Wall clock time and date at job start Mon Mar 30 2020 01:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.34584 * 126.73494 * 2 1 4 4 N 1.30653 * 108.31233 * 180.02562 * 3 2 1 5 5 C 1.34025 * 109.79291 * 359.97438 * 4 3 2 6 6 C 1.48236 * 125.66421 * 180.02562 * 5 4 3 7 7 C 1.39558 * 120.03590 * 179.73004 * 6 5 4 8 8 C 1.37726 * 119.96352 * 179.74031 * 7 6 5 9 9 C 1.39249 * 120.03603 * 0.50730 * 8 7 6 10 10 N 1.39187 * 119.96710 * 179.74628 * 9 8 7 11 11 C 1.34775 * 119.99822 * 213.61015 * 10 9 8 12 12 O 1.21785 * 120.00516 * 5.28005 * 11 10 9 13 13 C 1.41672 * 119.99583 * 185.27500 * 11 10 9 14 14 H 1.07994 * 120.00290 * 359.97438 * 13 11 10 15 15 C 1.40141 * 119.99569 * 180.02562 * 13 11 10 16 16 N 1.30631 * 120.00050 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99810 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46884 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47193 * 119.99582 * 17 15 13 20 20 H 1.48498 * 109.47204 * 239.99775 * 17 15 13 21 21 C 1.39264 * 120.07216 * 359.76679 * 9 8 7 22 22 C 1.37719 * 120.03481 * 359.97299 * 21 9 8 23 23 N 1.31628 * 108.67689 * 0.02562 * 5 4 3 24 24 H 1.09004 * 109.46682 * 270.02435 * 1 2 3 25 25 H 1.08997 * 109.46926 * 30.02360 * 1 2 3 26 26 H 1.08996 * 109.46683 * 150.02373 * 1 2 3 27 27 H 1.07991 * 125.84057 * 359.97438 * 3 2 1 28 28 H 1.08002 * 120.01863 * 359.96718 * 7 6 5 29 29 H 1.08002 * 119.98210 * 180.25051 * 8 7 6 30 30 H 0.97001 * 119.99814 * 33.60603 * 10 9 8 31 31 H 0.97005 * 119.99361 * 179.97438 * 16 15 13 32 32 H 1.07991 * 119.98264 * 179.97438 * 21 9 8 33 33 H 1.08001 * 120.02100 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2701 1.0786 0.0000 4 7 3.5096 0.6657 -0.0006 5 6 3.5417 -0.6742 -0.0004 6 6 4.7663 -1.5094 -0.0003 7 6 4.6627 -2.9011 0.0056 8 6 5.8015 -3.6757 0.0002 9 6 7.0558 -3.0709 -0.0004 10 7 8.2058 -3.8551 -0.0005 11 6 9.3104 -3.4314 0.6451 12 8 9.2743 -2.4105 1.3082 13 6 10.5134 -4.1738 0.5524 14 1 10.5453 -5.0794 -0.0351 15 6 11.6619 -3.7335 1.2242 16 7 11.6231 -2.6384 1.9353 17 14 13.2484 -4.7119 1.1015 18 1 13.0303 -5.9028 0.2414 19 1 14.3106 -3.8603 0.5083 20 1 13.6654 -5.1508 2.4574 21 6 7.1610 -1.6823 -0.0005 22 6 6.0242 -0.9049 -0.0006 23 7 2.3052 -1.1254 -0.0002 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3632 -0.8902 -0.5135 27 1 1.9467 2.1089 -0.0004 28 1 3.6900 -3.3705 0.0107 29 1 5.7217 -4.7528 0.0007 30 1 8.2121 -4.7066 -0.4651 31 1 12.4180 -2.3339 2.4005 32 1 8.1345 -1.2148 -0.0006 33 1 6.1060 0.1720 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370377974.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:01 Heat of formation + Delta-G solvation = 56.917482 kcal Electronic energy + Delta-G solvation = -19195.444541 eV Core-core repulsion = 16029.095603 eV Total energy + Delta-G solvation = -3166.348939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.94203 -40.82798 -38.84703 -35.72564 -34.81817 -34.40092 -32.58257 -31.76787 -30.71960 -28.72598 -27.46486 -24.43055 -23.94571 -22.54721 -22.09680 -21.20846 -19.43649 -18.37275 -17.82394 -17.59795 -16.87968 -16.58683 -16.19846 -15.81698 -15.38488 -15.02580 -14.67379 -14.49471 -14.25654 -14.08958 -14.01784 -13.45881 -13.26830 -12.92214 -12.80245 -12.67880 -12.66291 -12.13594 -11.97225 -11.37488 -11.02870 -10.97295 -10.84309 -10.30452 -10.01417 -9.73493 -8.62300 -8.38552 -7.02004 -0.05674 0.54368 0.89165 1.39693 1.40948 1.49514 1.59384 1.98016 2.21733 2.40720 2.92301 3.03748 3.13635 3.53329 3.65327 3.99558 4.06246 4.12468 4.41639 4.47636 4.51026 4.72407 4.73151 4.80744 5.01004 5.15995 5.22599 5.28816 5.49267 5.51651 5.63300 5.82790 5.89888 5.99711 6.18058 6.39861 6.73893 7.10502 7.39083 8.38316 8.56767 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.059357 B = 0.003272 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.609286 B = 8554.628695 C = 8913.674871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.387 5.387 3 C 0.264 3.736 4 N -0.579 5.579 5 C 0.262 3.738 6 C -0.075 4.075 7 C -0.053 4.053 8 C -0.168 4.168 9 C 0.186 3.814 10 N -0.692 5.692 11 C 0.527 3.473 12 O -0.612 6.612 13 C -0.562 4.562 14 H 0.093 0.907 15 C 0.030 3.970 16 N -0.800 5.800 17 Si 1.003 2.997 18 H -0.245 1.245 19 H -0.268 1.268 20 H -0.267 1.267 21 C -0.158 4.158 22 C -0.055 4.055 23 N -0.339 5.339 24 H 0.092 0.908 25 H 0.131 0.869 26 H 0.090 0.910 27 H 0.272 0.728 28 H 0.147 0.853 29 H 0.154 0.846 30 H 0.409 0.591 31 H 0.279 0.721 32 H 0.103 0.897 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.879 2.752 -5.552 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.178 5.178 3 C -0.032 4.032 4 N -0.307 5.307 5 C -0.017 4.017 6 C -0.079 4.079 7 C -0.073 4.073 8 C -0.189 4.189 9 C 0.086 3.914 10 N -0.336 5.336 11 C 0.337 3.663 12 O -0.499 6.499 13 C -0.597 4.597 14 H 0.111 0.889 15 C -0.188 4.188 16 N -0.429 5.429 17 Si 0.822 3.178 18 H -0.167 1.167 19 H -0.192 1.192 20 H -0.192 1.192 21 C -0.179 4.179 22 C -0.075 4.075 23 N -0.169 5.169 24 H 0.111 0.889 25 H 0.150 0.850 26 H 0.109 0.891 27 H 0.287 0.713 28 H 0.165 0.835 29 H 0.172 0.828 30 H 0.245 0.755 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.815 3.054 -4.976 20.657 hybrid contribution 0.701 -0.239 0.001 0.741 sum -19.114 2.815 -4.975 19.950 Atomic orbital electron populations 1.22383 0.70623 1.06793 1.05271 1.50722 1.09594 1.03426 1.54056 1.26956 0.84466 0.97178 0.94608 1.70464 1.23121 1.10758 1.26324 1.22206 0.91592 0.89257 0.98604 1.17483 0.88355 0.92165 1.09867 1.21008 0.98804 0.91412 0.96120 1.21024 0.89548 1.01103 1.07230 1.18358 0.87836 0.91005 0.94214 1.43755 1.11051 1.23288 1.55520 1.17442 0.83603 0.85937 0.79321 1.90637 1.84801 1.28857 1.45629 1.20607 0.94637 1.11831 1.32619 0.88897 1.27064 1.04526 0.95299 0.91942 1.70181 1.30772 1.20305 1.21600 0.84890 0.75013 0.78683 0.79231 1.16733 1.19245 1.19222 1.21048 0.98542 0.93414 1.04920 1.20927 0.90435 0.99908 0.96269 1.78141 1.01054 1.09432 1.28255 0.88948 0.85041 0.89128 0.71295 0.83501 0.82838 0.75513 0.91067 0.87866 0.85386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.53 127.77 1.47 2.12 16 2 N -0.39 -7.65 4.04 -373.61 -1.51 -9.16 16 3 C 0.26 5.11 12.64 180.36 2.28 7.39 16 4 N -0.58 -17.92 10.81 -193.11 -2.09 -20.01 16 5 C 0.26 8.98 7.77 137.36 1.07 10.05 16 6 C -0.07 -2.80 5.88 -19.98 -0.12 -2.92 16 7 C -0.05 -1.79 9.67 22.47 0.22 -1.57 16 8 C -0.17 -5.94 9.95 22.39 0.22 -5.72 16 9 C 0.19 8.21 6.27 38.46 0.24 8.45 16 10 N -0.69 -32.26 5.30 -311.42 -1.65 -33.91 16 11 C 0.53 30.53 7.29 85.09 0.62 31.15 16 12 O -0.61 -40.73 12.55 -4.62 -0.06 -40.79 16 13 C -0.56 -31.08 9.31 23.58 0.22 -30.86 16 14 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 15 C 0.03 1.62 5.50 85.33 0.47 2.09 16 16 N -0.80 -47.94 11.73 21.85 0.26 -47.68 16 17 Si 1.00 39.63 29.56 68.60 2.03 41.66 16 18 H -0.24 -8.88 7.11 99.48 0.71 -8.17 16 19 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 20 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 21 C -0.16 -7.49 8.63 22.39 0.19 -7.30 16 22 C -0.05 -2.27 9.68 22.47 0.22 -2.05 16 23 N -0.34 -10.13 12.33 -52.39 -0.65 -10.78 16 24 H 0.09 0.46 8.14 -2.38 -0.02 0.44 16 25 H 0.13 -0.08 8.14 -2.39 -0.02 -0.10 16 26 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.27 1.70 8.06 -2.92 -0.02 1.68 16 28 H 0.15 4.23 7.83 -2.91 -0.02 4.21 16 29 H 0.15 4.37 8.06 -2.91 -0.02 4.35 16 30 H 0.41 15.77 8.77 -92.71 -0.81 14.96 16 31 H 0.28 15.02 8.29 -92.70 -0.77 14.25 16 32 H 0.10 5.68 6.41 -2.92 -0.02 5.66 16 33 H 0.13 5.14 7.83 -2.91 -0.02 5.12 16 Total: -1.00 -85.02 299.28 3.78 -81.24 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.35 Total: 28.60 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 7.10 Total: 10.84 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -5.64 Total: -121.54 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.06 Total: -40.79 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -85.02 3.78 -81.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370377974.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.156 kcal (2) G-P(sol) polarization free energy of solvation -85.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds