Wall clock time and date at job start Mon Mar 30 2020 01:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36145 * 125.90204 * 2 1 4 4 C 1.35913 * 105.97705 * 180.26289 * 3 2 1 5 5 N 1.40412 * 126.79904 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00076 * 359.97035 * 5 4 3 7 7 O 1.21571 * 119.99883 * 0.02562 * 6 5 4 8 8 C 1.47854 * 119.99754 * 179.97438 * 6 5 4 9 9 C 1.39927 * 120.02936 * 359.72894 * 8 6 5 10 10 C 1.38330 * 120.35765 * 179.68959 * 9 8 6 11 11 C 1.37752 * 120.40986 * 0.60743 * 10 9 8 12 12 C 1.40750 * 120.04731 * 359.67315 * 11 10 9 13 13 C 1.41431 * 120.18136 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99547 * 334.91906 * 13 12 11 15 15 C 1.39932 * 119.99873 * 154.92712 * 13 12 11 16 16 N 1.30821 * 120.00084 * 342.58693 * 15 13 12 17 17 Si 1.86805 * 119.99802 * 162.59469 * 15 13 12 18 18 H 1.48497 * 109.47103 * 59.99783 * 17 15 13 19 19 H 1.48494 * 109.47002 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47111 * 299.99383 * 17 15 13 21 21 C 1.39008 * 120.02594 * 180.02562 * 8 6 5 22 22 N 1.34047 * 106.40215 * 359.97438 * 4 3 2 23 23 N 1.28596 * 109.04483 * 0.02562 * 22 4 3 24 24 H 1.08991 * 109.46998 * 269.71971 * 1 2 3 25 25 H 1.09004 * 109.47025 * 29.71934 * 1 2 3 26 26 H 1.08994 * 109.46666 * 149.71543 * 1 2 3 27 27 H 1.07999 * 127.01189 * 0.22982 * 3 2 1 28 28 H 0.97008 * 119.99778 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.82097 * 359.97438 * 9 8 6 30 30 H 1.08000 * 119.79734 * 180.30455 * 10 9 8 31 31 H 1.08007 * 119.97440 * 179.69291 * 11 10 9 32 32 H 0.97010 * 120.00184 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.20024 * 359.97438 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2634 1.1028 0.0000 4 6 3.5412 0.6396 -0.0060 5 7 4.7151 1.4100 -0.0078 6 6 4.6381 2.7556 -0.0039 7 8 3.5522 3.3023 0.0016 8 6 5.8742 3.5668 -0.0052 9 6 7.1243 2.9381 -0.0047 10 6 8.2852 3.6903 -0.0124 11 6 8.2243 5.0665 -0.0081 12 6 6.9760 5.7167 -0.0027 13 6 6.9102 7.1295 0.0013 14 1 7.7325 7.7072 0.3969 15 6 5.7797 7.7787 -0.5072 16 7 4.9477 7.1323 -1.2827 17 14 5.4587 9.5684 -0.0788 18 1 6.5936 10.4016 -0.5509 19 1 4.2068 10.0184 -0.7386 20 1 5.3207 9.7080 1.3931 21 6 5.7955 4.9546 -0.0007 22 7 3.4588 -0.6983 -0.0087 23 7 2.2197 -1.0424 -0.0052 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3633 0.8925 -0.5095 26 1 -0.3632 -0.8874 -0.5182 27 1 1.9461 2.1351 0.0035 28 1 5.5815 0.9738 -0.0119 29 1 7.1832 1.8597 -0.0030 30 1 9.2452 3.1957 -0.0170 31 1 9.1352 5.6469 -0.0091 32 1 4.1641 7.5824 -1.6355 33 1 4.8328 5.4441 0.0033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361160318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:36 Heat of formation + Delta-G solvation = 88.620023 kcal Electronic energy + Delta-G solvation = -19619.930962 eV Core-core repulsion = 16454.956748 eV Total energy + Delta-G solvation = -3164.974213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.07550 -39.49510 -37.19602 -35.14142 -33.94456 -33.61588 -30.79956 -29.61247 -29.27962 -27.95662 -25.43000 -23.71169 -22.16607 -21.57685 -20.97811 -19.54378 -18.07280 -17.55240 -16.60275 -16.22865 -15.94640 -15.14754 -14.74089 -14.52978 -14.33414 -13.97235 -13.37789 -13.36346 -13.24079 -12.81488 -12.60670 -11.76212 -11.74867 -11.28056 -11.17043 -10.95337 -10.88785 -10.80029 -10.58183 -10.14987 -9.81671 -9.79252 -9.31625 -9.28555 -8.21666 -7.71926 -7.61203 -6.87861 -4.49523 1.64777 1.92685 2.31801 2.67893 2.78163 3.03022 3.04416 3.11144 3.20674 3.75965 3.86150 4.45756 4.54476 4.82029 4.84762 5.09859 5.25420 5.50183 5.50393 5.56955 5.79727 6.01776 6.19404 6.62490 6.64575 6.78407 6.89521 6.90505 7.12024 7.27001 7.52791 7.62332 7.76715 7.88284 8.07337 8.40182 8.58118 8.58883 8.72280 8.74307 10.07050 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.004596 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.678676 B = 6090.769099 C = 7204.117862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.296 5.296 3 C -0.061 4.061 4 C 0.215 3.785 5 N -0.634 5.634 6 C 0.574 3.426 7 O -0.530 6.530 8 C -0.126 4.126 9 C -0.217 4.217 10 C -0.095 4.095 11 C -0.207 4.207 12 C 0.099 3.901 13 C -0.459 4.459 14 H 0.082 0.918 15 C 0.074 3.926 16 N -0.785 5.785 17 Si 0.911 3.089 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.087 4.087 22 N -0.290 5.290 23 N -0.079 5.079 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.214 0.786 28 H 0.419 0.581 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.286 0.714 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.795 -7.242 1.607 10.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.094 5.094 3 C -0.212 4.212 4 C -0.014 4.014 5 N -0.283 5.283 6 C 0.366 3.634 7 O -0.407 6.407 8 C -0.129 4.129 9 C -0.237 4.237 10 C -0.113 4.113 11 C -0.227 4.227 12 C 0.096 3.904 13 C -0.488 4.488 14 H 0.100 0.900 15 C -0.145 4.145 16 N -0.409 5.409 17 Si 0.735 3.265 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.187 1.187 21 C -0.107 4.107 22 N -0.162 5.162 23 N -0.059 5.059 24 H 0.108 0.892 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.231 0.769 28 H 0.257 0.743 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.097 0.903 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.738 -8.288 1.451 11.431 hybrid contribution 0.111 1.632 0.038 1.637 sum -7.627 -6.656 1.489 10.232 Atomic orbital electron populations 1.22206 0.72616 1.05765 1.04839 1.47212 1.09222 1.04876 1.48110 1.24020 0.89543 0.94876 1.12785 1.18827 0.87812 0.89053 1.05734 1.42907 1.06163 1.05808 1.73432 1.19000 0.90587 0.79769 0.74080 1.90567 1.29664 1.71108 1.49328 1.19199 0.89993 0.94109 1.09630 1.20383 0.91989 0.96932 1.14412 1.20451 0.96153 0.94169 1.00542 1.21150 0.97040 0.93462 1.11069 1.17578 0.90406 0.93555 0.88827 1.19575 1.02353 0.91331 1.35536 0.89972 1.25960 0.94953 1.01022 0.92589 1.69772 1.10921 1.38887 1.21303 0.86308 0.78535 0.81558 0.80064 1.18907 1.20208 1.18671 1.21629 1.00169 0.90015 0.98881 1.75009 1.10151 1.10018 1.21003 1.78112 0.95388 1.12354 1.20028 0.89220 0.88192 0.88248 0.76936 0.74334 0.88934 0.88585 0.88403 0.90330 0.84679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 11.40 59.85 0.68 1.31 16 2 N -0.30 -3.98 3.76 -67.69 -0.25 -4.23 16 3 C -0.06 -0.98 10.48 -16.47 -0.17 -1.15 16 4 C 0.21 3.83 8.14 -153.37 -1.25 2.58 16 5 N -0.63 -11.39 5.41 -12.38 -0.07 -11.45 16 6 C 0.57 12.04 7.74 -12.33 -0.10 11.94 16 7 O -0.53 -11.96 13.58 5.30 0.07 -11.89 16 8 C -0.13 -2.84 5.87 -105.04 -0.62 -3.46 16 9 C -0.22 -4.41 9.55 -38.92 -0.37 -4.78 16 10 C -0.09 -1.95 10.01 -39.72 -0.40 -2.35 16 11 C -0.21 -4.73 9.78 -38.81 -0.38 -5.11 16 12 C 0.10 2.51 5.57 -106.87 -0.59 1.91 16 13 C -0.46 -11.61 9.05 -37.73 -0.34 -11.95 16 14 H 0.08 1.97 7.90 -52.49 -0.41 1.55 16 15 C 0.07 1.80 5.14 -17.35 -0.09 1.71 16 16 N -0.78 -19.91 10.97 55.55 0.61 -19.30 16 17 Si 0.91 18.07 29.59 -169.99 -5.03 13.04 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 19 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 C -0.09 -2.20 8.23 -38.44 -0.32 -2.52 16 22 N -0.29 -5.13 12.41 31.08 0.39 -4.75 16 23 N -0.08 -1.26 13.15 60.35 0.79 -0.46 16 24 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.21 3.45 6.00 -52.49 -0.31 3.13 16 28 H 0.42 6.64 6.84 -40.82 -0.28 6.36 16 29 H 0.09 1.56 6.38 -52.49 -0.33 1.23 16 30 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 32 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 33 H 0.14 3.66 5.77 -52.49 -0.30 3.36 16 LS Contribution 292.89 15.07 4.41 4.41 Total: -1.00 -29.93 292.89 -5.91 -35.84 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -2.89 Total: 10.66 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.94 Total: -11.86 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 1.47 Total: -40.20 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.07 Total: -11.89 kcal Atomic # 14 Polarization: 18.07 SS G_CDS: -5.03 Total: 13.04 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.93 -5.91 -35.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361160318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.461 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds