Wall clock time and date at job start Mon Mar 30 2020 01:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34588 * 125.74304 * 2 1 4 4 N 1.30871 * 107.64526 * 179.97438 * 3 2 1 5 5 C 1.34598 * 107.26480 * 0.02562 * 4 3 2 6 6 C 1.47707 * 126.05718 * 179.97438 * 5 4 3 7 7 O 1.21585 * 120.00204 * 173.84222 * 6 5 4 8 8 N 1.34771 * 120.00017 * 354.12420 * 6 5 4 9 9 C 1.36930 * 120.00135 * 176.90487 * 8 6 5 10 10 H 1.08002 * 119.99728 * 113.82653 * 9 8 6 11 11 C 1.38966 * 120.00310 * 293.83192 * 9 8 6 12 12 N 1.31387 * 119.99803 * 305.38707 * 11 9 8 13 13 Si 1.86806 * 120.00187 * 125.38619 * 11 9 8 14 14 H 1.48501 * 109.46700 * 89.99715 * 13 11 9 15 15 H 1.48497 * 109.46923 * 210.00084 * 13 11 9 16 16 H 1.48498 * 109.46962 * 330.00072 * 13 11 9 17 17 C 1.39710 * 120.00082 * 356.91101 * 8 6 5 18 18 C 1.38975 * 120.08503 * 75.17968 * 17 8 6 19 19 C 1.38075 * 119.92210 * 179.74626 * 18 17 8 20 20 C 1.38313 * 120.07786 * 0.53152 * 19 18 17 21 21 C 1.38310 * 120.16005 * 359.72133 * 20 19 18 22 22 C 1.38073 * 120.07944 * 0.02562 * 21 20 19 23 23 N 1.28850 * 125.73948 * 180.31630 * 2 1 3 24 24 H 1.09007 * 109.46699 * 89.99688 * 1 2 3 25 25 H 1.08996 * 109.47176 * 209.99467 * 1 2 3 26 26 H 1.08999 * 109.46663 * 330.00542 * 1 2 3 27 27 H 1.07999 * 126.17845 * 359.96534 * 3 2 1 28 28 H 0.97001 * 119.99642 * 185.03748 * 12 11 9 29 29 H 1.08008 * 120.03443 * 359.97438 * 18 17 8 30 30 H 1.07998 * 119.96038 * 180.25081 * 19 18 17 31 31 H 1.08001 * 119.91874 * 179.70182 * 20 19 18 32 32 H 1.07999 * 119.95724 * 180.02562 * 21 20 19 33 33 H 1.08001 * 120.03938 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2513 1.0924 0.0000 4 7 3.4952 0.6858 0.0006 5 6 3.4757 -0.6600 0.0003 6 6 4.6570 -1.5467 0.0002 7 8 4.5148 -2.7489 0.1130 8 7 5.8929 -1.0226 -0.1191 9 6 6.9913 -1.8377 -0.0556 10 1 7.6153 -1.9718 -0.9268 11 6 7.3031 -2.4925 1.1298 12 7 7.4460 -1.8065 2.2413 13 14 7.5190 -4.3480 1.1432 14 1 8.9406 -4.6827 0.8744 15 1 7.1273 -4.8823 2.4721 16 1 6.6608 -4.9537 0.0935 17 6 6.0534 0.3524 -0.3075 18 6 5.8747 1.2271 0.7576 19 6 6.0393 2.5849 0.5689 20 6 6.3709 3.0759 -0.6809 21 6 6.5444 2.2089 -1.7445 22 6 6.3865 0.8494 -1.5619 23 7 2.2177 -1.0458 -0.0058 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3632 0.8900 0.5138 27 1 1.9161 2.1191 -0.0005 28 1 7.7349 -2.2525 3.0527 29 1 5.6110 0.8447 1.7328 30 1 5.9046 3.2648 1.3971 31 1 6.4943 4.1389 -0.8268 32 1 6.8036 2.5958 -2.7189 33 1 6.5217 0.1730 -2.3930 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361718108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:20 Heat of formation + Delta-G solvation = 98.115241 kcal Electronic energy + Delta-G solvation = -20862.467654 eV Core-core repulsion = 17697.905184 eV Total energy + Delta-G solvation = -3164.562470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.24565 -40.85191 -39.05759 -36.27302 -35.38979 -34.22162 -32.59439 -31.50619 -30.17068 -28.97691 -26.92219 -24.71959 -23.45943 -23.05418 -22.72053 -21.16996 -19.32123 -18.90054 -17.61608 -17.40492 -17.05634 -16.76591 -16.45750 -15.99625 -15.61459 -15.22175 -14.84979 -14.40665 -14.03905 -14.01058 -13.87572 -13.82950 -13.32649 -13.25361 -12.68737 -12.64782 -12.30179 -12.12621 -11.80212 -11.29056 -11.27596 -10.97305 -10.65221 -10.38836 -9.59591 -9.42520 -9.12525 -8.51679 -6.22651 0.49714 0.79695 0.86654 1.20041 1.35341 1.41824 1.55551 1.57548 2.12507 2.56761 2.64845 2.86766 3.28267 3.42350 3.69509 4.00938 4.32182 4.38059 4.39491 4.44869 4.50061 4.68118 4.86893 4.97090 4.98449 5.20487 5.36759 5.43346 5.53712 5.78255 5.84587 5.88038 6.01484 6.22958 6.41261 6.78633 6.83410 7.23143 7.35274 8.00660 8.28638 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.009134 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.827337 B = 3064.720561 C = 4420.323727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.305 5.305 3 C 0.190 3.810 4 N -0.485 5.485 5 C 0.127 3.873 6 C 0.556 3.444 7 O -0.585 6.585 8 N -0.395 5.395 9 C -0.439 4.439 10 H 0.072 0.928 11 C 0.090 3.910 12 N -0.805 5.805 13 Si 0.929 3.071 14 H -0.253 1.253 15 H -0.279 1.279 16 H -0.282 1.282 17 C 0.148 3.852 18 C -0.074 4.074 19 C -0.111 4.111 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.146 4.146 23 N -0.298 5.298 24 H 0.106 0.894 25 H 0.091 0.909 26 H 0.144 0.856 27 H 0.279 0.721 28 H 0.281 0.719 29 H 0.074 0.926 30 H 0.138 0.862 31 H 0.154 0.846 32 H 0.144 0.856 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.966 14.128 -3.303 18.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.101 5.101 3 C -0.105 4.105 4 N -0.210 5.210 5 C -0.152 4.152 6 C 0.343 3.657 7 O -0.466 6.466 8 N -0.113 5.113 9 C -0.561 4.561 10 H 0.089 0.911 11 C -0.128 4.128 12 N -0.432 5.432 13 Si 0.752 3.248 14 H -0.177 1.177 15 H -0.204 1.204 16 H -0.208 1.208 17 C 0.059 3.941 18 C -0.094 4.094 19 C -0.129 4.129 20 C -0.141 4.141 21 C -0.133 4.133 22 C -0.165 4.165 23 N -0.139 5.139 24 H 0.124 0.876 25 H 0.110 0.890 26 H 0.162 0.838 27 H 0.294 0.706 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.156 0.844 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.950 13.068 -3.006 17.962 hybrid contribution -0.004 -1.409 0.326 1.446 sum -11.954 11.659 -2.680 16.912 Atomic orbital electron populations 1.22692 0.69398 1.07563 1.06459 1.47824 1.10656 1.02976 1.48618 1.27638 0.85017 0.97483 1.00313 1.71707 1.21678 1.07856 1.19747 1.23686 0.91758 0.90610 1.09145 1.17579 0.82264 0.85904 0.79963 1.90561 1.85664 1.16101 1.54259 1.40503 1.03119 1.04170 1.63478 1.18345 1.09433 1.31018 0.97327 0.91066 1.26017 0.90555 1.02175 0.94069 1.70403 1.30821 1.38756 1.03195 0.86040 0.78712 0.82236 0.77858 1.17747 1.20403 1.20766 1.18316 0.97898 0.84138 0.93762 1.20781 0.98525 0.94302 0.95840 1.21040 1.00176 0.93246 0.98454 1.21261 1.00475 1.00409 0.91914 1.21085 1.00578 0.91357 1.00265 1.21159 1.03314 0.96822 0.95227 1.74237 1.03167 1.15674 1.20783 0.87592 0.89047 0.83780 0.70610 0.90899 0.90794 0.84413 0.82832 0.83875 0.88618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 11.38 127.77 1.45 2.40 16 2 N -0.30 -8.32 3.72 -373.44 -1.39 -9.71 16 3 C 0.19 4.88 12.62 180.30 2.27 7.16 16 4 N -0.48 -18.84 7.34 -193.10 -1.42 -20.26 16 5 C 0.13 6.14 7.62 137.04 1.04 7.19 16 6 C 0.56 32.66 7.45 86.75 0.65 33.30 16 7 O -0.59 -38.17 16.38 -3.98 -0.07 -38.24 16 8 N -0.40 -22.79 2.56 -462.07 -1.19 -23.98 16 9 C -0.44 -26.95 8.36 84.07 0.70 -26.24 16 10 H 0.07 4.41 8.06 -2.91 -0.02 4.39 16 11 C 0.09 5.36 4.78 84.93 0.41 5.77 16 12 N -0.81 -47.49 13.95 21.67 0.30 -47.19 16 13 Si 0.93 47.95 29.37 68.60 2.01 49.97 16 14 H -0.25 -11.76 7.11 99.48 0.71 -11.06 16 15 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 16 H -0.28 -15.76 7.11 99.48 0.71 -15.05 16 17 C 0.15 7.28 3.53 38.24 0.13 7.42 16 18 C -0.07 -3.32 7.44 22.41 0.17 -3.15 16 19 C -0.11 -3.70 10.04 22.25 0.22 -3.47 16 20 C -0.12 -3.52 10.04 22.30 0.22 -3.29 16 21 C -0.11 -3.70 10.04 22.25 0.22 -3.48 16 22 C -0.15 -6.23 9.94 22.41 0.22 -6.01 16 23 N -0.30 -12.53 12.09 -52.49 -0.63 -13.17 16 24 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.28 3.12 8.06 -2.91 -0.02 3.09 16 28 H 0.28 15.17 8.32 -92.71 -0.77 14.40 16 29 H 0.07 3.73 8.06 -2.91 -0.02 3.71 16 30 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 31 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 33 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -88.31 299.09 6.48 -81.84 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: 1.13 Total: 3.16 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 7.72 Total: 17.58 kcal Atomic # 7 Polarization: -109.98 SS G_CDS: -4.32 Total: -114.30 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.07 Total: -38.24 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.01 Total: 49.97 kcal Total: -88.31 6.48 -81.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361718108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.950 kcal (2) G-P(sol) polarization free energy of solvation -88.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds