Wall clock time and date at job start Mon Mar 30 2020 01:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34833 * 125.89503 * 2 1 4 4 C 1.36423 * 107.61158 * 180.02562 * 3 2 1 5 5 C 1.48493 * 126.21854 * 179.97438 * 4 3 2 6 6 C 1.39421 * 120.46546 * 359.74655 * 5 4 3 7 7 N 1.31799 * 120.93479 * 179.76939 * 6 5 4 8 8 C 1.31707 * 122.01601 * 0.50029 * 7 6 5 9 9 C 1.39654 * 120.81135 * 359.76841 * 8 7 6 10 10 C 1.47744 * 120.50603 * 179.97438 * 9 8 7 11 11 O 1.21584 * 119.99547 * 180.02562 * 10 9 8 12 12 N 1.34779 * 120.00023 * 0.02562 * 10 9 8 13 13 C 1.36873 * 119.99627 * 179.97438 * 12 10 9 14 14 H 1.07993 * 119.99960 * 0.02562 * 13 12 10 15 15 C 1.39050 * 119.99638 * 180.02562 * 13 12 10 16 16 N 1.31357 * 119.99885 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00162 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46757 * 89.99805 * 17 15 13 19 19 H 1.48496 * 109.47325 * 210.00039 * 17 15 13 20 20 H 1.48507 * 109.47203 * 330.00186 * 17 15 13 21 21 C 1.39412 * 120.45998 * 180.02562 * 5 4 3 22 22 C 1.40834 * 107.55464 * 0.02562 * 4 3 2 23 23 N 1.30674 * 108.10463 * 359.97438 * 22 4 3 24 24 H 1.09005 * 109.46808 * 270.01856 * 1 2 3 25 25 H 1.08994 * 109.47407 * 30.02161 * 1 2 3 26 26 H 1.09000 * 109.47298 * 150.02861 * 1 2 3 27 27 H 1.08006 * 126.18887 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.53444 * 0.02562 * 6 5 4 29 29 H 1.07998 * 119.59320 * 179.74980 * 8 7 6 30 30 H 0.96998 * 120.00078 * 0.02562 * 12 10 9 31 31 H 0.96998 * 120.00077 * 180.02562 * 16 15 13 32 32 H 1.08001 * 120.91443 * 0.02562 * 21 5 4 33 33 H 1.08000 * 125.94561 * 180.26579 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2556 1.0923 0.0000 4 6 3.5509 0.6643 -0.0006 5 6 4.7599 1.5266 -0.0013 6 6 4.6376 2.9154 -0.0068 7 7 5.7043 3.6895 -0.0030 8 6 6.9253 3.1958 -0.0036 9 6 7.1389 1.8157 -0.0036 10 6 8.5115 1.2691 -0.0049 11 8 8.6867 0.0660 -0.0054 12 7 9.5694 2.1043 -0.0056 13 6 10.8410 1.5979 -0.0063 14 1 10.9966 0.5292 -0.0067 15 6 11.9324 2.4595 -0.0064 16 7 13.1528 1.9736 -0.0076 17 14 11.6631 4.3080 -0.0050 18 1 11.5927 4.7968 1.3955 19 1 12.7910 4.9731 -0.7053 20 1 10.3914 4.6235 -0.7040 21 6 6.0330 0.9586 -0.0024 22 6 3.5330 -0.7439 -0.0015 23 7 2.2859 -1.1342 -0.0010 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3634 -0.8902 -0.5134 27 1 1.9233 2.1200 -0.0004 28 1 3.6548 3.3633 -0.0101 29 1 7.7718 3.8665 -0.0045 30 1 9.4295 3.0641 -0.0049 31 1 13.9141 2.5746 -0.0073 32 1 6.1623 -0.1137 -0.0031 33 1 4.3992 -1.3890 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000376736208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:20 Heat of formation + Delta-G solvation = 83.116071 kcal Electronic energy + Delta-G solvation = -19251.310747 eV Core-core repulsion = 16086.097864 eV Total energy + Delta-G solvation = -3165.212883 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.43081 -39.87849 -37.94860 -34.29361 -33.95427 -32.41896 -32.06256 -31.46209 -29.26878 -26.84359 -25.65382 -23.57002 -23.27998 -21.09471 -20.74696 -19.50048 -18.75182 -17.49541 -16.54746 -16.32067 -15.72354 -15.62557 -14.97056 -14.65108 -14.17438 -14.09058 -13.61394 -13.28723 -13.24794 -13.01273 -12.88033 -12.83849 -12.54768 -12.36952 -11.77468 -11.31633 -11.00603 -10.69872 -10.18710 -10.11482 -9.77198 -9.67236 -9.50201 -9.12658 -8.62308 -8.34753 -7.93464 -6.50533 -3.93745 0.86342 1.30255 1.78869 2.24726 2.75472 2.97032 3.01062 3.08596 3.67903 3.96666 4.16319 4.37254 4.40399 4.52570 4.59346 4.77711 4.82067 4.98383 5.04307 5.05443 5.17441 5.21967 5.36967 5.45751 5.65560 5.85323 5.87877 6.35919 6.38371 6.47903 6.71156 6.83022 7.38768 7.45781 7.98627 8.11157 8.41916 8.77261 9.23475 9.68146 10.60739 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.041013 B = 0.003792 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.551679 B = 7382.213551 C = 8049.619871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.376 5.376 3 C 0.068 3.932 4 C -0.189 4.189 5 C -0.052 4.052 6 C 0.091 3.909 7 N -0.478 5.478 8 C 0.096 3.904 9 C -0.135 4.135 10 C 0.476 3.524 11 O -0.577 6.577 12 N -0.565 5.565 13 C -0.299 4.299 14 H 0.126 0.874 15 C 0.044 3.956 16 N -0.862 5.862 17 Si 0.877 3.123 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.265 1.265 21 C -0.034 4.034 22 C 0.069 3.931 23 N -0.296 5.296 24 H 0.075 0.925 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.179 0.821 28 H 0.149 0.851 29 H 0.152 0.848 30 H 0.372 0.628 31 H 0.278 0.722 32 H 0.144 0.856 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.006 3.175 -0.035 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.157 5.157 3 C -0.079 4.079 4 C -0.202 4.202 5 C -0.055 4.055 6 C -0.068 4.068 7 N -0.186 5.186 8 C -0.062 4.062 9 C -0.140 4.140 10 C 0.264 3.736 11 O -0.462 6.462 12 N -0.201 5.201 13 C -0.427 4.427 14 H 0.143 0.857 15 C -0.161 4.161 16 N -0.500 5.500 17 Si 0.702 3.298 18 H -0.190 1.190 19 H -0.196 1.196 20 H -0.190 1.190 21 C -0.061 4.061 22 C -0.118 4.118 23 N -0.117 5.117 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.196 0.804 28 H 0.167 0.833 29 H 0.169 0.831 30 H 0.206 0.794 31 H 0.089 0.911 32 H 0.162 0.838 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -23.674 2.299 -0.034 23.786 hybrid contribution 0.665 1.337 -0.005 1.493 sum -23.010 3.636 -0.038 23.295 Atomic orbital electron populations 1.21879 0.74004 1.04602 1.03489 1.48406 1.06785 1.03817 1.56675 1.22504 0.90525 0.93451 1.01387 1.18724 0.91653 0.92947 1.16827 1.18926 0.91562 0.93489 1.01535 1.22642 0.97302 0.89178 0.97699 1.67497 0.98838 1.40108 1.12115 1.22877 0.94530 0.92593 0.96236 1.21252 0.95954 0.94544 1.02278 1.17355 0.83117 0.86824 0.86294 1.90642 1.85254 1.14191 1.56137 1.42216 1.06589 1.07480 1.63843 1.19564 0.79301 0.96823 1.47030 0.85691 1.25139 0.94883 0.99069 0.97048 1.69593 0.97904 1.36099 1.46419 0.86692 0.79012 0.84633 0.79435 1.19040 1.19643 1.19047 1.21575 0.89731 1.01001 0.93774 1.24097 0.95209 0.94326 0.98150 1.77295 1.01772 1.07958 1.24627 0.90627 0.89371 0.89187 0.80432 0.83340 0.83123 0.79368 0.91093 0.83783 0.79318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 11.46 59.85 0.69 1.19 16 2 N -0.38 -3.68 4.00 -67.89 -0.27 -3.95 16 3 C 0.07 0.65 10.89 -16.89 -0.18 0.46 16 4 C -0.19 -2.32 6.05 -105.34 -0.64 -2.95 16 5 C -0.05 -0.72 5.89 -104.79 -0.62 -1.34 16 6 C 0.09 1.21 10.73 -17.13 -0.18 1.02 16 7 N -0.48 -7.54 10.33 -12.63 -0.13 -7.67 16 8 C 0.10 1.65 10.71 -17.08 -0.18 1.46 16 9 C -0.13 -2.55 5.89 -104.86 -0.62 -3.17 16 10 C 0.48 11.21 7.73 -12.37 -0.10 11.12 16 11 O -0.58 -15.64 15.99 5.29 0.08 -15.56 16 12 N -0.57 -13.51 5.04 -11.87 -0.06 -13.57 16 13 C -0.30 -8.25 10.16 -15.00 -0.15 -8.41 16 14 H 0.13 3.92 7.38 -52.49 -0.39 3.53 16 15 C 0.04 1.17 5.50 -17.45 -0.10 1.08 16 16 N -0.86 -24.24 13.95 55.50 0.77 -23.47 16 17 Si 0.88 18.71 27.74 -169.99 -4.71 14.00 16 18 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.17 6.52 56.52 0.37 -4.80 16 21 C -0.03 -0.56 9.23 -38.52 -0.36 -0.92 16 22 C 0.07 0.87 11.44 -17.06 -0.20 0.68 16 23 N -0.30 -3.76 12.54 30.80 0.39 -3.38 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.18 1.01 7.30 -52.48 -0.38 0.62 16 28 H 0.15 1.41 7.02 -52.48 -0.37 1.04 16 29 H 0.15 2.40 6.41 -52.49 -0.34 2.07 16 30 H 0.37 7.82 3.81 -40.82 -0.16 7.66 16 31 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.14 2.37 6.84 -52.49 -0.36 2.01 16 33 H 0.19 2.12 7.41 -52.49 -0.39 1.73 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -34.13 294.90 -4.93 -39.06 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -2.81 Total: 9.87 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -2.63 Total: 0.23 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.70 Total: -52.04 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.08 Total: -15.56 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.71 Total: 14.00 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.13 -4.93 -39.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376736208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.178 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds