Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30490 * 125.72098 * 2 1 4 4 C 1.34154 * 109.36471 * 180.23541 * 3 2 1 5 5 C 1.34634 * 108.21282 * 359.75289 * 4 3 2 6 6 N 1.35918 * 125.72196 * 179.82175 * 2 1 3 7 7 C 1.39788 * 126.48502 * 0.03297 * 6 2 1 8 8 N 1.32221 * 119.74788 * 123.80228 * 7 6 2 9 9 C 1.31913 * 121.73472 * 180.02562 * 8 7 6 10 10 C 1.38278 * 121.02937 * 0.02562 * 9 8 7 11 11 C 1.38575 * 119.38250 * 359.70121 * 10 9 8 12 12 C 1.39239 * 118.40896 * 0.53884 * 11 10 9 13 13 N 1.39481 * 120.52726 * 179.75888 * 12 11 10 14 14 C 1.34778 * 120.00258 * 341.25140 * 13 12 11 15 15 O 1.21759 * 119.99615 * 354.20015 * 14 13 12 16 16 C 1.41824 * 120.00094 * 174.21051 * 14 13 12 17 17 H 1.08004 * 119.99654 * 359.71826 * 16 14 13 18 18 C 1.40132 * 119.99851 * 179.97438 * 16 14 13 19 19 N 1.30635 * 120.00192 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99861 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46578 * 60.00500 * 20 18 16 22 22 H 1.48498 * 109.47066 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47446 * 300.00397 * 20 18 16 24 24 H 1.08998 * 109.47199 * 270.18014 * 1 2 3 25 25 H 1.08998 * 109.47111 * 30.17628 * 1 2 3 26 26 H 1.08998 * 109.47055 * 150.17792 * 1 2 3 27 27 H 1.07998 * 125.89132 * 179.76399 * 4 3 2 28 28 H 1.08002 * 126.58003 * 180.02562 * 5 4 3 29 29 H 1.07997 * 119.48249 * 180.02562 * 9 8 7 30 30 H 1.08004 * 120.30337 * 179.97438 * 10 9 8 31 31 H 1.08001 * 120.79462 * 180.29563 * 11 10 9 32 32 H 0.96998 * 119.99818 * 161.24838 * 13 12 11 33 33 H 0.96995 * 120.00026 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2689 1.0594 0.0000 4 6 3.5561 0.6816 -0.0052 5 6 3.5997 -0.6640 -0.0031 6 7 2.3006 -1.1035 0.0034 7 6 1.8734 -2.4345 0.0069 8 7 2.2815 -3.2569 -0.9445 9 6 1.9025 -4.5200 -0.9795 10 6 1.0567 -5.0373 -0.0155 11 6 0.6065 -4.2159 1.0056 12 6 1.0177 -2.8856 1.0158 13 7 0.5871 -2.0186 2.0200 14 6 -0.4986 -2.3268 2.7567 15 8 -1.1651 -3.3070 2.4780 16 6 -0.8649 -1.5094 3.8563 17 1 -0.2711 -0.6425 4.1060 18 6 -1.9940 -1.8296 4.6219 19 7 -2.7096 -2.8807 4.3225 20 14 -2.4760 -0.7533 6.0706 21 1 -2.7456 0.6269 5.5936 22 1 -3.6982 -1.3029 6.7105 23 1 -1.3680 -0.7280 7.0588 24 1 -0.3633 0.0032 1.0276 25 1 -0.3633 0.8884 -0.5166 26 1 -0.3633 -0.8916 -0.5111 27 1 4.4100 1.3428 -0.0101 28 1 4.4874 -1.2792 -0.0056 29 1 2.2583 -5.1599 -1.7733 30 1 0.7535 -6.0731 -0.0557 31 1 -0.0509 -4.5973 1.7730 32 1 1.0691 -1.1938 2.1882 33 1 -3.4909 -3.1026 4.8527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375368802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = 73.619156 kcal Electronic energy + Delta-G solvation = -20674.472415 eV Core-core repulsion = 17508.847715 eV Total energy + Delta-G solvation = -3165.624700 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.10118 -39.87811 -37.85642 -34.36842 -33.62371 -32.67179 -31.38035 -31.01893 -29.08358 -26.81468 -26.51590 -23.65985 -23.14324 -20.98034 -20.28826 -19.96937 -18.14860 -17.73925 -16.50297 -16.15095 -15.40214 -15.05498 -14.88887 -14.33362 -14.09277 -13.79382 -13.60362 -13.05105 -12.85619 -12.77670 -12.54024 -12.26885 -11.97932 -11.93645 -11.54361 -11.25305 -10.87617 -10.52100 -10.22271 -10.19929 -9.84931 -9.47530 -9.15678 -8.96654 -8.12156 -7.91539 -7.42384 -6.59519 -5.15137 1.18621 1.67607 2.30265 2.83911 2.96702 3.03056 3.04631 3.34013 3.79693 3.92370 4.17591 4.25044 4.71439 4.81067 4.99976 5.19286 5.37737 5.51474 5.55749 5.60976 5.65758 5.75227 5.90373 6.01596 6.24839 6.41139 6.44813 6.63656 6.87843 6.97948 7.04433 7.37325 7.49964 7.73103 7.82279 8.12898 8.29894 8.57875 8.89944 10.09082 10.28637 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.006904 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.651157 B = 4054.812074 C = 5236.157950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.223 3.777 3 N -0.487 5.487 4 C -0.034 4.034 5 C -0.038 4.038 6 N -0.394 5.394 7 C 0.233 3.767 8 N -0.460 5.460 9 C 0.056 3.944 10 C -0.138 4.138 11 C -0.103 4.103 12 C 0.178 3.822 13 N -0.680 5.680 14 C 0.538 3.462 15 O -0.561 6.561 16 C -0.530 4.530 17 H 0.073 0.927 18 C 0.089 3.911 19 N -0.741 5.741 20 Si 0.915 3.085 21 H -0.263 1.263 22 H -0.277 1.277 23 H -0.264 1.264 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.170 0.830 28 H 0.171 0.829 29 H 0.155 0.845 30 H 0.137 0.863 31 H 0.182 0.818 32 H 0.396 0.604 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.690 -0.117 -4.948 8.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.038 4.038 3 N -0.206 5.206 4 C -0.181 4.181 5 C -0.170 4.170 6 N -0.076 5.076 7 C 0.003 3.997 8 N -0.170 5.170 9 C -0.106 4.106 10 C -0.159 4.159 11 C -0.132 4.132 12 C 0.070 3.930 13 N -0.320 5.320 14 C 0.350 3.650 15 O -0.446 6.446 16 C -0.564 4.564 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.368 5.368 20 Si 0.739 3.261 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.189 1.189 24 H 0.111 0.889 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.188 0.812 28 H 0.188 0.812 29 H 0.172 0.828 30 H 0.155 0.845 31 H 0.199 0.801 32 H 0.231 0.769 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.224 0.173 -5.588 8.366 hybrid contribution 0.049 -0.272 1.258 1.288 sum 6.273 -0.099 -4.329 7.622 Atomic orbital electron populations 1.20321 0.84479 1.03433 1.04771 1.23702 0.95756 0.80252 1.04126 1.70264 1.02203 1.27540 1.20596 1.22216 0.94777 0.92499 1.08609 1.22727 0.86862 0.96412 1.10990 1.42603 1.06778 1.03845 1.54350 1.17650 1.03514 0.84487 0.94026 1.66833 1.23687 1.05008 1.21481 1.22224 0.98360 0.90228 0.99819 1.22193 0.97233 1.01186 0.95275 1.22498 0.99640 0.90399 1.00646 1.18791 0.94014 0.91642 0.88564 1.44489 1.31221 1.22652 1.33598 1.17127 0.78045 0.86903 0.82956 1.90531 1.52685 1.30176 1.71161 1.20051 1.11917 1.12485 1.11955 0.90895 1.25761 0.95015 0.94765 0.98027 1.69963 1.11842 1.20879 1.34104 0.86277 0.78616 0.80631 0.80614 1.18734 1.20140 1.18899 0.88852 0.89406 0.91162 0.81241 0.81199 0.82764 0.84547 0.80081 0.76912 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 8.91 36.01 0.32 -0.90 16 2 C 0.22 4.07 6.65 -154.62 -1.03 3.05 16 3 N -0.49 -8.85 11.24 -10.62 -0.12 -8.96 16 4 C -0.03 -0.54 11.85 -17.81 -0.21 -0.75 16 5 C -0.04 -0.61 11.52 -16.45 -0.19 -0.80 16 6 N -0.39 -7.11 2.57 -59.35 -0.15 -7.26 16 7 C 0.23 4.36 6.43 -154.16 -0.99 3.37 16 8 N -0.46 -8.10 10.37 -12.07 -0.13 -8.23 16 9 C 0.06 0.83 11.17 -17.50 -0.20 0.63 16 10 C -0.14 -2.11 10.10 -39.44 -0.40 -2.51 16 11 C -0.10 -1.99 8.89 -39.09 -0.35 -2.34 16 12 C 0.18 3.57 6.09 -83.43 -0.51 3.06 16 13 N -0.68 -14.55 3.48 -12.20 -0.04 -14.59 16 14 C 0.54 13.62 7.43 -14.89 -0.11 13.51 16 15 O -0.56 -15.63 11.78 5.14 0.06 -15.57 16 16 C -0.53 -13.42 9.32 -37.50 -0.35 -13.77 16 17 H 0.07 1.72 7.85 -52.48 -0.41 1.30 16 18 C 0.09 2.21 5.50 -17.35 -0.10 2.12 16 19 N -0.74 -19.73 11.73 55.55 0.65 -19.08 16 20 Si 0.92 18.29 29.56 -169.99 -5.02 13.27 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 24 H 0.09 1.70 7.06 -51.93 -0.37 1.33 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.07 1.25 7.75 -51.93 -0.40 0.84 16 27 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 29 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 31 H 0.18 4.01 5.48 -52.49 -0.29 3.72 16 32 H 0.40 8.08 6.80 -40.82 -0.28 7.80 16 33 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 LS Contribution 289.52 15.07 4.36 4.36 Total: -1.00 -30.23 289.52 -7.49 -37.72 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -2.99 Total: 13.69 kcal Atomic # 6 Polarization: 8.76 SS G_CDS: -4.10 Total: 4.66 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.21 Total: -58.12 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.06 Total: -15.57 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.02 Total: 13.27 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.23 -7.49 -37.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375368802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.339 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds