Wall clock time and date at job start Mon Mar 30 2020 01:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34521 * 126.74356 * 2 1 4 4 N 1.30669 * 108.29746 * 179.73777 * 3 2 1 5 5 C 1.33978 * 109.78110 * 359.97438 * 4 3 2 6 6 C 1.48413 * 125.65321 * 180.02562 * 5 4 3 7 7 C 1.39441 * 120.08063 * 180.02562 * 6 5 4 8 8 C 1.38094 * 120.04888 * 179.97438 * 7 6 5 9 9 C 1.38173 * 120.20087 * 0.02562 * 8 7 6 10 10 C 1.39090 * 120.15800 * 359.97438 * 9 8 7 11 11 N 1.39541 * 120.02159 * 180.02562 * 10 9 8 12 12 C 1.34775 * 119.99980 * 213.33465 * 11 10 9 13 13 O 1.21742 * 120.00051 * 5.27565 * 12 11 10 14 14 C 1.46163 * 120.00086 * 185.27402 * 12 11 10 15 15 H 1.08002 * 119.99476 * 0.02562 * 14 12 11 16 16 C 1.40120 * 120.00362 * 180.02562 * 14 12 11 17 17 N 1.30635 * 119.99527 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00171 * 180.02562 * 16 14 12 19 19 H 1.48495 * 109.47145 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47118 * 120.00016 * 18 16 14 21 21 H 1.48502 * 109.46814 * 239.99639 * 18 16 14 22 22 C 1.38843 * 119.95369 * 359.74868 * 10 9 8 23 23 N 1.31501 * 108.69771 * 0.02562 * 5 4 3 24 24 H 1.09000 * 109.47279 * 90.00335 * 1 2 3 25 25 H 1.09000 * 109.47226 * 210.00096 * 1 2 3 26 26 H 1.08997 * 109.47655 * 330.00258 * 1 2 3 27 27 H 1.08003 * 125.84781 * 359.72798 * 3 2 1 28 28 H 1.08003 * 119.97384 * 359.97438 * 7 6 5 29 29 H 1.07991 * 119.89961 * 180.02562 * 8 7 6 30 30 H 1.07995 * 119.91515 * 180.02562 * 9 8 7 31 31 H 0.96996 * 120.00176 * 33.33450 * 11 10 9 32 32 H 0.97007 * 119.99531 * 180.02562 * 17 16 14 33 33 H 1.08000 * 120.09989 * 180.25430 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2698 1.0779 0.0000 4 7 3.5093 0.6645 0.0057 5 6 3.5405 -0.6749 0.0100 6 6 4.7663 -1.5116 0.0175 7 6 4.6632 -2.9022 0.0210 8 6 5.8042 -3.6801 0.0274 9 6 7.0512 -3.0850 0.0310 10 6 7.1638 -1.6987 0.0276 11 7 8.4246 -1.1007 0.0308 12 6 8.6131 0.0710 0.6697 13 8 7.7103 0.5596 1.3241 14 6 9.9015 0.7549 0.5769 15 1 10.7023 0.3216 -0.0039 16 6 10.0977 1.9727 1.2416 17 7 9.1289 2.4970 1.9438 18 14 11.7441 2.8472 1.1225 19 1 12.6666 2.0519 0.2730 20 1 11.5489 4.1901 0.5194 21 1 12.3258 2.9944 2.4809 22 6 6.0210 -0.9103 0.0153 23 7 2.3051 -1.1254 0.0065 24 1 -0.3634 -0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.9466 2.1085 -0.0042 28 1 3.6903 -3.3712 0.0186 29 1 5.7216 -4.7569 0.0296 30 1 7.9404 -3.6978 0.0357 31 1 9.1653 -1.5282 -0.4269 32 1 9.2646 3.3403 2.4036 33 1 6.1057 0.1663 0.0085 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000376910377.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:02 Heat of formation + Delta-G solvation = 56.108327 kcal Electronic energy + Delta-G solvation = -19563.933376 eV Core-core repulsion = 16397.549349 eV Total energy + Delta-G solvation = -3166.384026 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.03318 -40.74476 -38.72821 -35.60917 -34.94292 -34.44982 -32.72171 -31.63821 -30.49939 -28.16909 -27.89930 -24.51408 -24.03419 -22.80499 -21.83543 -21.10075 -19.38489 -18.42710 -17.53265 -17.33225 -16.95372 -16.87252 -16.29748 -15.84574 -15.39635 -15.23615 -14.60012 -14.45391 -14.30840 -14.12533 -13.97121 -13.43810 -13.17404 -12.80886 -12.77820 -12.71253 -12.47944 -12.26293 -11.97694 -11.30838 -11.06039 -10.97875 -10.90273 -10.63404 -9.90308 -9.41435 -8.75388 -8.33599 -6.91956 -0.09848 0.57593 0.84090 1.40641 1.41055 1.42759 1.59477 1.96506 2.22899 2.43117 2.89419 3.04426 3.11164 3.49727 3.62517 3.92499 4.12747 4.31062 4.39289 4.42735 4.44639 4.68367 4.71903 4.79795 4.99428 5.17527 5.26612 5.27870 5.52680 5.54046 5.63393 5.82297 5.91472 5.92688 6.20033 6.41331 6.80441 7.06938 7.38404 8.40059 8.60667 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.004729 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.075672 B = 5919.939516 C = 7120.654608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.383 5.383 3 C 0.259 3.741 4 N -0.585 5.585 5 C 0.250 3.750 6 C -0.021 4.021 7 C -0.122 4.122 8 C -0.088 4.088 9 C -0.147 4.147 10 C 0.153 3.847 11 N -0.692 5.692 12 C 0.526 3.474 13 O -0.604 6.604 14 C -0.565 4.565 15 H 0.094 0.906 16 C 0.028 3.972 17 N -0.815 5.815 18 Si 1.003 2.997 19 H -0.244 1.244 20 H -0.269 1.269 21 H -0.268 1.268 22 C -0.116 4.116 23 N -0.325 5.325 24 H 0.097 0.903 25 H 0.094 0.906 26 H 0.128 0.872 27 H 0.268 0.732 28 H 0.142 0.858 29 H 0.173 0.827 30 H 0.155 0.845 31 H 0.409 0.591 32 H 0.276 0.724 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.985 -6.921 -5.529 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.174 5.174 3 C -0.037 4.037 4 N -0.312 5.312 5 C -0.029 4.029 6 C -0.024 4.024 7 C -0.143 4.143 8 C -0.106 4.106 9 C -0.169 4.169 10 C 0.056 3.944 11 N -0.337 5.337 12 C 0.333 3.667 13 O -0.489 6.489 14 C -0.601 4.601 15 H 0.113 0.887 16 C -0.188 4.188 17 N -0.444 5.444 18 Si 0.822 3.178 19 H -0.167 1.167 20 H -0.194 1.194 21 H -0.192 1.192 22 C -0.139 4.139 23 N -0.155 5.155 24 H 0.116 0.884 25 H 0.112 0.888 26 H 0.147 0.853 27 H 0.284 0.716 28 H 0.159 0.841 29 H 0.190 0.810 30 H 0.172 0.828 31 H 0.245 0.755 32 H 0.086 0.914 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.718 -6.873 -4.958 16.125 hybrid contribution 0.649 0.947 -0.011 1.148 sum -13.069 -5.926 -4.969 15.186 Atomic orbital electron populations 1.22424 0.70282 1.06842 1.05552 1.50779 1.09669 1.03233 1.53768 1.26910 0.84409 0.97289 0.95076 1.70583 1.23454 1.11644 1.25551 1.22418 0.92120 0.89149 0.99229 1.17556 0.87642 0.92816 1.04406 1.21203 1.00390 0.90593 1.02154 1.21210 0.90050 1.01322 0.98016 1.21375 1.00150 0.91249 1.04081 1.18126 0.85824 0.92790 0.97690 1.43674 1.09009 1.24672 1.56337 1.18815 0.89875 0.79423 0.78627 1.90639 1.46185 1.66802 1.45300 1.21436 0.97957 1.06962 1.33706 0.88744 1.27049 1.02393 0.97353 0.92024 1.70192 1.34567 1.16530 1.23091 0.84893 0.75893 0.77871 0.79155 1.16663 1.19407 1.19247 1.21057 0.91458 0.99976 1.01431 1.78019 1.00634 1.09175 1.27627 0.88411 0.88776 0.85343 0.71631 0.84051 0.80967 0.82775 0.75460 0.91366 0.88328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.98 11.52 127.77 1.47 2.45 16 2 N -0.38 -9.71 4.04 -373.67 -1.51 -11.22 16 3 C 0.26 7.21 12.64 180.38 2.28 9.49 16 4 N -0.59 -24.51 10.82 -193.08 -2.09 -26.60 16 5 C 0.25 10.44 7.77 137.47 1.07 11.51 16 6 C -0.02 -0.90 5.87 -20.06 -0.12 -1.02 16 7 C -0.12 -4.14 9.68 22.53 0.22 -3.92 16 8 C -0.09 -2.52 10.03 22.22 0.22 -2.30 16 9 C -0.15 -4.92 9.96 22.46 0.22 -4.69 16 10 C 0.15 6.89 6.27 38.26 0.24 7.13 16 11 N -0.69 -33.12 5.32 -307.63 -1.64 -34.76 16 12 C 0.53 31.50 7.47 86.30 0.64 32.15 16 13 O -0.60 -41.78 12.71 -4.48 -0.06 -41.84 16 14 C -0.56 -32.23 9.53 24.79 0.24 -31.99 16 15 H 0.09 4.75 7.85 -2.91 -0.02 4.73 16 16 C 0.03 1.56 5.50 85.33 0.47 2.03 16 17 N -0.81 -50.59 11.82 21.85 0.26 -50.33 16 18 Si 1.00 40.98 29.56 68.60 2.03 43.01 16 19 H -0.24 -9.11 7.11 99.48 0.71 -8.40 16 20 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 21 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 22 C -0.12 -5.81 8.28 22.63 0.19 -5.62 16 23 N -0.32 -11.29 12.32 -52.34 -0.65 -11.94 16 24 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.27 4.06 8.06 -2.91 -0.02 4.04 16 28 H 0.14 4.13 7.83 -2.91 -0.02 4.11 16 29 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 30 H 0.15 4.05 8.06 -2.91 -0.02 4.03 16 31 H 0.41 16.14 8.79 -92.71 -0.82 15.32 16 32 H 0.28 15.47 8.29 -92.70 -0.77 14.70 16 33 H 0.10 5.98 6.20 -2.91 -0.02 5.96 16 Total: -1.00 -92.12 300.01 3.84 -88.28 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 0.34 Total: 30.17 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 7.15 Total: 15.22 kcal Atomic # 7 Polarization: -129.22 SS G_CDS: -5.62 Total: -134.84 kcal Atomic # 8 Polarization: -41.78 SS G_CDS: -0.06 Total: -41.84 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -92.12 3.84 -88.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000376910377.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.390 kcal (2) G-P(sol) polarization free energy of solvation -92.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds