Wall clock time and date at job start Mon Mar 30 2020 01:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36958 * 119.99613 * 2 1 4 4 H 1.07999 * 119.99753 * 187.62797 * 3 2 1 5 5 C 1.38986 * 120.00336 * 7.62408 * 3 2 1 6 6 N 1.31412 * 120.00142 * 8.08844 * 5 3 2 7 7 Si 1.86801 * 120.00393 * 188.08843 * 5 3 2 8 8 H 1.48500 * 109.46868 * 89.99820 * 7 5 3 9 9 H 1.48494 * 109.47298 * 209.99867 * 7 5 3 10 10 H 1.48498 * 109.46897 * 330.00163 * 7 5 3 11 11 C 1.34772 * 120.00459 * 179.97438 * 2 1 3 12 12 O 1.21646 * 119.99702 * 4.17677 * 11 2 1 13 13 C 1.47231 * 120.00253 * 184.16687 * 11 2 1 14 14 C 1.37985 * 126.81584 * 310.19588 * 13 11 2 15 15 N 1.34211 * 107.88307 * 179.97438 * 14 13 11 16 16 H 0.97004 * 125.16443 * 179.97438 * 15 14 13 17 17 N 1.39773 * 109.67948 * 359.97438 * 15 14 13 18 18 C 1.31386 * 109.08072 * 0.02562 * 17 15 14 19 19 C 1.48236 * 126.50704 * 179.97438 * 18 17 15 20 20 C 1.39386 * 119.73269 * 334.74319 * 19 18 17 21 21 C 1.38386 * 119.06285 * 179.73392 * 20 19 18 22 22 C 1.38797 * 118.51623 * 0.53491 * 21 20 19 23 23 C 1.38262 * 119.37400 * 359.73177 * 22 21 20 24 24 N 1.31754 * 120.89856 * 359.97438 * 23 22 21 25 25 H 1.08997 * 109.46834 * 174.60531 * 1 2 3 26 26 H 1.09003 * 109.46890 * 294.60229 * 1 2 3 27 27 H 1.09000 * 109.47101 * 54.60859 * 1 2 3 28 28 H 0.96997 * 120.00235 * 180.02562 * 6 5 3 29 29 H 1.08003 * 126.05324 * 359.97438 * 14 13 11 30 30 H 1.08004 * 120.46688 * 0.02562 * 20 19 18 31 31 H 1.07997 * 120.74127 * 180.28970 * 21 20 19 32 32 H 1.07996 * 120.31133 * 179.70587 * 22 21 20 33 33 H 1.07998 * 119.54680 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1861 0.0000 4 1 3.2226 1.1903 -0.1242 5 6 1.4640 2.3845 0.1597 6 7 0.1868 2.3745 0.4686 7 14 2.3579 4.0093 -0.0648 8 1 2.2656 4.4328 -1.4852 9 1 1.7335 5.0415 0.8010 10 1 3.7851 3.8451 0.3110 11 6 2.1390 -1.1671 0.0005 12 8 1.5332 -2.2192 -0.0757 13 6 3.6084 -1.1687 0.0932 14 6 4.4859 -0.4268 -0.6708 15 7 5.7322 -0.7206 -0.2689 16 1 6.5433 -0.3391 -0.6398 17 7 5.6843 -1.6596 0.7653 18 6 4.4297 -1.9583 1.0164 19 6 3.9379 -2.9125 2.0386 20 6 4.7619 -3.9518 2.4674 21 6 4.2907 -4.8313 3.4263 22 6 3.0055 -4.6496 3.9178 23 6 2.2401 -3.6003 3.4436 24 7 2.7149 -2.7735 2.5343 25 1 -0.3633 -1.0231 -0.0966 26 1 -0.3633 0.4279 0.9344 27 1 -0.3633 0.5952 -0.8378 28 1 -0.2919 3.2108 0.5797 29 1 4.2172 0.2672 -1.4535 30 1 5.7557 -4.0662 2.0604 31 1 4.9079 -5.6434 3.7814 32 1 2.6069 -5.3218 4.6632 33 1 1.2396 -3.4566 3.8238 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362700015.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:38 Heat of formation + Delta-G solvation = 74.741953 kcal Electronic energy + Delta-G solvation = -20451.143505 eV Core-core repulsion = 17285.567493 eV Total energy + Delta-G solvation = -3165.576012 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.07363 -40.69577 -39.75754 -36.58396 -33.90437 -33.34009 -33.27205 -31.43766 -30.95932 -28.11703 -26.46794 -25.17349 -24.43082 -23.05157 -21.50514 -20.75037 -19.89104 -17.83454 -17.69555 -17.46361 -16.92988 -16.46816 -16.17737 -15.90394 -15.70825 -15.47663 -14.91609 -14.63636 -14.43700 -14.15118 -13.72680 -13.29930 -13.25037 -12.77673 -12.64355 -12.59801 -12.31286 -12.07776 -11.97932 -11.13287 -11.01258 -10.74189 -10.40844 -10.23119 -9.84951 -9.72770 -9.32531 -8.13076 -5.78827 -0.15552 0.44316 0.83415 1.36122 1.47148 1.52330 1.59023 1.79537 2.28067 2.39097 2.99874 3.05583 3.23833 3.39589 3.70152 3.96044 4.09762 4.21551 4.25104 4.36489 4.55498 4.64510 4.79660 4.86386 4.95693 5.17570 5.20384 5.24203 5.37993 5.48602 5.51088 5.82243 5.86956 6.29757 6.50978 6.55922 7.17538 7.20343 7.73263 8.13602 8.82386 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.006518 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.690203 B = 4294.954560 C = 4989.112942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.142 3.858 2 N -0.457 5.457 3 C -0.344 4.344 4 H 0.119 0.881 5 C -0.018 4.018 6 N -0.909 5.909 7 Si 0.995 3.005 8 H -0.266 1.266 9 H -0.289 1.289 10 H -0.258 1.258 11 C 0.533 3.467 12 O -0.632 6.632 13 C -0.252 4.252 14 C 0.106 3.894 15 N -0.444 5.444 16 H 0.461 0.539 17 N -0.283 5.283 18 C 0.130 3.870 19 C 0.167 3.833 20 C -0.147 4.147 21 C -0.073 4.073 22 C -0.154 4.154 23 C 0.079 3.921 24 N -0.491 5.491 25 H 0.029 0.971 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.266 0.734 29 H 0.215 0.785 30 H 0.151 0.849 31 H 0.182 0.818 32 H 0.178 0.822 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.225 -7.078 3.118 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 N -0.175 5.175 3 C -0.472 4.472 4 H 0.136 0.864 5 C -0.218 4.218 6 N -0.549 5.549 7 Si 0.818 3.182 8 H -0.192 1.192 9 H -0.215 1.215 10 H -0.182 1.182 11 C 0.322 3.678 12 O -0.521 6.521 13 C -0.267 4.267 14 C -0.043 4.043 15 N -0.155 5.155 16 H 0.310 0.690 17 N -0.107 5.107 18 C -0.037 4.037 19 C 0.029 3.971 20 C -0.168 4.168 21 C -0.098 4.098 22 C -0.174 4.174 23 C -0.079 4.079 24 N -0.201 5.201 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.232 0.768 30 H 0.169 0.831 31 H 0.199 0.801 32 H 0.195 0.805 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.432 -6.916 3.103 13.716 hybrid contribution -0.325 0.863 -0.304 0.971 sum 11.107 -6.053 2.798 12.955 Atomic orbital electron populations 1.21209 0.80407 0.96574 1.01939 1.43724 1.05956 1.05319 1.62461 1.20359 0.94347 0.82897 1.49584 0.86359 1.26266 0.96648 1.02971 0.95906 1.70312 1.09937 1.27943 1.46698 0.84896 0.78437 0.76491 0.78367 1.19168 1.21470 1.18186 1.17190 0.86261 0.82962 0.81370 1.90532 1.70474 1.32587 1.58501 1.21289 0.94173 1.06319 1.04900 1.23271 0.84037 0.97552 0.99456 1.45751 1.07979 1.33721 1.28053 0.69002 1.76952 1.17273 1.09600 1.06924 1.21551 0.89886 0.96525 0.95751 1.18641 0.90477 0.93667 0.94300 1.22263 1.01062 0.94734 0.98735 1.21993 0.95912 0.98265 0.93663 1.22627 0.95046 0.98417 1.01299 1.23136 1.00937 0.91542 0.92329 1.67509 1.13239 1.29726 1.09639 0.95234 0.92335 0.93775 0.92393 0.76844 0.83121 0.80077 0.80473 0.81916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.81 8.88 127.77 1.13 8.94 16 2 N -0.46 -25.24 3.02 -662.83 -2.00 -27.25 16 3 C -0.34 -17.89 9.14 84.07 0.77 -17.12 16 4 H 0.12 5.52 4.45 -2.91 -0.01 5.51 16 5 C -0.02 -0.92 5.38 84.93 0.46 -0.46 16 6 N -0.91 -49.35 9.67 21.67 0.21 -49.14 16 7 Si 0.99 39.43 29.56 68.60 2.03 41.46 16 8 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 9 H -0.29 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 11 C 0.53 28.97 6.81 86.61 0.59 29.56 16 12 O -0.63 -37.71 15.86 -4.18 -0.07 -37.78 16 13 C -0.25 -11.57 5.45 -18.78 -0.10 -11.68 16 14 C 0.11 3.69 9.75 84.27 0.82 4.52 16 15 N -0.44 -12.75 7.20 -56.38 -0.41 -13.16 16 16 H 0.46 8.35 8.96 -213.52 -1.91 6.43 16 17 N -0.28 -10.00 12.53 -44.53 -0.56 -10.56 16 18 C 0.13 5.53 7.11 44.07 0.31 5.84 16 19 C 0.17 6.76 6.71 41.95 0.28 7.04 16 20 C -0.15 -4.38 9.75 22.58 0.22 -4.16 16 21 C -0.07 -1.61 10.17 22.44 0.23 -1.38 16 22 C -0.15 -3.56 10.11 22.41 0.23 -3.33 16 23 C 0.08 2.62 11.17 84.71 0.95 3.57 16 24 N -0.49 -21.52 8.98 -184.88 -1.66 -23.18 16 25 H 0.03 1.60 6.91 -2.39 -0.02 1.58 16 26 H 0.06 3.37 6.71 -2.39 -0.02 3.35 16 27 H 0.04 2.40 7.46 -2.39 -0.02 2.38 16 28 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 29 H 0.22 6.26 7.37 -2.91 -0.02 6.24 16 30 H 0.15 3.87 8.04 -2.91 -0.02 3.85 16 31 H 0.18 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.18 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.16 4.78 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -78.48 290.98 2.69 -75.79 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: -0.74 Total: 22.48 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 5.89 Total: 21.33 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -4.42 Total: -123.28 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -0.07 Total: -37.78 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -78.48 2.69 -75.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362700015.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.534 kcal (2) G-P(sol) polarization free energy of solvation -78.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds