35944 6.97603 7.02706 7.29230 7.86311 8.59324 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020652 B = 0.005672 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.487487 B = 4934.935582 C = 6158.395894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.129 3.871 2 N -0.446 5.446 3 C -0.351 4.351 4 H 0.078 0.922 5 C -0.001 4.001 6 N -0.893 5.893 7 Si 0.997 3.003 8 H -0.274 1.274 9 H -0.265 1.265 10 H -0.266 1.266 11 C 0.467 3.533 12 O -0.628 6.628 13 C -0.106 4.106 14 C -0.086 4.086 15 C -0.079 4.079 16 C -0.099 4.099 17 C 0.128 3.872 18 N -0.337 5.337 19 C 0.270 3.730 20 N -0.560 5.560 21 C 0.203 3.797 22 N -0.360 5.360 23 C -0.106 4.106 24 H 0.056 0.944 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.276 0.724 28 H 0.132 0.868 29 H 0.189 0.811 30 H 0.189 0.811 31 H 0.275 0.725 32 H 0.247 0.753 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 -15.826 1.364 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.014 4.014 2 N -0.162 5.162 3 C -0.479 4.479 4 H 0.096 0.904 5 C -0.204 4.204 6 N -0.530 5.530 7 Si 0.820 3.180 8 H -0.199 1.199 9 H -0.190 1.190 10 H -0.191 1.191 11 C 0.257 3.743 12 O -0.517 6.517 13 C -0.110 4.110 14 C -0.106 4.106 15 C -0.097 4.097 16 C -0.120 4.120 17 C 0.036 3.964 18 N -0.121 5.121 19 C -0.023 4.023 20 N -0.286 5.286 21 C -0.099 4.099 22 N -0.185 5.185 23 C -0.127 4.127 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.150 0.850 29 H 0.206 0.794 30 H 0.206 0.794 31 H 0.290 0.710 32 H 0.263 0.737 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.642 -15.103 1.076 16.960 hybrid contribution 0.468 1.505 -0.160 1.584 sum -7.174 -13.598 0.916 15.402 Atomic orbital electron populations 1.21593 0.79670 0.99027 1.01144 1.43693 1.06560 1.04842 1.61095 1.19677 1.01468 0.86297 1.40433 0.90449 1.26290 0.96877 1.03408 0.93838 1.70039 1.19299 1.31389 1.32262 0.84887 0.78037 0.76157 0.78964 1.19924 1.18976 1.19059 1.18793 0.87092 0.84687 0.83705 1.90548 1.15496 1.87793 1.57857 1.19902 0.95836 0.94778 1.00454 1.21542 0.99731 0.91707 0.97579 1.21393 0.93299 0.97676 0.97373 1.21448 0.97664 0.96836 0.96042 1.17614 0.87191 0.95707 0.95867 1.47766 1.20752 1.10931 1.32618 1.27216 0.85303 0.95232 0.94586 1.70660 1.26496 1.14784 1.16706 1.26758 0.93734 0.90659 0.98727 1.78303 1.15423 1.13686 1.11122 1.21203 0.94565 0.97929 0.98981 0.92515 0.93368 0.92882 0.91376 0.84970 0.79355 0.79393 0.70989 0.73736 0.86308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.29 7.10 127.77 0.91 7.19 16 2 N -0.45 -24.73 3.00 -662.31 -1.99 -26.71 16 3 C -0.35 -20.78 9.24 84.10 0.78 -20.01 16 4 H 0.08 4.81 7.42 -2.91 -0.02 4.79 16 5 C 0.00 -0.08 5.15 84.96 0.44 0.36 16 6 N -0.89 -49.16 10.74 21.68 0.23 -48.93 16 7 Si 1.00 43.31 29.57 68.60 2.03 45.34 16 8 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 9 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 11 C 0.47 24.83 7.31 86.75 0.63 25.46 16 12 O -0.63 -37.51 16.53 -4.00 -0.07 -37.57 16 13 C -0.11 -4.30 5.15 -20.10 -0.10 -4.40 16 14 C -0.09 -2.62 9.61 22.56 0.22 -2.40 16 15 C -0.08 -1.47 10.02 22.21 0.22 -1.25 16 16 C -0.10 -1.73 9.47 22.45 0.21 -1.51 16 17 C 0.13 3.57 6.68 38.04 0.25 3.82 16 18 N -0.34 -9.09 3.82 -191.37 -0.73 -9.82 16 19 C 0.27 5.13 11.97 180.27 2.16 7.29 16 20 N -0.56 -13.11 11.19 -203.74 -2.28 -15.39 16 21 C 0.20 5.17 13.03 180.75 2.35 7.53 16 22 N -0.36 -11.64 12.06 -61.21 -0.74 -12.38 16 23 C -0.11 -3.98 7.24 22.66 0.16 -3.82 16 24 H 0.06 2.43 5.76 -2.39 -0.01 2.42 16 25 H 0.05 2.42 7.47 -2.38 -0.02 2.40 16 26 H 0.05 2.75 6.20 -2.39 -0.01 2.74 16 27 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.13 4.06 8.00 -2.92 -0.02 4.04 16 29 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.19 1.10 6.82 -2.91 -0.02 1.08 16 31 H 0.27 1.59 7.12 -2.91 -0.02 1.57 16 32 H 0.25 4.36 8.06 -2.91 -0.02 4.34 16 33 H 0.12 5.28 5.23 -2.91 -0.02 5.27 16 Total: -1.00 -81.18 288.64 5.85 -75.33 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.16 Total: 11.87 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 8.24 Total: 18.27 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -5.50 Total: -113.24 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.07 Total: -37.57 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -81.18 5.85 -75.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359930086.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.655 kcal (2) G-P(sol) polarization free energy of solvation -81.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds