Wall clock time and date at job start Mon Mar 30 2020 01:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36071 * 127.09790 * 2 1 4 4 N 1.30621 * 107.44133 * 179.97438 * 3 2 1 5 5 N 1.28544 * 110.05728 * 359.97438 * 4 3 2 6 6 C 1.31449 * 109.71711 * 0.02562 * 5 4 3 7 7 C 1.47938 * 126.50834 * 180.02562 * 6 5 4 8 8 C 1.39647 * 120.09908 * 200.34753 * 7 6 5 9 9 C 1.38042 * 120.02476 * 179.97438 * 8 7 6 10 10 C 1.38192 * 120.22886 * 359.97438 * 9 8 7 11 11 C 1.39124 * 120.19546 * 359.97438 * 10 9 8 12 12 N 1.39544 * 120.01275 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99633 * 215.28349 * 12 11 10 14 14 O 1.21748 * 120.00407 * 356.07122 * 13 12 11 15 15 C 1.46155 * 119.99733 * 176.07683 * 13 12 11 16 16 H 1.08000 * 120.00010 * 359.97438 * 15 13 12 17 17 C 1.40128 * 119.99864 * 180.02562 * 15 13 12 18 18 N 1.30637 * 119.99968 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99750 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46966 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47187 * 119.99861 * 19 17 15 22 22 H 1.48494 * 109.47156 * 239.99785 * 19 17 15 23 23 C 1.38790 * 119.97311 * 359.78296 * 11 10 9 24 24 H 1.09003 * 109.46791 * 86.72261 * 1 2 3 25 25 H 1.09002 * 109.47447 * 206.71772 * 1 2 3 26 26 H 1.09000 * 109.47443 * 326.72258 * 1 2 3 27 27 H 1.07994 * 126.28251 * 359.73051 * 3 2 1 28 28 H 1.07993 * 119.98521 * 0.02562 * 8 7 6 29 29 H 1.08008 * 119.88330 * 180.02562 * 9 8 7 30 30 H 1.08005 * 119.90368 * 179.97438 * 10 9 8 31 31 H 0.96996 * 119.99813 * 35.28647 * 12 11 10 32 32 H 0.96996 * 119.99916 * 180.02562 * 18 17 15 33 33 H 1.07998 * 120.11365 * 180.24969 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2858 1.0853 0.0000 4 7 3.5159 0.6459 0.0006 5 7 3.5249 -0.6395 0.0014 6 6 2.2906 -1.0916 0.0010 7 6 1.8731 -2.5109 0.0022 8 6 0.5891 -2.8635 -0.4186 9 6 0.2013 -4.1884 -0.4173 10 6 1.0803 -5.1702 -0.0010 11 6 2.3621 -4.8294 0.4191 12 7 3.2467 -5.8239 0.8381 13 6 4.1139 -5.5760 1.8395 14 8 4.1752 -4.4635 2.3304 15 6 4.9809 -6.6426 2.3363 16 1 4.9263 -7.6296 1.9011 17 6 5.8822 -6.3850 3.3778 18 7 5.9478 -5.1913 3.9045 19 14 6.9898 -7.7484 4.0131 20 1 6.7231 -8.9968 3.2542 21 1 8.4107 -7.3554 3.8349 22 1 6.7165 -7.9769 5.4547 23 6 2.7623 -3.5005 0.4163 24 1 -0.3633 0.0588 -1.0260 25 1 -0.3634 -0.9179 0.4620 26 1 -0.3634 0.8591 0.5639 27 1 1.9769 2.1201 -0.0041 28 1 -0.1005 -2.0996 -0.7458 29 1 -0.7922 -4.4586 -0.7436 30 1 0.7713 -6.2050 -0.0017 31 1 3.2375 -6.6936 0.4086 32 1 6.5720 -5.0129 4.6253 33 1 3.7581 -3.2338 0.7381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372021343.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:33 Heat of formation + Delta-G solvation = 75.876431 kcal Electronic energy + Delta-G solvation = -19851.569597 eV Core-core repulsion = 16686.042780 eV Total energy + Delta-G solvation = -3165.526817 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.72898 -39.24460 -37.04990 -35.00024 -33.56780 -32.52423 -31.79037 -29.36486 -28.74116 -27.72907 -26.22753 -23.36344 -22.66813 -21.67134 -20.62157 -19.71967 -17.65424 -17.14168 -16.25736 -16.17961 -15.81639 -15.47967 -15.01900 -14.42324 -13.97971 -13.92864 -13.50786 -13.40704 -12.97412 -12.75396 -12.39170 -12.06796 -11.38041 -11.34744 -11.15350 -11.08219 -11.01771 -10.62774 -10.29903 -10.16198 -10.08578 -9.79112 -9.25023 -8.88539 -8.12695 -7.71054 -7.22831 -6.32669 -4.80882 1.16075 1.88097 2.26198 2.51361 3.07994 3.16220 3.18931 3.20790 3.99609 4.17433 4.37603 4.46197 4.50523 4.60567 4.65858 4.85435 5.07898 5.15991 5.35609 5.48492 5.60196 5.63311 5.79064 6.01608 6.09734 6.21205 6.45065 6.66605 6.86293 6.89979 7.03836 7.25643 7.32144 7.70603 8.01061 8.14755 8.86517 8.93404 9.19533 10.38880 10.58060 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023625 B = 0.004871 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.879891 B = 5747.454806 C = 6722.631955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.482 5.482 3 C 0.141 3.859 4 N -0.296 5.296 5 N -0.274 5.274 6 C 0.236 3.764 7 C -0.011 4.011 8 C -0.161 4.161 9 C -0.099 4.099 10 C -0.161 4.161 11 C 0.193 3.807 12 N -0.699 5.699 13 C 0.540 3.460 14 O -0.555 6.555 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.086 3.914 18 N -0.756 5.756 19 Si 0.913 3.087 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.275 1.275 23 C -0.081 4.081 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.218 0.782 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.395 0.605 32 H 0.272 0.728 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.812 5.280 -8.087 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.174 5.174 3 C -0.146 4.146 4 N -0.135 5.135 5 N -0.113 5.113 6 C -0.028 4.028 7 C -0.015 4.015 8 C -0.183 4.183 9 C -0.118 4.118 10 C -0.183 4.183 11 C 0.094 3.906 12 N -0.342 5.342 13 C 0.346 3.654 14 O -0.436 6.436 15 C -0.573 4.573 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.384 5.384 19 Si 0.737 3.263 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.103 4.103 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.234 0.766 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.229 0.771 32 H 0.083 0.917 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -12.068 6.227 -7.507 15.516 hybrid contribution -1.066 -0.912 0.181 1.414 sum -13.133 5.315 -7.325 15.950 Atomic orbital electron populations 1.22328 0.75778 1.05656 1.03856 1.46509 1.08838 1.06579 1.55458 1.26487 0.87312 0.94527 1.06224 1.74222 1.17977 1.03748 1.17565 1.74690 1.16348 1.02330 1.17981 1.23123 0.86660 0.89577 1.03481 1.17319 0.94712 0.86196 1.03236 1.21027 0.95217 0.96746 1.05265 1.20605 0.98934 0.92040 1.00190 1.21087 0.92252 0.99804 1.05172 1.17872 0.89451 0.89746 0.93555 1.44194 1.37887 1.13891 1.38229 1.18459 0.79371 0.89818 0.77706 1.90663 1.69341 1.24355 1.59246 1.20858 1.20538 0.96562 1.19350 0.90893 1.25751 0.96510 0.95961 0.95330 1.69996 1.29346 1.20366 1.18676 0.86226 0.79824 0.81280 0.78971 1.18637 1.19944 1.20039 1.21573 1.01321 0.90599 0.96844 0.89987 0.88105 0.89222 0.76580 0.86478 0.86056 0.86002 0.77115 0.91704 0.82513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 9.62 59.85 0.58 1.09 16 2 N -0.48 -6.52 3.20 -122.92 -0.39 -6.91 16 3 C 0.14 1.91 12.77 -89.33 -1.14 0.77 16 4 N -0.30 -5.60 12.19 29.82 0.36 -5.24 16 5 N -0.27 -5.91 12.05 32.51 0.39 -5.52 16 6 C 0.24 4.35 7.67 -154.24 -1.18 3.16 16 7 C -0.01 -0.21 5.85 -104.99 -0.61 -0.82 16 8 C -0.16 -2.29 8.59 -39.13 -0.34 -2.62 16 9 C -0.10 -1.34 10.02 -39.67 -0.40 -1.73 16 10 C -0.16 -2.56 9.96 -39.27 -0.39 -2.95 16 11 C 0.19 3.95 6.28 -83.82 -0.53 3.42 16 12 N -0.70 -15.43 5.31 -11.23 -0.06 -15.49 16 13 C 0.54 14.96 7.57 -13.09 -0.10 14.87 16 14 O -0.55 -17.49 12.49 5.15 0.06 -17.43 16 15 C -0.54 -14.66 9.53 -35.70 -0.34 -15.00 16 16 H 0.07 1.80 7.85 -52.49 -0.41 1.38 16 17 C 0.09 2.34 5.50 -17.35 -0.10 2.24 16 18 N -0.76 -22.32 11.82 55.55 0.66 -21.66 16 19 Si 0.91 19.65 29.56 -169.99 -5.02 14.63 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 23 C -0.08 -1.78 8.33 -38.97 -0.32 -2.10 16 24 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 25 H 0.10 0.81 5.89 -51.93 -0.31 0.51 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.22 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.12 1.23 5.16 -52.49 -0.27 0.96 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 30 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.40 7.33 8.80 -40.82 -0.36 6.97 16 32 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 33 H 0.16 4.17 6.20 -52.49 -0.33 3.85 16 LS Contribution 292.26 15.07 4.40 4.40 Total: -1.00 -37.43 292.26 -7.39 -44.82 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -2.92 Total: 8.07 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -4.87 Total: 0.32 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.96 Total: -54.82 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.06 Total: -17.43 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -37.43 -7.39 -44.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372021343.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.699 kcal (2) G-P(sol) polarization free energy of solvation -37.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds