Wall clock time and date at job start Mon Mar 30 2020 01:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36145 * 125.90204 * 2 1 4 4 C 1.35913 * 105.97705 * 180.26289 * 3 2 1 5 5 N 1.40412 * 126.79904 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00076 * 359.97035 * 5 4 3 7 7 O 1.21571 * 119.99883 * 0.02562 * 6 5 4 8 8 C 1.47854 * 119.99754 * 179.97438 * 6 5 4 9 9 C 1.39927 * 120.02936 * 359.72894 * 8 6 5 10 10 C 1.38330 * 120.35765 * 179.68959 * 9 8 6 11 11 C 1.37752 * 120.40986 * 0.60743 * 10 9 8 12 12 C 1.40750 * 120.04731 * 359.67315 * 11 10 9 13 13 C 1.41431 * 120.18136 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99547 * 334.91906 * 13 12 11 15 15 C 1.39932 * 119.99873 * 154.92712 * 13 12 11 16 16 N 1.30821 * 120.00084 * 342.58693 * 15 13 12 17 17 Si 1.86805 * 119.99802 * 162.59469 * 15 13 12 18 18 H 1.48497 * 109.47103 * 59.99783 * 17 15 13 19 19 H 1.48494 * 109.47002 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47111 * 299.99383 * 17 15 13 21 21 C 1.39008 * 120.02594 * 180.02562 * 8 6 5 22 22 N 1.34047 * 106.40215 * 359.97438 * 4 3 2 23 23 N 1.28596 * 109.04483 * 0.02562 * 22 4 3 24 24 H 1.08991 * 109.46998 * 269.71971 * 1 2 3 25 25 H 1.09004 * 109.47025 * 29.71934 * 1 2 3 26 26 H 1.08994 * 109.46666 * 149.71543 * 1 2 3 27 27 H 1.07999 * 127.01189 * 0.22982 * 3 2 1 28 28 H 0.97008 * 119.99778 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.82097 * 359.97438 * 9 8 6 30 30 H 1.08000 * 119.79734 * 180.30455 * 10 9 8 31 31 H 1.08007 * 119.97440 * 179.69291 * 11 10 9 32 32 H 0.97010 * 120.00184 * 180.02562 * 16 15 13 33 33 H 1.08000 * 120.20024 * 359.97438 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2634 1.1028 0.0000 4 6 3.5412 0.6396 -0.0060 5 7 4.7151 1.4100 -0.0078 6 6 4.6381 2.7556 -0.0039 7 8 3.5522 3.3023 0.0016 8 6 5.8742 3.5668 -0.0052 9 6 7.1243 2.9381 -0.0047 10 6 8.2852 3.6903 -0.0124 11 6 8.2243 5.0665 -0.0081 12 6 6.9760 5.7167 -0.0027 13 6 6.9102 7.1295 0.0013 14 1 7.7325 7.7072 0.3969 15 6 5.7797 7.7787 -0.5072 16 7 4.9477 7.1323 -1.2827 17 14 5.4587 9.5684 -0.0788 18 1 6.5936 10.4016 -0.5509 19 1 4.2068 10.0184 -0.7386 20 1 5.3207 9.7080 1.3931 21 6 5.7955 4.9546 -0.0007 22 7 3.4588 -0.6983 -0.0087 23 7 2.2197 -1.0424 -0.0052 24 1 -0.3633 -0.0050 1.0276 25 1 -0.3633 0.8925 -0.5095 26 1 -0.3632 -0.8874 -0.5182 27 1 1.9461 2.1351 0.0035 28 1 5.5815 0.9738 -0.0119 29 1 7.1832 1.8597 -0.0030 30 1 9.2452 3.1957 -0.0170 31 1 9.1352 5.6469 -0.0091 32 1 4.1641 7.5824 -1.6355 33 1 4.8328 5.4441 0.0033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361160318.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:36 Heat of formation + Delta-G solvation = 69.784229 kcal Electronic energy + Delta-G solvation = -19620.747743 eV Core-core repulsion = 16454.956748 eV Total energy + Delta-G solvation = -3165.790995 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.30601 -41.11770 -38.92471 -36.49310 -35.61221 -34.97361 -32.42127 -31.34661 -30.74679 -28.85161 -27.23382 -25.27025 -23.44152 -23.04543 -22.62086 -21.16439 -19.54385 -19.07641 -17.74553 -17.67301 -17.52141 -16.77647 -16.41829 -16.04445 -15.78588 -15.39192 -15.09919 -14.51132 -14.29104 -14.24376 -13.89217 -13.49946 -12.99412 -12.95984 -12.80209 -12.55788 -12.26615 -12.20327 -12.12682 -11.90737 -11.52263 -11.06118 -10.99384 -10.98469 -9.71387 -9.41516 -9.35378 -8.65843 -6.37484 0.18362 0.48588 1.00488 1.24851 1.27522 1.39517 1.50324 1.53328 1.85712 2.11985 2.21279 2.77559 3.52011 3.67125 3.68297 3.84564 4.13210 4.33093 4.35903 4.46543 4.58264 4.62149 4.63132 4.89418 5.08106 5.16112 5.29585 5.37600 5.49518 5.58961 5.81346 5.90534 6.03880 6.22181 6.31575 6.58721 6.88242 6.92671 7.00181 7.32039 8.31120 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.004596 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.678676 B = 6090.769099 C = 7204.117862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.278 5.278 3 C -0.063 4.063 4 C 0.191 3.809 5 N -0.619 5.619 6 C 0.574 3.426 7 O -0.553 6.553 8 C -0.133 4.133 9 C -0.200 4.200 10 C -0.094 4.094 11 C -0.213 4.213 12 C 0.069 3.931 13 C -0.497 4.497 14 H 0.084 0.916 15 C 0.034 3.966 16 N -0.824 5.824 17 Si 0.981 3.019 18 H -0.255 1.255 19 H -0.271 1.271 20 H -0.261 1.261 21 C -0.121 4.121 22 N -0.309 5.309 23 N -0.082 5.082 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.121 0.879 27 H 0.211 0.789 28 H 0.428 0.572 29 H 0.134 0.866 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.288 0.712 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 -8.511 1.874 11.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.076 5.076 3 C -0.215 4.215 4 C -0.038 4.038 5 N -0.268 5.268 6 C 0.366 3.634 7 O -0.432 6.432 8 C -0.136 4.136 9 C -0.220 4.220 10 C -0.112 4.112 11 C -0.233 4.233 12 C 0.066 3.934 13 C -0.526 4.526 14 H 0.102 0.898 15 C -0.182 4.182 16 N -0.449 5.449 17 Si 0.801 3.199 18 H -0.179 1.179 19 H -0.196 1.196 20 H -0.185 1.185 21 C -0.142 4.142 22 N -0.180 5.180 23 N -0.063 5.063 24 H 0.131 0.869 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.228 0.772 28 H 0.268 0.732 29 H 0.152 0.848 30 H 0.156 0.844 31 H 0.128 0.872 32 H 0.099 0.901 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.810 -9.612 1.720 12.503 hybrid contribution 0.090 1.790 -0.035 1.792 sum -7.720 -7.822 1.685 11.119 Atomic orbital electron populations 1.22810 0.68983 1.07946 1.07056 1.47655 1.11059 1.03375 1.45531 1.24004 0.89608 0.95465 1.12441 1.19005 0.88096 0.89401 1.07295 1.42550 1.07021 1.04751 1.72477 1.18761 0.89796 0.80629 0.74251 1.90555 1.30242 1.71887 1.50470 1.19426 0.91787 0.93493 1.08945 1.20882 0.90860 0.99085 1.11135 1.20913 0.98134 0.93316 0.98818 1.21451 0.96551 0.94957 1.10318 1.17914 0.91484 0.94151 0.89804 1.19849 1.03526 0.91940 1.37327 0.89765 1.26787 0.94304 1.05234 0.91857 1.69859 1.11633 1.40726 1.22694 0.85265 0.78680 0.76268 0.79647 1.17915 1.19586 1.18490 1.21448 0.99165 0.91435 1.02114 1.74980 1.11198 1.09778 1.22067 1.78029 0.95235 1.12932 1.20074 0.86925 0.86140 0.86085 0.77241 0.73199 0.84834 0.84352 0.87210 0.90133 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 11.40 127.77 1.46 2.26 16 2 N -0.28 -6.91 3.76 -368.07 -1.39 -8.29 16 3 C -0.06 -1.96 10.48 83.48 0.87 -1.08 16 4 C 0.19 6.63 8.14 131.32 1.07 7.70 16 5 N -0.62 -21.57 5.41 -311.36 -1.68 -23.25 16 6 C 0.57 24.14 7.74 86.79 0.67 24.81 16 7 O -0.55 -25.56 13.58 -3.94 -0.05 -25.61 16 8 C -0.13 -6.01 5.87 -20.14 -0.12 -6.13 16 9 C -0.20 -7.65 9.55 22.70 0.22 -7.43 16 10 C -0.09 -3.61 10.01 22.18 0.22 -3.38 16 11 C -0.21 -9.60 9.78 22.77 0.22 -9.37 16 12 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 13 C -0.50 -26.07 9.05 23.47 0.21 -25.86 16 14 H 0.08 4.17 7.90 -2.91 -0.02 4.15 16 15 C 0.03 1.68 5.14 85.25 0.44 2.12 16 16 N -0.82 -43.78 10.97 21.82 0.24 -43.54 16 17 Si 0.98 37.94 29.59 68.60 2.03 39.97 16 18 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 19 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 20 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 21 C -0.12 -6.37 8.23 23.01 0.19 -6.18 16 22 N -0.31 -10.54 12.41 -55.57 -0.69 -11.23 16 23 N -0.08 -2.48 13.15 37.02 0.49 -1.99 16 24 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.21 6.75 6.00 -2.91 -0.02 6.74 16 28 H 0.43 12.70 6.84 -92.70 -0.63 12.06 16 29 H 0.13 3.97 6.38 -2.91 -0.02 3.95 16 30 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 31 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.29 14.07 8.30 -92.70 -0.77 13.30 16 33 H 0.11 6.15 5.77 -2.91 -0.02 6.14 16 Total: -1.00 -67.42 292.89 4.82 -62.60 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 0.54 Total: 30.44 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 5.34 Total: -19.08 kcal Atomic # 7 Polarization: -85.27 SS G_CDS: -3.03 Total: -88.31 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.05 Total: -25.61 kcal Atomic # 14 Polarization: 37.94 SS G_CDS: 2.03 Total: 39.97 kcal Total: -67.42 4.82 -62.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361160318.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.388 kcal (2) G-P(sol) polarization free energy of solvation -67.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds