Wall clock time and date at job start Mon Mar 30 2020 01:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30487 * 125.72138 * 2 1 4 4 C 1.34150 * 109.36662 * 179.97438 * 3 2 1 5 5 C 1.34632 * 108.21416 * 0.02562 * 4 3 2 6 6 N 1.35925 * 125.72154 * 179.69947 * 2 1 3 7 7 C 1.39829 * 126.48299 * 359.97335 * 6 2 1 8 8 C 1.39057 * 119.59454 * 179.73102 * 7 6 2 9 9 C 1.38221 * 119.20487 * 179.77055 * 8 7 6 10 10 C 1.39567 * 118.41184 * 0.49313 * 9 8 7 11 11 N 1.39534 * 120.43768 * 179.77092 * 10 9 8 12 12 C 1.34778 * 120.00397 * 324.98738 * 11 10 9 13 13 O 1.21765 * 119.99439 * 4.67203 * 12 11 10 14 14 C 1.41823 * 120.00359 * 184.67120 * 12 11 10 15 15 H 1.08000 * 119.99917 * 359.97438 * 14 12 11 16 16 C 1.40131 * 119.99898 * 180.02562 * 14 12 11 17 17 N 1.30630 * 120.00122 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99927 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46818 * 89.99996 * 18 16 14 20 20 H 1.48501 * 109.47130 * 210.00075 * 18 16 14 21 21 H 1.48494 * 109.46961 * 330.00264 * 18 16 14 22 22 C 1.38996 * 119.12503 * 359.74938 * 10 9 8 23 23 N 1.31807 * 120.70743 * 359.97438 * 22 10 9 24 24 H 1.08999 * 109.46874 * 90.02369 * 1 2 3 25 25 H 1.08998 * 109.47407 * 210.02095 * 1 2 3 26 26 H 1.08995 * 109.47179 * 330.02325 * 1 2 3 27 27 H 1.08008 * 125.89680 * 179.97438 * 4 3 2 28 28 H 1.08003 * 126.58734 * 179.97438 * 5 4 3 29 29 H 1.08003 * 120.39395 * 359.97438 * 8 7 6 30 30 H 1.07997 * 120.79465 * 180.26436 * 9 8 7 31 31 H 0.97004 * 120.00408 * 144.98673 * 11 10 9 32 32 H 0.97004 * 120.00180 * 180.02562 * 17 16 14 33 33 H 1.07997 * 119.64308 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2689 1.0594 0.0000 4 6 3.5561 0.6816 0.0006 5 6 3.5998 -0.6640 0.0004 6 7 2.3006 -1.1035 0.0058 7 6 1.8733 -2.4349 0.0133 8 6 2.8147 -3.4583 0.0129 9 6 2.3833 -4.7714 0.0252 10 6 1.0098 -5.0193 0.0270 11 7 0.5278 -6.3287 0.0344 12 6 1.1919 -7.2951 -0.6301 13 8 2.2564 -7.0444 -1.1655 14 6 0.6508 -8.6039 -0.7058 15 1 -0.2931 -8.8263 -0.2305 16 6 1.3416 -9.6087 -1.3963 17 7 2.4841 -9.3401 -1.9698 18 14 0.6293 -11.3328 -1.4953 19 1 -0.2332 -11.4436 -2.6991 20 1 1.7345 -12.3205 -1.5855 21 1 -0.1796 -11.6047 -0.2801 22 6 0.1285 -3.9445 0.0218 23 7 0.5780 -2.7054 0.0157 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3634 -0.8898 0.5141 26 1 -0.3633 0.8901 0.5134 27 1 4.4101 1.3429 0.0003 28 1 4.4874 -1.2792 0.0003 29 1 3.8702 -3.2298 0.0064 30 1 3.0922 -5.5862 0.0295 31 1 -0.2853 -6.5435 0.5179 32 1 2.9621 -10.0356 -2.4481 33 1 -0.9360 -4.1266 0.0227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363758908.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:43 Heat of formation + Delta-G solvation = 50.666921 kcal Electronic energy + Delta-G solvation = -19656.525637 eV Core-core repulsion = 16489.905653 eV Total energy + Delta-G solvation = -3166.619983 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.37667 -41.38360 -39.49642 -36.07379 -34.76946 -34.26011 -33.52779 -32.35604 -30.32634 -28.43141 -27.80416 -25.14175 -24.72038 -22.40417 -21.88829 -21.20020 -19.57660 -19.10600 -18.01962 -17.68725 -17.10696 -16.92736 -16.10701 -15.88244 -15.39289 -15.02229 -14.89254 -14.66919 -14.57321 -14.17264 -13.97988 -13.79464 -13.49598 -13.21881 -13.04084 -12.82431 -12.73138 -12.04171 -12.01402 -11.27463 -11.16131 -10.97318 -10.79419 -10.50411 -9.85569 -9.44715 -8.81933 -8.42114 -7.05000 -0.29324 0.14255 1.18518 1.40508 1.41602 1.46031 1.57442 2.05650 2.19132 2.32659 2.71965 2.81862 3.24476 3.55727 3.58009 3.64618 3.86261 3.92667 4.13561 4.40743 4.50863 4.54231 4.76741 4.82513 4.92246 5.01704 5.16193 5.20919 5.25614 5.32934 5.73976 5.83810 6.07545 6.10528 6.22829 6.64093 6.71776 7.04210 7.29970 8.31590 8.51108 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.049306 B = 0.003696 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.748338 B = 7573.067055 C = 8017.141701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.215 3.785 3 N -0.520 5.520 4 C -0.030 4.030 5 C -0.063 4.063 6 N -0.405 5.405 7 C 0.281 3.719 8 C -0.145 4.145 9 C -0.084 4.084 10 C 0.121 3.879 11 N -0.683 5.683 12 C 0.529 3.471 13 O -0.612 6.612 14 C -0.559 4.559 15 H 0.095 0.905 16 C 0.034 3.966 17 N -0.799 5.799 18 Si 0.999 3.001 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.246 1.246 22 C 0.090 3.910 23 N -0.473 5.473 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.092 0.908 27 H 0.203 0.797 28 H 0.204 0.796 29 H 0.158 0.842 30 H 0.132 0.868 31 H 0.414 0.586 32 H 0.279 0.721 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 9.097 5.101 10.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.046 4.046 3 N -0.240 5.240 4 C -0.176 4.176 5 C -0.193 4.193 6 N -0.086 5.086 7 C 0.052 3.948 8 C -0.168 4.168 9 C -0.113 4.113 10 C 0.019 3.981 11 N -0.327 5.327 12 C 0.339 3.661 13 O -0.499 6.499 14 C -0.594 4.594 15 H 0.113 0.887 16 C -0.185 4.185 17 N -0.427 5.427 18 Si 0.818 3.182 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.169 1.169 22 C -0.072 4.072 23 N -0.184 5.184 24 H 0.099 0.901 25 H 0.117 0.883 26 H 0.111 0.889 27 H 0.219 0.781 28 H 0.221 0.779 29 H 0.175 0.825 30 H 0.150 0.850 31 H 0.251 0.749 32 H 0.090 0.910 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.405 10.533 4.607 11.990 hybrid contribution 0.777 -2.371 -0.072 2.496 sum -2.628 8.162 4.535 9.700 Atomic orbital electron populations 1.20454 0.82881 1.05057 1.04108 1.24321 0.97270 0.80229 1.02783 1.70308 1.03426 1.28498 1.21723 1.22846 0.95027 0.93111 1.06579 1.23246 0.86606 0.97262 1.12167 1.42968 1.07954 1.03953 1.53743 1.18137 0.90311 0.82901 1.03417 1.21567 1.01137 0.90837 1.03216 1.21688 0.95976 0.96564 0.97108 1.19216 0.93603 0.87465 0.97781 1.43671 1.30112 1.05037 1.53910 1.17448 0.84529 0.85575 0.78594 1.90608 1.24911 1.82495 1.51924 1.20599 1.09077 0.93889 1.35847 0.88655 1.26976 0.93940 1.05532 0.92049 1.70137 1.13192 1.35918 1.23414 0.84986 0.78505 0.74481 0.80246 1.18689 1.19905 1.16926 1.22801 1.00889 0.84197 0.99325 1.66936 1.13702 1.23060 1.14712 0.90054 0.88283 0.88910 0.78068 0.77884 0.82472 0.85038 0.74933 0.91032 0.78485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.62 9.71 71.24 0.69 -0.93 16 2 C 0.22 6.50 7.90 137.85 1.09 7.59 16 3 N -0.52 -16.00 11.24 -187.51 -2.11 -18.11 16 4 C -0.03 -0.78 11.85 83.51 0.99 0.21 16 5 C -0.06 -1.62 10.83 83.03 0.90 -0.72 16 6 N -0.40 -12.24 2.98 -342.20 -1.02 -13.26 16 7 C 0.28 8.97 7.50 132.78 1.00 9.97 16 8 C -0.15 -4.70 9.50 22.46 0.21 -4.48 16 9 C -0.08 -3.27 8.80 22.59 0.20 -3.07 16 10 C 0.12 4.45 6.32 38.42 0.24 4.69 16 11 N -0.68 -26.99 5.32 -311.00 -1.65 -28.65 16 12 C 0.53 27.33 7.43 85.13 0.63 27.96 16 13 O -0.61 -36.60 12.34 -4.56 -0.06 -36.66 16 14 C -0.56 -28.20 9.32 23.62 0.22 -27.98 16 15 H 0.10 4.19 7.85 -2.91 -0.02 4.17 16 16 C 0.03 1.70 5.50 85.33 0.47 2.17 16 17 N -0.80 -44.62 11.73 21.85 0.26 -44.37 16 18 Si 1.00 36.79 29.56 68.60 2.03 38.82 16 19 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 20 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 21 H -0.25 -8.35 7.11 99.48 0.71 -7.65 16 22 C 0.09 2.67 11.12 84.88 0.94 3.62 16 23 N -0.47 -14.53 7.28 -192.06 -1.40 -15.93 16 24 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.10 2.43 6.01 -2.39 -0.01 2.42 16 26 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.20 3.65 8.06 -2.91 -0.02 3.63 16 28 H 0.20 3.79 7.12 -2.91 -0.02 3.77 16 29 H 0.16 4.17 6.78 -2.91 -0.02 4.15 16 30 H 0.13 5.97 6.31 -2.91 -0.02 5.95 16 31 H 0.41 13.11 8.78 -92.71 -0.81 12.30 16 32 H 0.28 14.13 8.29 -92.71 -0.77 13.36 16 33 H 0.20 4.36 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -70.69 291.10 3.99 -66.70 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: 0.36 Total: 32.41 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 7.59 Total: 19.04 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -5.93 Total: -120.31 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -0.06 Total: -36.66 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Total: -70.69 3.99 -66.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363758908.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.363 kcal (2) G-P(sol) polarization free energy of solvation -70.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds