Wall clock time and date at job start Mon Mar 30 2020 01:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34833 * 125.89503 * 2 1 4 4 C 1.36423 * 107.61158 * 180.02562 * 3 2 1 5 5 C 1.48493 * 126.21854 * 179.97438 * 4 3 2 6 6 C 1.39421 * 120.46546 * 359.74655 * 5 4 3 7 7 N 1.31799 * 120.93479 * 179.76939 * 6 5 4 8 8 C 1.31707 * 122.01601 * 0.50029 * 7 6 5 9 9 C 1.39654 * 120.81135 * 359.76841 * 8 7 6 10 10 C 1.47744 * 120.50603 * 179.97438 * 9 8 7 11 11 O 1.21584 * 119.99547 * 180.02562 * 10 9 8 12 12 N 1.34779 * 120.00023 * 0.02562 * 10 9 8 13 13 C 1.36873 * 119.99627 * 179.97438 * 12 10 9 14 14 H 1.07993 * 119.99960 * 0.02562 * 13 12 10 15 15 C 1.39050 * 119.99638 * 180.02562 * 13 12 10 16 16 N 1.31357 * 119.99885 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00162 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.46757 * 89.99805 * 17 15 13 19 19 H 1.48496 * 109.47325 * 210.00039 * 17 15 13 20 20 H 1.48507 * 109.47203 * 330.00186 * 17 15 13 21 21 C 1.39412 * 120.45998 * 180.02562 * 5 4 3 22 22 C 1.40834 * 107.55464 * 0.02562 * 4 3 2 23 23 N 1.30674 * 108.10463 * 359.97438 * 22 4 3 24 24 H 1.09005 * 109.46808 * 270.01856 * 1 2 3 25 25 H 1.08994 * 109.47407 * 30.02161 * 1 2 3 26 26 H 1.09000 * 109.47298 * 150.02861 * 1 2 3 27 27 H 1.08006 * 126.18887 * 359.97438 * 3 2 1 28 28 H 1.08004 * 119.53444 * 0.02562 * 6 5 4 29 29 H 1.07998 * 119.59320 * 179.74980 * 8 7 6 30 30 H 0.96998 * 120.00078 * 0.02562 * 12 10 9 31 31 H 0.96998 * 120.00077 * 180.02562 * 16 15 13 32 32 H 1.08001 * 120.91443 * 0.02562 * 21 5 4 33 33 H 1.08000 * 125.94561 * 180.26579 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2556 1.0923 0.0000 4 6 3.5509 0.6643 -0.0006 5 6 4.7599 1.5266 -0.0013 6 6 4.6376 2.9154 -0.0068 7 7 5.7043 3.6895 -0.0030 8 6 6.9253 3.1958 -0.0036 9 6 7.1389 1.8157 -0.0036 10 6 8.5115 1.2691 -0.0049 11 8 8.6867 0.0660 -0.0054 12 7 9.5694 2.1043 -0.0056 13 6 10.8410 1.5979 -0.0063 14 1 10.9966 0.5292 -0.0067 15 6 11.9324 2.4595 -0.0064 16 7 13.1528 1.9736 -0.0076 17 14 11.6631 4.3080 -0.0050 18 1 11.5927 4.7968 1.3955 19 1 12.7910 4.9731 -0.7053 20 1 10.3914 4.6235 -0.7040 21 6 6.0330 0.9586 -0.0024 22 6 3.5330 -0.7439 -0.0015 23 7 2.2859 -1.1342 -0.0010 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3634 -0.8902 -0.5134 27 1 1.9233 2.1200 -0.0004 28 1 3.6548 3.3633 -0.0101 29 1 7.7718 3.8665 -0.0045 30 1 9.4295 3.0641 -0.0049 31 1 13.9141 2.5746 -0.0073 32 1 6.1623 -0.1137 -0.0031 33 1 4.3992 -1.3890 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376736208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:20 Heat of formation + Delta-G solvation = 57.435621 kcal Electronic energy + Delta-G solvation = -19252.424335 eV Core-core repulsion = 16086.097864 eV Total energy + Delta-G solvation = -3166.326470 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.29652 -41.25514 -39.69282 -36.23180 -34.88669 -33.99529 -33.34992 -32.91256 -30.20336 -27.56445 -27.45219 -24.90131 -24.56282 -22.24845 -21.65794 -21.20329 -20.41520 -18.72052 -17.83531 -17.54831 -17.03657 -16.68031 -16.40919 -15.82973 -15.66341 -15.38798 -15.08199 -14.62943 -14.57602 -14.28396 -14.13565 -13.83456 -13.56448 -13.45105 -13.04579 -12.89644 -12.48880 -12.01220 -11.86609 -11.63409 -11.26690 -11.00744 -10.54504 -10.43921 -10.34572 -10.33476 -8.89684 -8.51065 -6.09037 -0.33369 0.05336 0.93826 1.28822 1.34587 1.42069 1.62399 1.70989 2.11642 2.17246 2.68740 2.91872 3.21122 3.34348 3.50858 3.76979 3.90271 3.92918 3.98041 4.13144 4.25439 4.35273 4.49010 4.60569 4.73655 4.76683 4.81818 5.11928 5.24861 5.42547 5.49667 5.63265 5.85179 6.06074 6.45727 6.61953 6.73676 6.88010 7.23406 7.77942 8.65213 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.041013 B = 0.003792 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.551679 B = 7382.213551 C = 8049.619871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.372 5.372 3 C 0.099 3.901 4 C -0.223 4.223 5 C -0.035 4.035 6 C 0.112 3.888 7 N -0.481 5.481 8 C 0.101 3.899 9 C -0.161 4.161 10 C 0.483 3.517 11 O -0.623 6.623 12 N -0.566 5.566 13 C -0.332 4.332 14 H 0.063 0.937 15 C -0.005 4.005 16 N -0.917 5.917 17 Si 0.954 3.046 18 H -0.251 1.251 19 H -0.266 1.266 20 H -0.232 1.232 21 C -0.045 4.045 22 C 0.053 3.947 23 N -0.330 5.330 24 H 0.090 0.910 25 H 0.124 0.876 26 H 0.089 0.911 27 H 0.229 0.771 28 H 0.203 0.797 29 H 0.162 0.838 30 H 0.389 0.611 31 H 0.285 0.715 32 H 0.132 0.868 33 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.652 7.030 -0.082 28.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.152 5.152 3 C -0.050 4.050 4 C -0.236 4.236 5 C -0.038 4.038 6 C -0.046 4.046 7 N -0.189 5.189 8 C -0.056 4.056 9 C -0.166 4.166 10 C 0.272 3.728 11 O -0.511 6.511 12 N -0.204 5.204 13 C -0.461 4.461 14 H 0.081 0.919 15 C -0.206 4.206 16 N -0.556 5.556 17 Si 0.773 3.227 18 H -0.175 1.175 19 H -0.190 1.190 20 H -0.155 1.155 21 C -0.072 4.072 22 C -0.133 4.133 23 N -0.151 5.151 24 H 0.108 0.892 25 H 0.142 0.858 26 H 0.107 0.893 27 H 0.245 0.755 28 H 0.219 0.781 29 H 0.179 0.821 30 H 0.226 0.774 31 H 0.094 0.906 32 H 0.150 0.850 33 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -28.365 6.139 -0.082 29.022 hybrid contribution 1.695 -0.035 0.017 1.696 sum -26.670 6.105 -0.065 27.360 Atomic orbital electron populations 1.22326 0.71174 1.06431 1.05041 1.48859 1.08373 1.03184 1.54756 1.23177 0.89111 0.95203 0.97545 1.18697 0.92291 0.92394 1.20178 1.19025 0.90816 0.94298 0.99688 1.23493 0.98731 0.88576 0.93824 1.67656 0.98610 1.40082 1.12532 1.22949 0.95826 0.91378 0.95496 1.20844 0.93291 0.96029 1.06466 1.18209 0.84930 0.86239 0.83442 1.90603 1.86544 1.16584 1.57334 1.41934 1.05240 1.08286 1.64984 1.19090 0.81820 0.94616 1.50604 0.91861 1.26133 0.93733 1.05406 0.95373 1.69747 0.99205 1.38683 1.47927 0.85525 0.80535 0.76111 0.80560 1.17482 1.19038 1.15526 1.21642 0.90823 1.00548 0.94182 1.24180 0.95427 0.95151 0.98549 1.77254 1.02059 1.09905 1.25870 0.89170 0.85769 0.89255 0.75516 0.78079 0.82099 0.77376 0.90554 0.84986 0.79957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 11.46 127.77 1.46 1.96 16 2 N -0.37 -5.84 4.00 -368.71 -1.48 -7.31 16 3 C 0.10 1.34 10.89 83.81 0.91 2.26 16 4 C -0.22 -4.81 6.05 -20.33 -0.12 -4.93 16 5 C -0.04 -0.88 5.89 -19.97 -0.12 -1.00 16 6 C 0.11 2.42 10.73 84.98 0.91 3.33 16 7 N -0.48 -13.12 10.33 -193.87 -2.00 -15.13 16 8 C 0.10 3.23 10.71 85.05 0.91 4.14 16 9 C -0.16 -6.11 5.89 -20.02 -0.12 -6.23 16 10 C 0.48 23.84 7.73 86.76 0.67 24.51 16 11 O -0.62 -36.40 15.99 -3.98 -0.06 -36.46 16 12 N -0.57 -28.02 5.04 -309.72 -1.56 -29.58 16 13 C -0.33 -19.65 10.16 84.10 0.85 -18.80 16 14 H 0.06 4.41 7.38 -2.91 -0.02 4.39 16 15 C -0.01 -0.30 5.50 84.96 0.47 0.17 16 16 N -0.92 -54.31 13.95 21.68 0.30 -54.01 16 17 Si 0.95 38.23 27.74 68.60 1.90 40.13 16 18 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 19 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 20 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 21 C -0.04 -1.50 9.23 22.96 0.21 -1.29 16 22 C 0.05 1.31 11.44 85.50 0.98 2.29 16 23 N -0.33 -7.91 12.54 -56.46 -0.71 -8.62 16 24 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 25 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 26 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.23 0.66 7.30 -2.91 -0.02 0.64 16 28 H 0.20 2.18 7.02 -2.91 -0.02 2.16 16 29 H 0.16 4.69 6.41 -2.91 -0.02 4.67 16 30 H 0.39 16.14 3.81 -92.71 -0.35 15.79 16 31 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.13 4.64 6.84 -2.91 -0.02 4.62 16 33 H 0.18 4.41 7.41 -2.91 -0.02 4.38 16 Total: -1.00 -82.72 294.90 4.17 -78.54 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.76 Total: 26.03 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 7.02 Total: 6.40 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -5.44 Total: -114.65 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.06 Total: -36.46 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 1.90 Total: 40.13 kcal Total: -82.72 4.17 -78.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376736208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.980 kcal (2) G-P(sol) polarization free energy of solvation -82.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds