Wall clock time and date at job start Mon Mar 30 2020 01:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36958 * 119.99613 * 2 1 4 4 H 1.07999 * 119.99753 * 187.62797 * 3 2 1 5 5 C 1.38986 * 120.00336 * 7.62408 * 3 2 1 6 6 N 1.31412 * 120.00142 * 8.08844 * 5 3 2 7 7 Si 1.86801 * 120.00393 * 188.08843 * 5 3 2 8 8 H 1.48500 * 109.46868 * 89.99820 * 7 5 3 9 9 H 1.48494 * 109.47298 * 209.99867 * 7 5 3 10 10 H 1.48498 * 109.46897 * 330.00163 * 7 5 3 11 11 C 1.34772 * 120.00459 * 179.97438 * 2 1 3 12 12 O 1.21646 * 119.99702 * 4.17677 * 11 2 1 13 13 C 1.47231 * 120.00253 * 184.16687 * 11 2 1 14 14 C 1.37985 * 126.81584 * 310.19588 * 13 11 2 15 15 N 1.34211 * 107.88307 * 179.97438 * 14 13 11 16 16 H 0.97004 * 125.16443 * 179.97438 * 15 14 13 17 17 N 1.39773 * 109.67948 * 359.97438 * 15 14 13 18 18 C 1.31386 * 109.08072 * 0.02562 * 17 15 14 19 19 C 1.48236 * 126.50704 * 179.97438 * 18 17 15 20 20 C 1.39386 * 119.73269 * 334.74319 * 19 18 17 21 21 C 1.38386 * 119.06285 * 179.73392 * 20 19 18 22 22 C 1.38797 * 118.51623 * 0.53491 * 21 20 19 23 23 C 1.38262 * 119.37400 * 359.73177 * 22 21 20 24 24 N 1.31754 * 120.89856 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.46834 * 174.60531 * 1 2 3 26 26 H 1.09003 * 109.46890 * 294.60229 * 1 2 3 27 27 H 1.09000 * 109.47101 * 54.60859 * 1 2 3 28 28 H 0.96997 * 120.00235 * 180.02562 * 6 5 3 29 29 H 1.08003 * 126.05324 * 359.97438 * 14 13 11 30 30 H 1.08004 * 120.46688 * 0.02562 * 20 19 18 31 31 H 1.07997 * 120.74127 * 180.28970 * 21 20 19 32 32 H 1.07996 * 120.31133 * 179.70587 * 22 21 20 33 33 H 1.07998 * 119.54680 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1861 0.0000 4 1 3.2226 1.1903 -0.1242 5 6 1.4640 2.3845 0.1597 6 7 0.1868 2.3745 0.4686 7 14 2.3579 4.0093 -0.0648 8 1 2.2656 4.4328 -1.4852 9 1 1.7335 5.0415 0.8010 10 1 3.7851 3.8451 0.3110 11 6 2.1390 -1.1671 0.0005 12 8 1.5332 -2.2192 -0.0757 13 6 3.6084 -1.1687 0.0932 14 6 4.4859 -0.4268 -0.6708 15 7 5.7322 -0.7206 -0.2689 16 1 6.5433 -0.3391 -0.6398 17 7 5.6843 -1.6596 0.7653 18 6 4.4297 -1.9583 1.0164 19 6 3.9379 -2.9125 2.0386 20 6 4.7619 -3.9518 2.4674 21 6 4.2907 -4.8313 3.4263 22 6 3.0055 -4.6496 3.9178 23 6 2.2401 -3.6003 3.4436 24 7 2.7149 -2.7735 2.5343 25 1 -0.3633 -1.0231 -0.0966 26 1 -0.3633 0.4279 0.9344 27 1 -0.3633 0.5952 -0.8378 28 1 -0.2919 3.2108 0.5797 29 1 4.2172 0.2672 -1.4535 30 1 5.7557 -4.0662 2.0604 31 1 4.9079 -5.6434 3.7814 32 1 2.6069 -5.3218 4.6632 33 1 1.2396 -3.4566 3.8238 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362700015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:38 Heat of formation + Delta-G solvation = 99.013471 kcal Electronic energy + Delta-G solvation = -20450.091013 eV Core-core repulsion = 17285.567493 eV Total energy + Delta-G solvation = -3164.523520 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.62180 -39.45857 -37.79525 -34.56707 -32.61922 -32.10116 -31.30501 -29.82430 -29.65532 -26.12911 -24.53241 -23.89208 -23.22230 -21.39923 -20.12630 -18.97410 -18.20410 -16.52885 -16.03493 -15.78850 -15.59155 -15.28874 -14.43182 -14.18022 -13.92354 -13.76712 -13.52722 -13.26349 -12.95888 -12.56978 -12.34641 -11.60159 -11.37986 -11.28778 -10.96782 -10.68266 -10.55342 -10.38998 -10.23460 -9.84618 -9.50199 -9.05685 -8.98024 -8.51247 -8.32437 -7.87518 -7.67580 -6.18518 -3.76723 1.08195 1.57836 2.30542 2.89716 3.07398 3.13991 3.19136 3.21767 4.07772 4.15711 4.33926 4.44438 4.87311 5.05434 5.13078 5.18759 5.28318 5.32677 5.48478 5.64705 5.85955 6.00278 6.17054 6.33406 6.35083 6.44252 6.79127 6.95331 7.13584 7.32842 7.46223 7.57075 7.63639 7.87717 7.91112 8.40502 8.52052 9.18241 9.71284 10.12477 10.74701 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.006518 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.690203 B = 4294.954560 C = 4989.112942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.441 5.441 3 C -0.326 4.326 4 H 0.101 0.899 5 C 0.031 3.969 6 N -0.875 5.875 7 Si 0.921 3.079 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.272 1.272 11 C 0.534 3.466 12 O -0.598 6.598 13 C -0.192 4.192 14 C 0.078 3.922 15 N -0.471 5.471 16 H 0.438 0.562 17 N -0.287 5.287 18 C 0.143 3.857 19 C 0.213 3.787 20 C -0.149 4.149 21 C -0.083 4.083 22 C -0.176 4.176 23 C 0.107 3.893 24 N -0.432 5.432 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.265 0.735 29 H 0.190 0.810 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.456 -6.768 2.645 11.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.158 5.158 3 C -0.454 4.454 4 H 0.119 0.881 5 C -0.172 4.172 6 N -0.515 5.515 7 Si 0.748 3.252 8 H -0.203 1.203 9 H -0.208 1.208 10 H -0.197 1.197 11 C 0.322 3.678 12 O -0.484 6.484 13 C -0.207 4.207 14 C -0.068 4.068 15 N -0.180 5.180 16 H 0.281 0.719 17 N -0.111 5.111 18 C -0.025 4.025 19 C 0.074 3.926 20 C -0.170 4.170 21 C -0.109 4.109 22 C -0.197 4.197 23 C -0.051 4.051 24 N -0.141 5.141 25 H 0.054 0.946 26 H 0.093 0.907 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.207 0.793 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 8.600 -6.605 2.639 11.160 hybrid contribution 0.538 0.874 -0.217 1.049 sum 9.138 -5.730 2.422 11.054 Atomic orbital electron populations 1.21486 0.79597 0.97504 1.03164 1.43484 1.06042 1.04431 1.61870 1.19891 0.93368 0.83056 1.49081 0.88141 1.25273 0.95857 0.99486 0.96626 1.70176 1.08363 1.27036 1.45928 0.86018 0.79218 0.81718 0.78233 1.20349 1.20834 1.19718 1.16676 0.84573 0.83788 0.82798 1.90593 1.69102 1.31458 1.57265 1.21403 0.95549 1.02418 1.01346 1.23081 0.83976 0.99167 1.00590 1.45739 1.07669 1.35138 1.29434 0.71896 1.77001 1.18604 1.09141 1.06377 1.21201 0.89607 0.96252 0.95428 1.18386 0.89677 0.91716 0.92791 1.22034 1.00993 0.95561 0.98433 1.21421 0.95715 0.98308 0.95494 1.22193 0.95534 0.99929 1.02037 1.22759 0.99804 0.90371 0.92214 1.67674 1.11827 1.27094 1.07493 0.94554 0.90677 0.93218 0.92416 0.79298 0.84637 0.84931 0.84970 0.82624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 3.27 8.88 59.85 0.53 3.80 16 2 N -0.44 -11.76 3.02 -123.49 -0.37 -12.13 16 3 C -0.33 -8.40 9.14 -14.98 -0.14 -8.54 16 4 H 0.10 2.39 4.45 -52.49 -0.23 2.16 16 5 C 0.03 0.79 5.38 -17.45 -0.09 0.69 16 6 N -0.88 -23.24 9.67 55.50 0.54 -22.70 16 7 Si 0.92 19.55 29.56 -169.99 -5.03 14.52 16 8 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 11 C 0.53 13.98 6.81 -12.61 -0.09 13.90 16 12 O -0.60 -16.95 15.86 5.24 0.08 -16.87 16 13 C -0.19 -4.37 5.45 -102.95 -0.56 -4.93 16 14 C 0.08 1.43 9.75 -16.60 -0.16 1.26 16 15 N -0.47 -7.32 7.20 30.83 0.22 -7.10 16 16 H 0.44 4.72 8.96 -182.84 -1.64 3.08 16 17 N -0.29 -5.26 12.53 34.57 0.43 -4.83 16 18 C 0.14 3.01 7.11 -80.56 -0.57 2.44 16 19 C 0.21 4.25 6.71 -82.96 -0.56 3.70 16 20 C -0.15 -2.34 9.75 -39.10 -0.38 -2.72 16 21 C -0.08 -1.07 10.17 -39.32 -0.40 -1.47 16 22 C -0.18 -2.28 10.11 -39.37 -0.40 -2.68 16 23 C 0.11 1.77 11.17 -17.58 -0.20 1.57 16 24 N -0.43 -9.12 8.98 -9.79 -0.09 -9.21 16 25 H 0.04 0.93 6.91 -51.93 -0.36 0.57 16 26 H 0.07 2.04 6.71 -51.93 -0.35 1.69 16 27 H 0.05 1.29 7.46 -51.93 -0.39 0.90 16 28 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.19 3.00 7.37 -52.48 -0.39 2.61 16 30 H 0.14 1.88 8.04 -52.48 -0.42 1.46 16 31 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 290.98 15.07 4.38 4.38 Total: -1.00 -34.00 290.98 -7.02 -41.02 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -4.18 Total: 5.87 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -3.01 Total: 7.04 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.73 Total: -55.98 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.08 Total: -16.87 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.00 -7.02 -41.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362700015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.037 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds