Wall clock time and date at job start Mon Mar 30 2020 01:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36872 * 119.99816 * 2 1 4 4 H 1.08010 * 119.99745 * 200.07598 * 3 2 1 5 5 C 1.39040 * 120.00662 * 20.07238 * 3 2 1 6 6 N 1.31373 * 119.99670 * 17.22421 * 5 3 2 7 7 Si 1.86797 * 120.00423 * 197.22425 * 5 3 2 8 8 H 1.48494 * 109.47153 * 94.98309 * 7 5 3 9 9 H 1.48500 * 109.47178 * 214.98181 * 7 5 3 10 10 H 1.48498 * 109.47157 * 334.98202 * 7 5 3 11 11 C 1.34776 * 119.99929 * 179.97438 * 2 1 3 12 12 O 1.21591 * 119.99810 * 183.92860 * 11 2 1 13 13 C 1.47747 * 120.00133 * 3.93628 * 11 2 1 14 14 C 1.39727 * 120.09375 * 140.57822 * 13 11 2 15 15 C 1.37992 * 120.08847 * 180.23338 * 14 13 11 16 16 C 1.38180 * 120.27987 * 359.79150 * 15 14 13 17 17 C 1.39425 * 120.18370 * 0.02562 * 16 15 14 18 18 C 1.48422 * 120.04599 * 179.97438 * 17 16 15 19 19 N 1.33977 * 125.65283 * 359.97438 * 18 17 16 20 20 C 1.30681 * 109.78157 * 179.97438 * 19 18 17 21 21 N 1.34515 * 108.29270 * 359.97438 * 20 19 18 22 22 H 0.97003 * 126.74234 * 180.02562 * 21 20 19 23 23 N 1.31498 * 125.65113 * 179.66668 * 18 17 16 24 24 C 1.39076 * 119.91013 * 359.97438 * 17 16 15 25 25 H 1.09002 * 109.47636 * 264.91351 * 1 2 3 26 26 H 1.09007 * 109.46767 * 24.91116 * 1 2 3 27 27 H 1.09001 * 109.47110 * 144.91174 * 1 2 3 28 28 H 0.96991 * 119.99902 * 180.02562 * 6 5 3 29 29 H 1.07994 * 119.95525 * 359.97438 * 14 13 11 30 30 H 1.07998 * 119.86375 * 179.77208 * 15 14 13 31 31 H 1.08001 * 119.91286 * 179.97438 * 16 15 14 32 32 H 1.07995 * 125.84933 * 180.02562 * 20 19 18 33 33 H 1.07993 * 120.14132 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1802 1.2138 -0.3211 5 6 1.5176 2.3530 0.4132 6 7 0.4067 2.2869 1.1114 7 14 2.2483 4.0155 -0.0242 8 1 1.6078 4.5273 -1.2624 9 1 2.0084 4.9698 1.0880 10 1 3.7095 3.8711 -0.2461 11 6 2.1389 -1.1672 0.0005 12 8 3.3526 -1.1684 0.0727 13 6 1.4028 -2.4453 -0.0867 14 6 1.9072 -3.4928 -0.8618 15 6 1.2171 -4.6847 -0.9470 16 6 0.0273 -4.8514 -0.2644 17 6 -0.4846 -3.8151 0.5153 18 6 -1.7632 -3.9972 1.2467 19 7 -2.5168 -5.1049 1.2382 20 6 -3.5728 -4.9272 1.9873 21 7 -3.5214 -3.6853 2.5017 22 1 -4.1704 -3.2756 3.0948 23 7 -2.3411 -3.1001 2.0151 24 6 0.2044 -2.6105 0.6068 25 1 -0.3634 -0.0911 1.0236 26 1 -0.3633 0.9321 -0.4329 27 1 -0.3633 -0.8409 -0.5907 28 1 -0.0343 3.1014 1.3994 29 1 2.8362 -3.3679 -1.3981 30 1 1.6085 -5.4907 -1.5501 31 1 -0.5081 -5.7866 -0.3357 32 1 -4.3525 -5.6532 2.1637 33 1 -0.1889 -1.8052 1.2093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371330705.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:56 Heat of formation + Delta-G solvation = 97.762034 kcal Electronic energy + Delta-G solvation = -19988.025093 eV Core-core repulsion = 16823.447307 eV Total energy + Delta-G solvation = -3164.577786 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.05898 -39.36920 -37.44623 -34.73485 -33.06097 -32.02344 -31.70878 -30.41600 -29.68888 -26.33320 -24.96274 -23.72818 -22.98690 -21.87849 -20.74294 -19.07306 -18.23727 -17.00393 -16.31055 -15.89564 -15.47979 -15.36200 -14.95233 -14.35766 -14.11543 -13.89041 -13.63469 -13.06501 -12.66134 -12.37222 -12.16396 -11.70389 -11.65053 -11.32382 -11.14901 -10.92771 -10.59088 -10.44759 -10.33752 -10.27773 -10.09613 -9.98669 -9.01771 -8.58652 -8.35773 -8.22029 -7.73010 -6.38655 -3.85976 1.06179 1.57666 1.83340 2.58808 2.98820 3.16878 3.24557 3.30670 3.83402 3.96651 4.10946 4.39835 4.58604 4.80983 4.89573 5.13909 5.29508 5.42447 5.57951 5.78427 5.85117 5.98929 6.17993 6.26432 6.34122 6.43045 6.68244 6.75675 6.84162 6.91085 6.96435 7.17606 7.25018 7.53329 7.99524 8.09614 8.45916 9.15215 9.38100 9.96986 10.65764 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.005403 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.362743 B = 5181.389227 C = 6368.544405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.429 5.429 3 C -0.305 4.305 4 H 0.103 0.897 5 C 0.031 3.969 6 N -0.871 5.871 7 Si 0.927 3.073 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.267 1.267 11 C 0.473 3.527 12 O -0.588 6.588 13 C -0.097 4.097 14 C -0.062 4.062 15 C -0.135 4.135 16 C -0.074 4.074 17 C -0.034 4.034 18 C 0.277 3.723 19 N -0.537 5.537 20 C 0.258 3.742 21 N -0.486 5.486 22 H 0.442 0.558 23 N -0.297 5.297 24 C -0.064 4.064 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.033 0.967 28 H 0.269 0.731 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.222 0.778 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 -12.492 0.248 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.145 5.145 3 C -0.433 4.433 4 H 0.121 0.879 5 C -0.173 4.173 6 N -0.510 5.510 7 Si 0.754 3.246 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.191 1.191 11 C 0.262 3.738 12 O -0.474 6.474 13 C -0.101 4.101 14 C -0.082 4.082 15 C -0.153 4.153 16 C -0.095 4.095 17 C -0.037 4.037 18 C -0.002 4.002 19 N -0.265 5.265 20 C -0.042 4.042 21 N -0.204 5.204 22 H 0.287 0.713 23 N -0.125 5.125 24 C -0.085 4.085 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.238 0.762 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.213 -11.901 0.324 15.686 hybrid contribution -0.735 0.949 0.490 1.297 sum -10.949 -10.952 0.814 15.507 Atomic orbital electron populations 1.21816 0.81098 1.00540 1.00450 1.43532 1.05655 1.04746 1.60598 1.19748 0.98624 0.83129 1.41827 0.87896 1.25370 0.96604 1.00184 0.95188 1.70033 1.18836 1.29345 1.32747 0.85888 0.79704 0.80971 0.78069 1.20315 1.20897 1.19141 1.17882 0.87359 0.82954 0.85607 1.90608 1.13436 1.86677 1.56676 1.20226 0.94895 0.96345 0.98598 1.21362 0.98981 0.91839 0.96045 1.20962 0.95535 0.97661 1.01157 1.21165 0.95379 0.98026 0.94912 1.17314 0.90825 0.95454 1.00104 1.22392 0.95487 0.87176 0.95193 1.70493 1.05294 1.27098 1.23593 1.26042 0.97781 0.87925 0.92414 1.48152 1.19930 1.12443 1.39916 0.71257 1.78410 0.96319 1.20587 1.17222 1.21836 0.93096 0.96351 0.97169 0.92598 0.90442 0.94839 0.92046 0.85189 0.85437 0.85064 0.76151 0.83729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.46 7.20 59.85 0.43 2.89 16 2 N -0.43 -11.46 3.01 -123.31 -0.37 -11.83 16 3 C -0.31 -8.66 9.28 -15.00 -0.14 -8.80 16 4 H 0.10 3.03 7.43 -52.48 -0.39 2.64 16 5 C 0.03 0.82 4.96 -17.45 -0.09 0.73 16 6 N -0.87 -23.41 10.84 55.50 0.60 -22.81 16 7 Si 0.93 20.73 29.59 -169.99 -5.03 15.70 16 8 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 C 0.47 12.32 7.30 -12.37 -0.09 12.23 16 12 O -0.59 -17.13 16.61 5.29 0.09 -17.04 16 13 C -0.10 -2.06 5.20 -105.01 -0.55 -2.60 16 14 C -0.06 -1.12 9.63 -39.12 -0.38 -1.49 16 15 C -0.14 -1.97 10.02 -39.69 -0.40 -2.37 16 16 C -0.07 -1.11 9.68 -39.16 -0.38 -1.49 16 17 C -0.03 -0.59 5.87 -104.95 -0.62 -1.20 16 18 C 0.28 4.49 7.77 -156.62 -1.22 3.27 16 19 N -0.54 -7.32 10.81 -12.38 -0.13 -7.45 16 20 C 0.26 2.36 13.11 -90.70 -1.19 1.17 16 21 N -0.49 -4.96 7.44 29.52 0.22 -4.74 16 22 H 0.44 2.71 8.96 -182.34 -1.63 1.08 16 23 N -0.30 -4.69 12.42 32.11 0.40 -4.30 16 24 C -0.06 -1.25 7.23 -38.82 -0.28 -1.53 16 25 H 0.06 1.35 6.60 -51.93 -0.34 1.00 16 26 H 0.08 1.90 6.55 -51.93 -0.34 1.56 16 27 H 0.03 0.70 5.95 -51.93 -0.31 0.39 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.13 2.26 8.05 -52.49 -0.42 1.84 16 30 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.13 1.71 7.82 -52.49 -0.41 1.30 16 32 H 0.22 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.15 3.01 5.11 -52.49 -0.27 2.75 16 LS Contribution 290.20 15.07 4.37 4.37 Total: -1.00 -35.23 290.20 -8.84 -44.07 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.10 Total: 3.23 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -4.89 Total: 0.80 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.71 Total: -51.13 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.09 Total: -17.04 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.23 -8.84 -44.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371330705.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.832 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds