Wall clock time and date at job start Mon Mar 30 2020 01:34:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36872 * 119.99816 * 2 1 4 4 H 1.08010 * 119.99745 * 200.07598 * 3 2 1 5 5 C 1.39040 * 120.00662 * 20.07238 * 3 2 1 6 6 N 1.31373 * 119.99670 * 17.22421 * 5 3 2 7 7 Si 1.86797 * 120.00423 * 197.22425 * 5 3 2 8 8 H 1.48494 * 109.47153 * 94.98309 * 7 5 3 9 9 H 1.48500 * 109.47178 * 214.98181 * 7 5 3 10 10 H 1.48498 * 109.47157 * 334.98202 * 7 5 3 11 11 C 1.34776 * 119.99929 * 179.97438 * 2 1 3 12 12 O 1.21591 * 119.99810 * 183.92860 * 11 2 1 13 13 C 1.47747 * 120.00133 * 3.93628 * 11 2 1 14 14 C 1.39727 * 120.09375 * 140.57822 * 13 11 2 15 15 C 1.37992 * 120.08847 * 180.23338 * 14 13 11 16 16 C 1.38180 * 120.27987 * 359.79150 * 15 14 13 17 17 C 1.39425 * 120.18370 * 0.02562 * 16 15 14 18 18 C 1.48422 * 120.04599 * 179.97438 * 17 16 15 19 19 N 1.33977 * 125.65283 * 359.97438 * 18 17 16 20 20 C 1.30681 * 109.78157 * 179.97438 * 19 18 17 21 21 N 1.34515 * 108.29270 * 359.97438 * 20 19 18 22 22 H 0.97003 * 126.74234 * 180.02562 * 21 20 19 23 23 N 1.31498 * 125.65113 * 179.66668 * 18 17 16 24 24 C 1.39076 * 119.91013 * 359.97438 * 17 16 15 25 25 H 1.09002 * 109.47636 * 264.91351 * 1 2 3 26 26 H 1.09007 * 109.46767 * 24.91116 * 1 2 3 27 27 H 1.09001 * 109.47110 * 144.91174 * 1 2 3 28 28 H 0.96991 * 119.99902 * 180.02562 * 6 5 3 29 29 H 1.07994 * 119.95525 * 359.97438 * 14 13 11 30 30 H 1.07998 * 119.86375 * 179.77208 * 15 14 13 31 31 H 1.08001 * 119.91286 * 179.97438 * 16 15 14 32 32 H 1.07995 * 125.84933 * 180.02562 * 20 19 18 33 33 H 1.07993 * 120.14132 * 179.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1854 0.0000 4 1 3.1802 1.2138 -0.3211 5 6 1.5176 2.3530 0.4132 6 7 0.4067 2.2869 1.1114 7 14 2.2483 4.0155 -0.0242 8 1 1.6078 4.5273 -1.2624 9 1 2.0084 4.9698 1.0880 10 1 3.7095 3.8711 -0.2461 11 6 2.1389 -1.1672 0.0005 12 8 3.3526 -1.1684 0.0727 13 6 1.4028 -2.4453 -0.0867 14 6 1.9072 -3.4928 -0.8618 15 6 1.2171 -4.6847 -0.9470 16 6 0.0273 -4.8514 -0.2644 17 6 -0.4846 -3.8151 0.5153 18 6 -1.7632 -3.9972 1.2467 19 7 -2.5168 -5.1049 1.2382 20 6 -3.5728 -4.9272 1.9873 21 7 -3.5214 -3.6853 2.5017 22 1 -4.1704 -3.2756 3.0948 23 7 -2.3411 -3.1001 2.0151 24 6 0.2044 -2.6105 0.6068 25 1 -0.3634 -0.0911 1.0236 26 1 -0.3633 0.9321 -0.4329 27 1 -0.3633 -0.8409 -0.5907 28 1 -0.0343 3.1014 1.3994 29 1 2.8362 -3.3679 -1.3981 30 1 1.6085 -5.4907 -1.5501 31 1 -0.5081 -5.7866 -0.3357 32 1 -4.3525 -5.6532 2.1637 33 1 -0.1889 -1.8052 1.2093 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371330705.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:56 Heat of formation + Delta-G solvation = 74.184720 kcal Electronic energy + Delta-G solvation = -19989.047482 eV Core-core repulsion = 16823.447307 eV Total energy + Delta-G solvation = -3165.600175 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.00731 -41.06294 -39.11877 -36.81015 -34.15407 -33.91647 -32.82656 -31.96538 -30.87482 -28.30772 -26.89909 -24.91759 -24.41851 -22.99781 -22.13186 -20.49590 -19.31371 -19.01350 -17.99354 -17.42442 -16.83491 -16.55039 -16.44311 -15.95875 -15.87695 -15.31958 -15.10136 -14.52810 -14.41601 -13.86862 -13.62026 -13.43136 -13.22528 -13.10898 -12.66519 -12.55111 -12.41791 -12.18506 -12.08295 -11.45478 -11.11742 -11.04098 -10.99331 -10.53514 -9.83643 -9.83236 -9.53631 -8.43831 -6.02761 -0.19234 0.15978 0.89744 1.36638 1.39423 1.53528 1.80247 1.83684 2.14621 2.23977 2.86872 2.94103 2.99763 3.15189 3.61622 3.89256 3.98173 4.12106 4.25333 4.39067 4.50381 4.56649 4.75419 4.86239 4.94962 5.15517 5.18690 5.23556 5.37970 5.43295 5.46381 5.50897 5.90062 6.01554 6.29204 6.39060 7.05274 7.06167 7.33350 7.92076 8.60155 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.005403 C = 0.004396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.362743 B = 5181.389227 C = 6368.544405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.445 5.445 3 C -0.351 4.351 4 H 0.078 0.922 5 C -0.001 4.001 6 N -0.890 5.890 7 Si 0.997 3.003 8 H -0.262 1.262 9 H -0.272 1.272 10 H -0.272 1.272 11 C 0.464 3.536 12 O -0.633 6.633 13 C -0.126 4.126 14 C -0.069 4.069 15 C -0.111 4.111 16 C -0.056 4.056 17 C -0.036 4.036 18 C 0.257 3.743 19 N -0.561 5.561 20 C 0.282 3.718 21 N -0.475 5.475 22 H 0.459 0.541 23 N -0.343 5.343 24 C -0.073 4.073 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.277 0.723 29 H 0.129 0.871 30 H 0.175 0.825 31 H 0.162 0.838 32 H 0.283 0.717 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.228 -14.608 -0.069 19.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.160 5.160 3 C -0.478 4.478 4 H 0.096 0.904 5 C -0.204 4.204 6 N -0.527 5.527 7 Si 0.819 3.181 8 H -0.187 1.187 9 H -0.197 1.197 10 H -0.197 1.197 11 C 0.255 3.745 12 O -0.522 6.522 13 C -0.129 4.129 14 C -0.089 4.089 15 C -0.129 4.129 16 C -0.077 4.077 17 C -0.039 4.039 18 C -0.022 4.022 19 N -0.290 5.290 20 C -0.016 4.016 21 N -0.195 5.195 22 H 0.308 0.692 23 N -0.173 5.173 24 C -0.094 4.094 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.147 0.853 30 H 0.193 0.807 31 H 0.179 0.821 32 H 0.299 0.701 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.493 -14.020 0.029 18.779 hybrid contribution -0.202 1.439 0.679 1.604 sum -12.694 -12.581 0.708 17.887 Atomic orbital electron populations 1.21630 0.79571 1.00552 0.99962 1.43763 1.06681 1.04783 1.60809 1.19743 0.98469 0.84910 1.44694 0.90401 1.26223 0.96875 1.03197 0.94105 1.70101 1.19472 1.30734 1.32399 0.84877 0.78525 0.76163 0.78514 1.18667 1.19659 1.19702 1.18721 0.87240 0.84485 0.84053 1.90539 1.15486 1.87751 1.58441 1.19898 0.96085 0.95004 1.01942 1.21490 0.99361 0.92290 0.95779 1.21384 0.94417 0.97029 1.00054 1.21554 0.95056 0.98175 0.92871 1.17495 0.91327 0.94838 1.00202 1.22260 0.95687 0.88400 0.95892 1.70455 1.06557 1.26458 1.25510 1.27183 0.97190 0.87761 0.89432 1.48073 1.18750 1.12860 1.39779 0.69201 1.78304 0.98602 1.22273 1.18159 1.21540 0.93034 0.97274 0.97544 0.93741 0.91836 0.92628 0.91285 0.85260 0.80723 0.82068 0.70149 0.85982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.24 7.20 127.77 0.92 7.16 16 2 N -0.44 -25.18 3.01 -662.29 -2.00 -27.17 16 3 C -0.35 -21.02 9.28 84.10 0.78 -20.24 16 4 H 0.08 4.93 7.43 -2.91 -0.02 4.91 16 5 C 0.00 -0.07 4.96 84.95 0.42 0.35 16 6 N -0.89 -48.95 10.84 21.68 0.23 -48.72 16 7 Si 1.00 43.28 29.59 68.60 2.03 45.31 16 8 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 9 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 C 0.46 25.68 7.30 86.76 0.63 26.31 16 12 O -0.63 -39.32 16.61 -4.00 -0.07 -39.38 16 13 C -0.13 -5.53 5.20 -20.12 -0.10 -5.64 16 14 C -0.07 -2.46 9.63 22.57 0.22 -2.24 16 15 C -0.11 -2.89 10.02 22.20 0.22 -2.67 16 16 C -0.06 -1.52 9.68 22.54 0.22 -1.30 16 17 C -0.04 -1.20 5.87 -20.08 -0.12 -1.32 16 18 C 0.26 8.00 7.77 137.47 1.07 9.07 16 19 N -0.56 -13.55 10.81 -193.08 -2.09 -15.64 16 20 C 0.28 4.01 13.11 180.38 2.37 6.38 16 21 N -0.47 -8.51 7.44 -60.53 -0.45 -8.96 16 22 H 0.46 4.46 8.96 -213.10 -1.91 2.55 16 23 N -0.34 -10.65 12.42 -52.34 -0.65 -11.30 16 24 C -0.07 -2.94 7.23 22.76 0.16 -2.77 16 25 H 0.04 2.27 6.60 -2.39 -0.02 2.26 16 26 H 0.06 3.25 6.55 -2.38 -0.02 3.24 16 27 H 0.06 2.45 5.95 -2.39 -0.01 2.44 16 28 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.13 4.53 8.05 -2.91 -0.02 4.51 16 30 H 0.18 2.95 8.06 -2.91 -0.02 2.92 16 31 H 0.16 3.45 7.82 -2.91 -0.02 3.43 16 32 H 0.28 0.05 8.06 -2.91 -0.02 0.03 16 33 H 0.12 5.41 5.11 -2.91 -0.01 5.40 16 Total: -1.00 -82.62 290.20 3.07 -79.55 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -0.73 Total: 13.22 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 6.79 Total: 13.10 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -4.95 Total: -111.79 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.07 Total: -39.38 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -82.62 3.07 -79.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371330705.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.733 kcal (2) G-P(sol) polarization free energy of solvation -82.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds