Wall clock time and date at job start Mon Mar 30 2020 01:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34588 * 125.74304 * 2 1 4 4 N 1.30871 * 107.64526 * 179.97438 * 3 2 1 5 5 C 1.34598 * 107.26480 * 0.02562 * 4 3 2 6 6 C 1.47707 * 126.05718 * 179.97438 * 5 4 3 7 7 O 1.21585 * 120.00204 * 173.84222 * 6 5 4 8 8 N 1.34771 * 120.00017 * 354.12420 * 6 5 4 9 9 C 1.36930 * 120.00135 * 176.90487 * 8 6 5 10 10 H 1.08002 * 119.99728 * 113.82653 * 9 8 6 11 11 C 1.38966 * 120.00310 * 293.83192 * 9 8 6 12 12 N 1.31387 * 119.99803 * 305.38707 * 11 9 8 13 13 Si 1.86806 * 120.00187 * 125.38619 * 11 9 8 14 14 H 1.48501 * 109.46700 * 89.99715 * 13 11 9 15 15 H 1.48497 * 109.46923 * 210.00084 * 13 11 9 16 16 H 1.48498 * 109.46962 * 330.00072 * 13 11 9 17 17 C 1.39710 * 120.00082 * 356.91101 * 8 6 5 18 18 C 1.38975 * 120.08503 * 75.17968 * 17 8 6 19 19 C 1.38075 * 119.92210 * 179.74626 * 18 17 8 20 20 C 1.38313 * 120.07786 * 0.53152 * 19 18 17 21 21 C 1.38310 * 120.16005 * 359.72133 * 20 19 18 22 22 C 1.38073 * 120.07944 * 0.02562 * 21 20 19 23 23 N 1.28850 * 125.73948 * 180.31630 * 2 1 3 24 24 H 1.09007 * 109.46699 * 89.99688 * 1 2 3 25 25 H 1.08996 * 109.47176 * 209.99467 * 1 2 3 26 26 H 1.08999 * 109.46663 * 330.00542 * 1 2 3 27 27 H 1.07999 * 126.17845 * 359.96534 * 3 2 1 28 28 H 0.97001 * 119.99642 * 185.03748 * 12 11 9 29 29 H 1.08008 * 120.03443 * 359.97438 * 18 17 8 30 30 H 1.07998 * 119.96038 * 180.25081 * 19 18 17 31 31 H 1.08001 * 119.91874 * 179.70182 * 20 19 18 32 32 H 1.07999 * 119.95724 * 180.02562 * 21 20 19 33 33 H 1.08001 * 120.03938 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.0924 0.0000 4 7 3.4952 0.6858 0.0006 5 6 3.4757 -0.6600 0.0003 6 6 4.6570 -1.5467 0.0002 7 8 4.5148 -2.7489 0.1130 8 7 5.8929 -1.0226 -0.1191 9 6 6.9913 -1.8377 -0.0556 10 1 7.6153 -1.9718 -0.9268 11 6 7.3031 -2.4925 1.1298 12 7 7.4460 -1.8065 2.2413 13 14 7.5190 -4.3480 1.1432 14 1 8.9406 -4.6827 0.8744 15 1 7.1273 -4.8823 2.4721 16 1 6.6608 -4.9537 0.0935 17 6 6.0534 0.3524 -0.3075 18 6 5.8747 1.2271 0.7576 19 6 6.0393 2.5849 0.5689 20 6 6.3709 3.0759 -0.6809 21 6 6.5444 2.2089 -1.7445 22 6 6.3865 0.8494 -1.5619 23 7 2.2177 -1.0458 -0.0058 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3632 0.8900 0.5138 27 1 1.9161 2.1191 -0.0005 28 1 7.7349 -2.2525 3.0527 29 1 5.6110 0.8447 1.7328 30 1 5.9046 3.2648 1.3971 31 1 6.4943 4.1389 -0.8268 32 1 6.8036 2.5958 -2.7189 33 1 6.5217 0.1730 -2.3930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361718108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:21 Heat of formation + Delta-G solvation = 121.386724 kcal Electronic energy + Delta-G solvation = -20861.458526 eV Core-core repulsion = 17697.905184 eV Total energy + Delta-G solvation = -3163.553343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.88637 -39.04366 -37.30054 -34.31414 -34.14928 -32.18883 -31.21709 -29.98495 -28.49487 -27.73291 -25.14199 -23.05375 -22.03920 -21.50787 -21.28400 -19.44768 -17.50693 -17.27495 -16.33317 -15.99755 -15.28822 -15.06260 -14.80382 -14.21288 -13.83154 -13.66967 -13.37339 -13.23518 -12.72540 -12.53109 -12.48805 -11.88492 -11.74475 -11.32644 -11.22423 -10.81766 -10.51079 -10.33361 -10.12652 -9.93744 -9.87266 -9.01447 -8.91435 -8.53754 -7.94075 -7.64931 -7.31796 -6.45645 -4.04485 1.98564 2.31355 2.38268 2.60443 2.81827 3.28817 3.44464 3.66472 4.09187 4.41844 4.50448 4.60388 4.73294 4.83476 4.94764 4.96327 5.20938 5.27107 5.56586 5.70374 5.81775 5.94473 6.36108 6.48443 6.53283 6.76226 6.81809 6.95198 6.95970 7.27054 7.37124 7.48828 7.66940 7.84915 8.34995 8.53654 8.89093 8.99538 9.37266 10.04583 10.40250 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.009134 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.827337 B = 3064.720561 C = 4420.323727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.318 5.318 3 C 0.170 3.830 4 N -0.462 5.462 5 C 0.165 3.835 6 C 0.572 3.428 7 O -0.532 6.532 8 N -0.388 5.388 9 C -0.410 4.410 10 H 0.087 0.913 11 C 0.121 3.879 12 N -0.781 5.781 13 Si 0.880 3.120 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.254 1.254 17 C 0.180 3.820 18 C -0.061 4.061 19 C -0.120 4.120 20 C -0.142 4.142 21 C -0.125 4.125 22 C -0.126 4.126 23 N -0.274 5.274 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.216 0.784 28 H 0.273 0.727 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 10.297 -2.932 15.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.114 5.114 3 C -0.125 4.125 4 N -0.186 5.186 5 C -0.116 4.116 6 C 0.357 3.643 7 O -0.408 6.408 8 N -0.107 5.107 9 C -0.532 4.532 10 H 0.104 0.896 11 C -0.099 4.099 12 N -0.407 5.407 13 Si 0.704 3.296 14 H -0.208 1.208 15 H -0.211 1.211 16 H -0.178 1.178 17 C 0.090 3.910 18 C -0.081 4.081 19 C -0.139 4.139 20 C -0.160 4.160 21 C -0.144 4.144 22 C -0.145 4.145 23 N -0.111 5.111 24 H 0.102 0.898 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.232 0.768 28 H 0.083 0.917 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.513 9.196 -2.637 14.214 hybrid contribution -0.254 -0.412 0.279 0.559 sum -10.768 8.784 -2.358 14.094 Atomic orbital electron populations 1.22063 0.73511 1.05238 1.04231 1.47361 1.08677 1.04230 1.51109 1.26578 0.86704 0.95586 1.03671 1.71848 1.18529 1.09686 1.18572 1.24620 0.92454 0.89531 1.04993 1.17012 0.80714 0.85680 0.80932 1.90646 1.84439 1.13914 1.51771 1.40423 1.03578 1.02554 1.64174 1.18315 1.08607 1.28764 0.97490 0.89587 1.25459 0.90550 0.99629 0.94251 1.70440 1.29918 1.37650 1.02661 0.86817 0.77882 0.86255 0.78693 1.20765 1.21105 1.17790 1.18173 0.95080 0.85754 0.92007 1.21008 0.96624 0.92579 0.97889 1.20718 1.01824 0.94871 0.96494 1.20771 1.03551 0.98224 0.93498 1.20693 1.02521 0.93133 0.98059 1.21096 1.01954 0.94947 0.96531 1.74374 1.03370 1.12817 1.20579 0.89838 0.88734 0.88644 0.76769 0.91731 0.87364 0.87616 0.87740 0.87528 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 11.38 59.85 0.68 1.41 16 2 N -0.32 -4.70 3.72 -69.39 -0.26 -4.96 16 3 C 0.17 2.47 12.62 -90.48 -1.14 1.32 16 4 N -0.46 -9.11 7.34 -12.38 -0.09 -9.20 16 5 C 0.16 3.83 7.62 -156.32 -1.19 2.64 16 6 C 0.57 15.69 7.45 -12.39 -0.09 15.60 16 7 O -0.53 -16.08 16.38 5.29 0.09 -15.99 16 8 N -0.39 -10.52 2.56 -60.02 -0.15 -10.67 16 9 C -0.41 -11.79 8.36 -15.00 -0.13 -11.92 16 10 H 0.09 2.46 8.06 -52.49 -0.42 2.04 16 11 C 0.12 3.43 4.78 -17.47 -0.08 3.35 16 12 N -0.78 -22.08 13.95 55.50 0.77 -21.31 16 13 Si 0.88 22.27 29.37 -169.99 -4.99 17.28 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.25 -6.78 7.11 56.52 0.40 -6.37 16 17 C 0.18 4.27 3.53 -83.72 -0.30 3.98 16 18 C -0.06 -1.35 7.44 -39.37 -0.29 -1.64 16 19 C -0.12 -2.19 10.04 -39.61 -0.40 -2.59 16 20 C -0.14 -2.38 10.04 -39.53 -0.40 -2.78 16 21 C -0.13 -2.23 10.04 -39.62 -0.40 -2.62 16 22 C -0.13 -2.66 9.94 -39.37 -0.39 -3.05 16 23 N -0.27 -5.68 12.09 32.06 0.39 -5.29 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.22 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.27 7.12 8.32 -40.82 -0.34 6.78 16 29 H 0.11 2.60 8.06 -52.48 -0.42 2.18 16 30 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 31 H 0.10 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 33 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 299.09 15.07 4.51 4.51 Total: -1.00 -36.00 299.09 -7.23 -43.22 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -3.36 Total: -1.28 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -4.12 Total: 3.70 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.66 Total: -51.43 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.09 Total: -15.99 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.99 Total: 17.28 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.00 -7.23 -43.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361718108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.609 kcal (2) G-P(sol) polarization free energy of solvation -35.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds