Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30490 * 125.72098 * 2 1 4 4 C 1.34154 * 109.36471 * 180.23541 * 3 2 1 5 5 C 1.34634 * 108.21282 * 359.75289 * 4 3 2 6 6 N 1.35918 * 125.72196 * 179.82175 * 2 1 3 7 7 C 1.39788 * 126.48502 * 0.03297 * 6 2 1 8 8 N 1.32221 * 119.74788 * 123.80228 * 7 6 2 9 9 C 1.31913 * 121.73472 * 180.02562 * 8 7 6 10 10 C 1.38278 * 121.02937 * 0.02562 * 9 8 7 11 11 C 1.38575 * 119.38250 * 359.70121 * 10 9 8 12 12 C 1.39239 * 118.40896 * 0.53884 * 11 10 9 13 13 N 1.39481 * 120.52726 * 179.75888 * 12 11 10 14 14 C 1.34778 * 120.00258 * 341.25140 * 13 12 11 15 15 O 1.21759 * 119.99615 * 354.20015 * 14 13 12 16 16 C 1.41824 * 120.00094 * 174.21051 * 14 13 12 17 17 H 1.08004 * 119.99654 * 359.71826 * 16 14 13 18 18 C 1.40132 * 119.99851 * 179.97438 * 16 14 13 19 19 N 1.30635 * 120.00192 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99861 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46578 * 60.00500 * 20 18 16 22 22 H 1.48498 * 109.47066 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47446 * 300.00397 * 20 18 16 24 24 H 1.08998 * 109.47199 * 270.18014 * 1 2 3 25 25 H 1.08998 * 109.47111 * 30.17628 * 1 2 3 26 26 H 1.08998 * 109.47055 * 150.17792 * 1 2 3 27 27 H 1.07998 * 125.89132 * 179.76399 * 4 3 2 28 28 H 1.08002 * 126.58003 * 180.02562 * 5 4 3 29 29 H 1.07997 * 119.48249 * 180.02562 * 9 8 7 30 30 H 1.08004 * 120.30337 * 179.97438 * 10 9 8 31 31 H 1.08001 * 120.79462 * 180.29563 * 11 10 9 32 32 H 0.96998 * 119.99818 * 161.24838 * 13 12 11 33 33 H 0.96995 * 120.00026 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2689 1.0594 0.0000 4 6 3.5561 0.6816 -0.0052 5 6 3.5997 -0.6640 -0.0031 6 7 2.3006 -1.1035 0.0034 7 6 1.8734 -2.4345 0.0069 8 7 2.2815 -3.2569 -0.9445 9 6 1.9025 -4.5200 -0.9795 10 6 1.0567 -5.0373 -0.0155 11 6 0.6065 -4.2159 1.0056 12 6 1.0177 -2.8856 1.0158 13 7 0.5871 -2.0186 2.0200 14 6 -0.4986 -2.3268 2.7567 15 8 -1.1651 -3.3070 2.4780 16 6 -0.8649 -1.5094 3.8563 17 1 -0.2711 -0.6425 4.1060 18 6 -1.9940 -1.8296 4.6219 19 7 -2.7096 -2.8807 4.3225 20 14 -2.4760 -0.7533 6.0706 21 1 -2.7456 0.6269 5.5936 22 1 -3.6982 -1.3029 6.7105 23 1 -1.3680 -0.7280 7.0588 24 1 -0.3633 0.0032 1.0276 25 1 -0.3633 0.8884 -0.5166 26 1 -0.3633 -0.8916 -0.5111 27 1 4.4100 1.3428 -0.0101 28 1 4.4874 -1.2792 -0.0056 29 1 2.2583 -5.1599 -1.7733 30 1 0.7535 -6.0731 -0.0557 31 1 -0.0509 -4.5973 1.7730 32 1 1.0691 -1.1938 2.1882 33 1 -3.4909 -3.1026 4.8527 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375368802.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = 55.212925 kcal Electronic energy + Delta-G solvation = -20675.270569 eV Core-core repulsion = 17508.847715 eV Total energy + Delta-G solvation = -3166.422854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.44005 -41.33861 -39.57792 -35.98813 -35.13089 -34.52258 -32.72800 -32.48294 -30.57467 -28.57688 -27.88617 -25.07528 -24.62431 -22.31304 -21.99856 -21.35836 -19.81323 -19.10165 -18.12134 -17.87831 -16.99970 -16.39667 -16.23100 -15.90799 -15.56694 -15.22189 -14.95494 -14.71850 -14.45497 -14.16676 -13.99370 -13.67636 -13.36996 -13.35710 -13.22361 -12.84696 -12.79720 -12.09856 -11.84660 -11.54862 -11.19377 -11.00320 -10.86634 -10.42923 -9.77905 -9.40314 -9.01044 -8.46639 -7.12185 -0.19524 0.25419 0.98231 1.38206 1.38798 1.50492 1.51977 2.04549 2.14709 2.26070 2.56239 2.69803 3.38542 3.49840 3.55710 3.64346 3.89215 4.15726 4.23088 4.34819 4.44185 4.47471 4.50866 4.71879 4.86863 5.02762 5.13991 5.14992 5.31093 5.45625 5.70856 5.74791 5.89879 5.95261 6.22610 6.65594 6.77740 6.98107 7.09380 8.20657 8.43171 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.006904 C = 0.005346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.651157 B = 4054.812074 C = 5236.157950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.202 3.798 3 N -0.503 5.503 4 C -0.036 4.036 5 C -0.042 4.042 6 N -0.401 5.401 7 C 0.234 3.766 8 N -0.471 5.471 9 C 0.074 3.926 10 C -0.121 4.121 11 C -0.124 4.124 12 C 0.149 3.851 13 N -0.676 5.676 14 C 0.533 3.467 15 O -0.596 6.596 16 C -0.558 4.558 17 H 0.083 0.917 18 C 0.041 3.959 19 N -0.788 5.788 20 Si 0.993 3.007 21 H -0.255 1.255 22 H -0.268 1.268 23 H -0.257 1.257 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.056 0.944 27 H 0.205 0.795 28 H 0.195 0.805 29 H 0.204 0.796 30 H 0.175 0.825 31 H 0.150 0.850 32 H 0.399 0.601 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.169 -0.018 -5.644 9.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.059 4.059 3 N -0.223 5.223 4 C -0.182 4.182 5 C -0.173 4.173 6 N -0.083 5.083 7 C 0.006 3.994 8 N -0.181 5.181 9 C -0.088 4.088 10 C -0.141 4.141 11 C -0.154 4.154 12 C 0.043 3.957 13 N -0.316 5.316 14 C 0.344 3.656 15 O -0.483 6.483 16 C -0.592 4.592 17 H 0.101 0.899 18 C -0.179 4.179 19 N -0.416 5.416 20 Si 0.812 3.188 21 H -0.179 1.179 22 H -0.192 1.192 23 H -0.181 1.181 24 H 0.094 0.906 25 H 0.124 0.876 26 H 0.075 0.925 27 H 0.221 0.779 28 H 0.212 0.788 29 H 0.221 0.779 30 H 0.193 0.807 31 H 0.167 0.833 32 H 0.233 0.767 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.747 0.276 -6.320 10.002 hybrid contribution -0.288 -0.413 1.317 1.410 sum 7.459 -0.137 -5.003 8.983 Atomic orbital electron populations 1.20196 0.84550 1.03614 1.03691 1.23793 0.96032 0.80676 1.05350 1.70263 1.03440 1.27710 1.20863 1.22819 0.94765 0.93052 1.07527 1.23252 0.86772 0.97003 1.10228 1.42713 1.07580 1.03526 1.54508 1.17627 1.03043 0.85018 0.93745 1.66995 1.24092 1.06025 1.20975 1.23068 0.96244 0.89601 0.99875 1.22557 0.95832 1.02373 0.93363 1.22328 1.00354 0.91048 1.01639 1.18944 0.95681 0.91882 0.89179 1.43974 1.30623 1.23012 1.34030 1.17290 0.78592 0.86400 0.83279 1.90510 1.54131 1.31417 1.72269 1.20495 1.12896 1.13112 1.12724 0.89863 1.26845 0.94425 0.95892 1.00757 1.70078 1.12678 1.22940 1.35861 0.85111 0.78527 0.78580 0.76555 1.17887 1.19239 1.18068 0.90568 0.87597 0.92471 0.77865 0.78773 0.77900 0.80733 0.83319 0.76653 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.18 8.91 71.24 0.63 -1.55 16 2 C 0.20 7.38 6.65 137.85 0.92 8.30 16 3 N -0.50 -17.82 11.24 -187.52 -2.11 -19.93 16 4 C -0.04 -1.05 11.85 83.51 0.99 -0.06 16 5 C -0.04 -1.26 11.52 83.03 0.96 -0.31 16 6 N -0.40 -14.20 2.57 -341.69 -0.88 -15.08 16 7 C 0.23 8.64 6.43 133.00 0.86 9.50 16 8 N -0.47 -15.48 10.37 -192.09 -1.99 -17.47 16 9 C 0.07 1.93 11.17 84.69 0.95 2.87 16 10 C -0.12 -3.44 10.10 22.36 0.23 -3.21 16 11 C -0.12 -4.91 8.89 22.59 0.20 -4.71 16 12 C 0.15 6.11 6.09 38.54 0.23 6.34 16 13 N -0.68 -30.20 3.48 -310.70 -1.08 -31.28 16 14 C 0.53 28.34 7.43 85.13 0.63 28.97 16 15 O -0.60 -35.09 11.78 -4.54 -0.05 -35.14 16 16 C -0.56 -29.26 9.32 23.62 0.22 -29.04 16 17 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 18 C 0.04 2.08 5.50 85.33 0.47 2.55 16 19 N -0.79 -43.44 11.73 21.85 0.26 -43.18 16 20 Si 0.99 37.74 29.56 68.60 2.03 39.76 16 21 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 22 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 24 H 0.08 2.92 7.06 -2.39 -0.02 2.90 16 25 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 26 H 0.06 2.11 7.75 -2.39 -0.02 2.09 16 27 H 0.20 4.32 8.06 -2.91 -0.02 4.30 16 28 H 0.20 4.69 8.06 -2.91 -0.02 4.67 16 29 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.18 3.56 8.06 -2.91 -0.02 3.54 16 31 H 0.15 6.96 5.48 -2.91 -0.02 6.94 16 32 H 0.40 16.95 6.80 -92.71 -0.63 16.32 16 33 H 0.28 14.07 8.29 -92.71 -0.77 13.30 16 Total: -1.00 -68.28 289.52 3.99 -64.29 By element: Atomic # 1 Polarization: 37.83 SS G_CDS: 0.53 Total: 38.37 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 7.28 Total: 19.66 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -5.80 Total: -126.94 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.05 Total: -35.14 kcal Atomic # 14 Polarization: 37.74 SS G_CDS: 2.03 Total: 39.76 kcal Total: -68.28 3.99 -64.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375368802.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.501 kcal (2) G-P(sol) polarization free energy of solvation -68.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds