Wall clock time and date at job start Mon Mar 30 2020 01:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36071 * 127.09790 * 2 1 4 4 N 1.30621 * 107.44133 * 179.97438 * 3 2 1 5 5 N 1.28544 * 110.05728 * 359.97438 * 4 3 2 6 6 C 1.31449 * 109.71711 * 0.02562 * 5 4 3 7 7 C 1.47938 * 126.50834 * 180.02562 * 6 5 4 8 8 C 1.39647 * 120.09908 * 200.34753 * 7 6 5 9 9 C 1.38042 * 120.02476 * 179.97438 * 8 7 6 10 10 C 1.38192 * 120.22886 * 359.97438 * 9 8 7 11 11 C 1.39124 * 120.19546 * 359.97438 * 10 9 8 12 12 N 1.39544 * 120.01275 * 180.02562 * 11 10 9 13 13 C 1.34773 * 119.99633 * 215.28349 * 12 11 10 14 14 O 1.21748 * 120.00407 * 356.07122 * 13 12 11 15 15 C 1.46155 * 119.99733 * 176.07683 * 13 12 11 16 16 H 1.08000 * 120.00010 * 359.97438 * 15 13 12 17 17 C 1.40128 * 119.99864 * 180.02562 * 15 13 12 18 18 N 1.30637 * 119.99968 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 119.99750 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46966 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47187 * 119.99861 * 19 17 15 22 22 H 1.48494 * 109.47156 * 239.99785 * 19 17 15 23 23 C 1.38790 * 119.97311 * 359.78296 * 11 10 9 24 24 H 1.09003 * 109.46791 * 86.72261 * 1 2 3 25 25 H 1.09002 * 109.47447 * 206.71772 * 1 2 3 26 26 H 1.09000 * 109.47443 * 326.72258 * 1 2 3 27 27 H 1.07994 * 126.28251 * 359.73051 * 3 2 1 28 28 H 1.07993 * 119.98521 * 0.02562 * 8 7 6 29 29 H 1.08008 * 119.88330 * 180.02562 * 9 8 7 30 30 H 1.08005 * 119.90368 * 179.97438 * 10 9 8 31 31 H 0.96996 * 119.99813 * 35.28647 * 12 11 10 32 32 H 0.96996 * 119.99916 * 180.02562 * 18 17 15 33 33 H 1.07998 * 120.11365 * 180.24969 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2858 1.0853 0.0000 4 7 3.5159 0.6459 0.0006 5 7 3.5249 -0.6395 0.0014 6 6 2.2906 -1.0916 0.0010 7 6 1.8731 -2.5109 0.0022 8 6 0.5891 -2.8635 -0.4186 9 6 0.2013 -4.1884 -0.4173 10 6 1.0803 -5.1702 -0.0010 11 6 2.3621 -4.8294 0.4191 12 7 3.2467 -5.8239 0.8381 13 6 4.1139 -5.5760 1.8395 14 8 4.1752 -4.4635 2.3304 15 6 4.9809 -6.6426 2.3363 16 1 4.9263 -7.6296 1.9011 17 6 5.8822 -6.3850 3.3778 18 7 5.9478 -5.1913 3.9045 19 14 6.9898 -7.7484 4.0131 20 1 6.7231 -8.9968 3.2542 21 1 8.4107 -7.3554 3.8349 22 1 6.7165 -7.9769 5.4547 23 6 2.7623 -3.5005 0.4163 24 1 -0.3633 0.0588 -1.0260 25 1 -0.3634 -0.9179 0.4620 26 1 -0.3634 0.8591 0.5639 27 1 1.9769 2.1201 -0.0041 28 1 -0.1005 -2.0996 -0.7458 29 1 -0.7922 -4.4586 -0.7436 30 1 0.7713 -6.2050 -0.0017 31 1 3.2375 -6.6936 0.4086 32 1 6.5720 -5.0129 4.6253 33 1 3.7581 -3.2338 0.7381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372021343.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:33 Heat of formation + Delta-G solvation = 48.489473 kcal Electronic energy + Delta-G solvation = -19852.757185 eV Core-core repulsion = 16686.042780 eV Total energy + Delta-G solvation = -3166.714405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.94582 -40.80768 -38.80781 -36.15515 -35.29596 -34.56619 -33.14050 -30.88358 -30.11949 -28.60320 -28.16998 -24.72593 -24.02124 -23.03903 -21.95430 -21.39807 -19.45681 -18.48703 -17.62176 -17.45832 -17.28979 -17.04012 -16.30474 -15.97429 -15.62182 -15.29568 -14.82543 -14.50532 -14.30579 -14.15665 -13.84587 -13.54879 -13.19440 -12.84661 -12.77431 -12.64180 -12.42671 -12.25030 -11.99719 -11.42537 -11.26691 -11.11413 -10.98961 -10.61335 -9.91096 -9.41697 -8.84211 -8.37225 -6.95987 -0.12941 0.52300 1.09059 1.38025 1.39088 1.51291 1.57535 1.88032 2.20033 2.37883 2.86619 2.96188 3.21993 3.56362 3.68871 3.83813 4.01951 4.16610 4.29930 4.34706 4.40513 4.60212 4.68144 4.79303 4.82179 4.99112 5.10757 5.24246 5.41682 5.49724 5.56354 5.78218 5.84359 5.98081 6.15946 6.36509 6.76845 7.33949 7.68220 8.35750 8.56830 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.023625 B = 0.004871 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.879891 B = 5747.454806 C = 6722.631955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.471 5.471 3 C 0.171 3.829 4 N -0.356 5.356 5 N -0.342 5.342 6 C 0.214 3.786 7 C -0.023 4.023 8 C -0.136 4.136 9 C -0.081 4.081 10 C -0.146 4.146 11 C 0.154 3.846 12 N -0.693 5.693 13 C 0.525 3.475 14 O -0.607 6.607 15 C -0.564 4.564 16 H 0.097 0.903 17 C 0.026 3.974 18 N -0.818 5.818 19 Si 1.004 2.996 20 H -0.241 1.241 21 H -0.271 1.271 22 H -0.267 1.267 23 C -0.123 4.123 24 H 0.115 0.885 25 H 0.100 0.900 26 H 0.125 0.875 27 H 0.277 0.723 28 H 0.166 0.834 29 H 0.181 0.819 30 H 0.154 0.846 31 H 0.410 0.590 32 H 0.276 0.724 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.915 4.708 -9.444 20.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.162 5.162 3 C -0.116 4.116 4 N -0.195 5.195 5 N -0.182 5.182 6 C -0.052 4.052 7 C -0.026 4.026 8 C -0.156 4.156 9 C -0.099 4.099 10 C -0.167 4.167 11 C 0.056 3.944 12 N -0.338 5.338 13 C 0.332 3.668 14 O -0.492 6.492 15 C -0.600 4.600 16 H 0.115 0.885 17 C -0.189 4.189 18 N -0.447 5.447 19 Si 0.823 3.177 20 H -0.164 1.164 21 H -0.196 1.196 22 H -0.192 1.192 23 C -0.146 4.146 24 H 0.133 0.867 25 H 0.118 0.882 26 H 0.143 0.857 27 H 0.292 0.708 28 H 0.183 0.817 29 H 0.198 0.802 30 H 0.171 0.829 31 H 0.246 0.754 32 H 0.086 0.914 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.247 5.642 -8.924 19.376 hybrid contribution -0.021 -0.552 0.487 0.736 sum -16.268 5.089 -8.438 19.019 Atomic orbital electron populations 1.22865 0.71916 1.07356 1.06665 1.46792 1.10845 1.04734 1.53838 1.27556 0.85840 0.96478 1.01770 1.74070 1.21515 1.03040 1.20828 1.74557 1.19349 1.04027 1.20303 1.23152 0.86966 0.90827 1.04255 1.17506 0.95989 0.85558 1.03562 1.21590 0.93400 0.98634 1.01967 1.21286 1.00535 0.90757 0.97335 1.21464 0.90105 1.02272 1.02879 1.18164 0.91312 0.88608 0.96278 1.43645 1.37670 1.15054 1.37392 1.18838 0.80159 0.89281 0.78559 1.90634 1.71064 1.26192 1.61337 1.21446 1.21016 0.97479 1.20045 0.88534 1.27089 0.97955 0.98822 0.95064 1.70191 1.30968 1.23649 1.19858 0.84881 0.76749 0.77660 0.78456 1.16376 1.19605 1.19180 1.21173 0.99895 0.92970 1.00565 0.86696 0.88174 0.85655 0.70772 0.81660 0.80187 0.82866 0.75373 0.91388 0.89031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.54 9.62 127.77 1.23 1.77 16 2 N -0.47 -11.76 3.20 -542.81 -1.74 -13.49 16 3 C 0.17 4.34 12.77 179.90 2.30 6.64 16 4 N -0.36 -14.10 12.19 -59.58 -0.73 -14.82 16 5 N -0.34 -16.03 12.05 -51.06 -0.62 -16.64 16 6 C 0.21 8.16 7.67 136.42 1.05 9.21 16 7 C -0.02 -0.86 5.85 -20.10 -0.12 -0.98 16 8 C -0.14 -3.34 8.59 22.56 0.19 -3.15 16 9 C -0.08 -1.77 10.02 22.21 0.22 -1.55 16 10 C -0.15 -4.27 9.96 22.47 0.22 -4.05 16 11 C 0.15 6.52 6.28 38.26 0.24 6.76 16 12 N -0.69 -32.32 5.31 -307.65 -1.64 -33.95 16 13 C 0.53 31.27 7.57 86.30 0.65 31.93 16 14 O -0.61 -42.02 12.49 -4.50 -0.06 -42.08 16 15 C -0.56 -32.13 9.53 24.79 0.24 -31.90 16 16 H 0.10 4.82 7.85 -2.91 -0.02 4.79 16 17 C 0.03 1.50 5.50 85.33 0.47 1.97 16 18 N -0.82 -51.51 11.82 21.85 0.26 -51.25 16 19 Si 1.00 41.30 29.56 68.60 2.03 43.33 16 20 H -0.24 -8.98 7.11 99.48 0.71 -8.27 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 23 C -0.12 -5.89 8.33 22.67 0.19 -5.70 16 24 H 0.11 0.53 8.09 -2.39 -0.02 0.52 16 25 H 0.10 1.10 5.89 -2.39 -0.01 1.09 16 26 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.28 3.09 8.06 -2.91 -0.02 3.06 16 28 H 0.17 2.45 5.16 -2.91 -0.02 2.44 16 29 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 30 H 0.15 3.50 8.06 -2.91 -0.02 3.47 16 31 H 0.41 15.70 8.80 -92.71 -0.82 14.88 16 32 H 0.28 15.77 8.29 -92.71 -0.77 15.00 16 33 H 0.09 5.58 6.20 -2.91 -0.02 5.56 16 Total: -1.00 -97.70 292.26 4.76 -92.94 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: 0.36 Total: 25.01 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 6.88 Total: 10.96 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -4.46 Total: -130.16 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.06 Total: -42.08 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -97.70 4.76 -92.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372021343.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.432 kcal (2) G-P(sol) polarization free energy of solvation -97.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds