Wall clock time and date at job start Mon Mar 30 2020 01:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34584 * 126.73494 * 2 1 4 4 N 1.30653 * 108.31233 * 180.02562 * 3 2 1 5 5 C 1.34025 * 109.79291 * 359.97438 * 4 3 2 6 6 C 1.48236 * 125.66421 * 180.02562 * 5 4 3 7 7 C 1.39558 * 120.03590 * 179.73004 * 6 5 4 8 8 C 1.37726 * 119.96352 * 179.74031 * 7 6 5 9 9 C 1.39249 * 120.03603 * 0.50730 * 8 7 6 10 10 N 1.39187 * 119.96710 * 179.74628 * 9 8 7 11 11 C 1.34775 * 119.99822 * 213.61015 * 10 9 8 12 12 O 1.21785 * 120.00516 * 5.28005 * 11 10 9 13 13 C 1.41672 * 119.99583 * 185.27500 * 11 10 9 14 14 H 1.07994 * 120.00290 * 359.97438 * 13 11 10 15 15 C 1.40141 * 119.99569 * 180.02562 * 13 11 10 16 16 N 1.30631 * 120.00050 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99810 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46884 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47193 * 119.99582 * 17 15 13 20 20 H 1.48498 * 109.47204 * 239.99775 * 17 15 13 21 21 C 1.39264 * 120.07216 * 359.76679 * 9 8 7 22 22 C 1.37719 * 120.03481 * 359.97299 * 21 9 8 23 23 N 1.31628 * 108.67689 * 0.02562 * 5 4 3 24 24 H 1.09004 * 109.46682 * 270.02435 * 1 2 3 25 25 H 1.08997 * 109.46926 * 30.02360 * 1 2 3 26 26 H 1.08996 * 109.46683 * 150.02373 * 1 2 3 27 27 H 1.07991 * 125.84057 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.01863 * 359.96718 * 7 6 5 29 29 H 1.08002 * 119.98210 * 180.25051 * 8 7 6 30 30 H 0.97001 * 119.99814 * 33.60603 * 10 9 8 31 31 H 0.97005 * 119.99361 * 179.97438 * 16 15 13 32 32 H 1.07991 * 119.98264 * 179.97438 * 21 9 8 33 33 H 1.08001 * 120.02100 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2701 1.0786 0.0000 4 7 3.5096 0.6657 -0.0006 5 6 3.5417 -0.6742 -0.0004 6 6 4.7663 -1.5094 -0.0003 7 6 4.6627 -2.9011 0.0056 8 6 5.8015 -3.6757 0.0002 9 6 7.0558 -3.0709 -0.0004 10 7 8.2058 -3.8551 -0.0005 11 6 9.3104 -3.4314 0.6451 12 8 9.2743 -2.4105 1.3082 13 6 10.5134 -4.1738 0.5524 14 1 10.5453 -5.0794 -0.0351 15 6 11.6619 -3.7335 1.2242 16 7 11.6231 -2.6384 1.9353 17 14 13.2484 -4.7119 1.1015 18 1 13.0303 -5.9028 0.2414 19 1 14.3106 -3.8603 0.5083 20 1 13.6654 -5.1508 2.4574 21 6 7.1610 -1.6823 -0.0005 22 6 6.0242 -0.9049 -0.0006 23 7 2.3052 -1.1254 -0.0002 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3632 -0.8902 -0.5135 27 1 1.9467 2.1089 -0.0004 28 1 3.6900 -3.3705 0.0107 29 1 5.7217 -4.7528 0.0007 30 1 8.2121 -4.7066 -0.4651 31 1 12.4180 -2.3339 2.4005 32 1 8.1345 -1.2148 -0.0006 33 1 6.1060 0.1720 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370377974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:01 Heat of formation + Delta-G solvation = 81.724830 kcal Electronic energy + Delta-G solvation = -19194.368814 eV Core-core repulsion = 16029.095603 eV Total energy + Delta-G solvation = -3165.273211 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.89838 -39.11248 -37.03433 -34.34813 -33.36328 -32.42910 -31.35364 -30.25459 -29.25294 -27.20266 -26.16647 -22.92291 -22.60822 -21.35433 -20.56535 -19.60404 -17.51917 -17.28219 -16.25489 -15.96343 -15.63477 -15.28640 -14.89588 -14.22062 -13.83328 -13.52404 -13.43917 -13.38198 -12.96893 -12.61869 -12.45892 -11.90664 -11.78440 -11.58057 -11.22044 -11.13312 -10.67801 -10.57825 -10.31009 -10.01414 -9.88350 -9.79885 -9.10615 -8.73611 -8.36833 -7.71496 -6.94715 -6.37944 -4.91070 1.29731 2.00750 2.09279 2.28685 3.04018 3.13203 3.17701 3.26586 3.97938 4.14847 4.32217 4.33840 4.59557 4.68242 4.78151 4.83745 5.07324 5.17022 5.54568 5.59673 5.72793 6.02374 6.15296 6.28173 6.34069 6.41190 6.68304 6.72067 6.99109 7.12665 7.17163 7.23224 7.44069 7.86828 8.03485 8.17165 8.19841 8.79783 9.27108 10.37596 10.57949 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.059357 B = 0.003272 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.609286 B = 8554.628695 C = 8913.674871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.394 5.394 3 C 0.251 3.749 4 N -0.536 5.536 5 C 0.291 3.709 6 C -0.082 4.082 7 C -0.057 4.057 8 C -0.188 4.188 9 C 0.218 3.782 10 N -0.699 5.699 11 C 0.541 3.459 12 O -0.563 6.563 13 C -0.537 4.537 14 H 0.071 0.929 15 C 0.087 3.913 16 N -0.745 5.745 17 Si 0.913 3.087 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.274 1.274 21 C -0.138 4.138 22 C -0.050 4.050 23 N -0.323 5.323 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.217 0.783 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.393 0.607 31 H 0.273 0.727 32 H 0.143 0.857 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.574 3.548 -4.892 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.186 5.186 3 C -0.046 4.046 4 N -0.263 5.263 5 C 0.012 3.988 6 C -0.086 4.086 7 C -0.078 4.078 8 C -0.209 4.209 9 C 0.116 3.884 10 N -0.342 5.342 11 C 0.350 3.650 12 O -0.446 6.446 13 C -0.572 4.572 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.373 5.373 17 Si 0.737 3.263 18 H -0.186 1.186 19 H -0.199 1.199 20 H -0.199 1.199 21 C -0.159 4.159 22 C -0.071 4.071 23 N -0.151 5.151 24 H 0.095 0.905 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.233 0.767 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.227 0.773 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.418 3.868 -4.280 18.349 hybrid contribution 0.337 -0.633 -0.178 0.739 sum -17.082 3.234 -4.457 17.947 Atomic orbital electron populations 1.21867 0.74132 1.04644 1.03566 1.50374 1.07858 1.04561 1.55807 1.25994 0.85928 0.95359 0.97338 1.70538 1.20055 1.11182 1.24509 1.22447 0.91619 0.88502 0.96183 1.17250 0.88086 0.91170 1.12135 1.20727 0.97972 0.91877 0.97227 1.20768 0.91088 0.99469 1.09615 1.18173 0.87017 0.91368 0.91811 1.44253 1.11609 1.22630 1.55660 1.17071 0.82074 0.86401 0.79420 1.90677 1.83598 1.26925 1.43438 1.20075 0.94203 1.10997 1.31944 0.91085 1.25775 1.00239 0.94422 0.93173 1.70023 1.29069 1.17948 1.20250 0.86223 0.81009 0.80256 0.78800 1.18561 1.19903 1.19945 1.21291 0.99505 0.92374 1.02761 1.20995 0.90360 0.99999 0.95712 1.78300 1.01231 1.06943 1.28604 0.90495 0.89164 0.89215 0.76668 0.86099 0.86077 0.77349 0.91646 0.83892 0.85451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.53 59.85 0.69 1.26 16 2 N -0.39 -4.53 4.04 -69.44 -0.28 -4.81 16 3 C 0.25 2.82 12.64 -90.66 -1.15 1.68 16 4 N -0.54 -8.59 10.81 -12.39 -0.13 -8.72 16 5 C 0.29 5.08 7.77 -156.55 -1.22 3.87 16 6 C -0.08 -1.53 5.88 -104.80 -0.62 -2.15 16 7 C -0.06 -1.00 9.67 -39.28 -0.38 -1.38 16 8 C -0.19 -3.40 9.95 -39.39 -0.39 -3.79 16 9 C 0.22 4.66 6.27 -83.76 -0.53 4.14 16 10 N -0.70 -15.77 5.30 -12.43 -0.07 -15.84 16 11 C 0.54 14.96 7.29 -14.95 -0.11 14.85 16 12 O -0.56 -17.57 12.55 5.11 0.06 -17.51 16 13 C -0.54 -14.52 9.31 -37.56 -0.35 -14.87 16 14 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 15 C 0.09 2.32 5.50 -17.35 -0.10 2.23 16 16 N -0.75 -21.43 11.73 55.56 0.65 -20.78 16 17 Si 0.91 19.26 29.56 -169.99 -5.02 14.24 16 18 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 C -0.14 -3.05 8.63 -39.39 -0.34 -3.39 16 22 C -0.05 -0.98 9.68 -39.28 -0.38 -1.36 16 23 N -0.32 -5.13 12.33 32.09 0.40 -4.73 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.22 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.12 1.89 7.83 -52.49 -0.41 1.48 16 29 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.39 7.52 8.77 -40.82 -0.36 7.16 16 31 H 0.27 7.05 8.29 -40.82 -0.34 6.71 16 32 H 0.14 3.54 6.41 -52.49 -0.34 3.21 16 33 H 0.13 2.38 7.83 -52.49 -0.41 1.97 16 LS Contribution 299.28 15.07 4.51 4.51 Total: -1.00 -36.23 299.28 -7.92 -44.15 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -3.18 Total: 8.43 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -4.86 Total: 1.08 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.57 Total: -54.90 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.06 Total: -17.51 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -36.23 -7.92 -44.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370377974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.872 kcal (2) G-P(sol) polarization free energy of solvation -36.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds