Wall clock time and date at job start Mon Mar 30 2020 01:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28523 * 124.44132 * 2 1 4 4 C 1.31129 * 109.06430 * 179.97438 * 3 2 1 5 5 C 1.40954 * 105.77317 * 0.26257 * 4 3 2 6 6 C 1.47754 * 127.23795 * 179.69551 * 5 4 3 7 7 O 1.21564 * 119.99902 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99886 * 180.02562 * 6 5 4 9 9 C 1.39142 * 120.00233 * 176.68983 * 8 6 5 10 10 C 1.39498 * 119.83730 * 217.55895 * 9 8 6 11 11 C 1.36365 * 120.16709 * 179.75751 * 10 9 8 12 12 C 1.40881 * 119.82698 * 0.51812 * 11 10 9 13 13 C 1.41140 * 120.15869 * 179.71801 * 12 11 10 14 14 H 1.07999 * 119.99737 * 157.93188 * 13 12 11 15 15 C 1.39915 * 120.00178 * 337.92673 * 13 12 11 16 16 N 1.30869 * 119.99896 * 327.60199 * 15 13 12 17 17 Si 1.86797 * 120.00006 * 147.59860 * 15 13 12 18 18 H 1.48499 * 109.47121 * 94.98777 * 17 15 13 19 19 H 1.48501 * 109.46961 * 214.99034 * 17 15 13 20 20 H 1.48502 * 109.46776 * 334.98838 * 17 15 13 21 21 C 1.40874 * 119.67607 * 359.74043 * 12 11 10 22 22 C 1.36363 * 119.83496 * 359.97438 * 21 12 11 23 23 N 1.28590 * 124.43976 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47080 * 89.97672 * 1 2 3 25 25 H 1.08992 * 109.47469 * 209.97405 * 1 2 3 26 26 H 1.09000 * 109.47186 * 329.97875 * 1 2 3 27 27 H 1.08000 * 127.11453 * 180.02562 * 4 3 2 28 28 H 0.97006 * 120.00049 * 356.68856 * 8 6 5 29 29 H 1.08007 * 119.91926 * 359.97438 * 10 9 8 30 30 H 1.08000 * 120.08349 * 180.23241 * 11 10 9 31 31 H 0.96998 * 119.99948 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.08118 * 179.97438 * 21 12 11 33 33 H 1.07994 * 119.91830 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1918 1.0599 0.0000 4 6 3.4562 0.7122 0.0006 5 6 3.4659 -0.6973 -0.0053 6 6 4.6484 -1.5832 -0.0134 7 8 5.7661 -1.1051 -0.0151 8 7 4.4878 -2.9213 -0.0188 9 6 5.5991 -3.7551 -0.0960 10 6 5.5342 -4.9305 -0.8445 11 6 6.6208 -5.7501 -0.9287 12 6 7.8075 -5.4126 -0.2485 13 6 8.9344 -6.2588 -0.3261 14 1 9.9201 -5.8650 -0.1270 15 6 8.7746 -7.6079 -0.6607 16 7 7.6910 -8.2474 -0.3007 17 14 10.1078 -8.4963 -1.6213 18 1 11.0103 -9.2033 -0.6775 19 1 9.4828 -9.4811 -2.5404 20 1 10.8900 -7.5105 -2.4097 21 6 7.8636 -4.2267 0.5098 22 6 6.7708 -3.4140 0.5800 23 7 2.1922 -1.0605 0.0005 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3634 -0.8901 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 4.3129 1.3698 0.0011 28 1 3.5975 -3.3032 0.0311 29 1 4.6222 -5.1904 -1.3614 30 1 6.5703 -6.6579 -1.5116 31 1 7.5800 -9.1826 -0.5330 32 1 8.7698 -3.9618 1.0341 33 1 6.8122 -2.5048 1.1612 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381099404.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:42 Heat of formation + Delta-G solvation = 99.226618 kcal Electronic energy + Delta-G solvation = -19311.595484 eV Core-core repulsion = 16147.081207 eV Total energy + Delta-G solvation = -3164.514277 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.68760 -39.45124 -37.19902 -34.50246 -33.91671 -33.18794 -32.51884 -29.57573 -29.18244 -28.05522 -25.38758 -23.67425 -22.13755 -21.57857 -20.74366 -19.66946 -17.85599 -17.38393 -17.08289 -16.80380 -16.13002 -15.20484 -14.89007 -14.54569 -14.14000 -13.92514 -13.39458 -13.21161 -12.99386 -12.68677 -12.09690 -12.08296 -11.88252 -11.46400 -11.15236 -11.09830 -10.95874 -10.55020 -10.49730 -10.23465 -9.74928 -9.60168 -9.48277 -9.13721 -8.70952 -7.54836 -7.15737 -6.89274 -4.27704 1.31871 1.91344 2.04910 2.69274 3.03775 3.05852 3.11448 3.18473 3.54085 3.69420 3.88881 3.95690 4.50413 4.67507 4.72521 4.93318 4.94549 5.22955 5.61641 5.67805 5.93881 6.20782 6.40024 6.43186 6.76203 6.95667 6.99391 7.13149 7.27967 7.56401 7.67250 7.85659 8.01325 8.03618 8.24850 8.29305 8.53920 8.71427 8.83320 8.98863 10.00975 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.050276 B = 0.003414 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.790808 B = 8198.890988 C = 8575.581984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.150 5.150 3 N -0.295 5.295 4 C 0.032 3.968 5 C -0.033 4.033 6 C 0.588 3.412 7 O -0.521 6.521 8 N -0.628 5.628 9 C -0.027 4.027 10 C -0.097 4.097 11 C -0.172 4.172 12 C 0.114 3.886 13 C -0.463 4.463 14 H 0.083 0.917 15 C 0.088 3.912 16 N -0.768 5.768 17 Si 0.896 3.104 18 H -0.269 1.269 19 H -0.274 1.274 20 H -0.257 1.257 21 C -0.224 4.224 22 C -0.063 4.063 23 N -0.256 5.256 24 H 0.091 0.909 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.208 0.792 28 H 0.400 0.600 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.284 0.716 32 H 0.096 0.904 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.811 9.426 -0.267 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.053 5.053 3 N -0.135 5.135 4 C -0.151 4.151 5 C -0.196 4.196 6 C 0.371 3.629 7 O -0.396 6.396 8 N -0.270 5.270 9 C -0.118 4.118 10 C -0.118 4.118 11 C -0.191 4.191 12 C 0.111 3.889 13 C -0.491 4.491 14 H 0.101 0.899 15 C -0.134 4.134 16 N -0.390 5.390 17 Si 0.720 3.280 18 H -0.194 1.194 19 H -0.199 1.199 20 H -0.180 1.180 21 C -0.244 4.244 22 C -0.083 4.083 23 N -0.104 5.104 24 H 0.110 0.890 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.225 0.775 28 H 0.235 0.765 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.524 9.536 -0.255 16.550 hybrid contribution 0.795 -0.699 -0.426 1.140 sum -12.729 8.838 -0.680 15.511 Atomic orbital electron populations 1.22196 0.69966 1.06067 1.05180 1.48003 1.09101 0.99354 1.48801 1.73975 1.03960 1.15537 1.20063 1.24851 0.94136 0.93853 1.02265 1.23333 0.91304 0.94995 1.09968 1.16648 0.85768 0.81846 0.78592 1.90802 1.23368 1.75059 1.50356 1.42736 1.09599 1.04427 1.70250 1.17039 0.88782 0.95364 1.10662 1.20169 0.98063 0.94844 0.98676 1.20616 0.93754 1.00403 1.04367 1.17607 0.92256 0.91038 0.87977 1.19528 0.94986 0.93093 1.41494 0.89922 1.25956 0.96283 0.97945 0.93230 1.69945 1.27168 1.10763 1.31154 0.86501 0.81650 0.79344 0.80541 1.19450 1.19892 1.18048 1.20591 0.98042 0.99176 1.06545 1.20316 0.92685 0.98042 0.97274 1.74398 1.03229 1.15552 1.17235 0.89008 0.87668 0.87751 0.77501 0.76529 0.89173 0.87432 0.90559 0.88611 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.60 11.55 59.84 0.69 1.29 16 2 N -0.15 -1.74 4.34 -16.64 -0.07 -1.81 16 3 N -0.30 -3.77 12.01 30.90 0.37 -3.40 16 4 C 0.03 0.44 12.04 -16.82 -0.20 0.24 16 5 C -0.03 -0.51 7.21 -82.68 -0.60 -1.11 16 6 C 0.59 11.12 7.63 -12.37 -0.09 11.02 16 7 O -0.52 -11.35 14.57 5.31 0.08 -11.28 16 8 N -0.63 -12.00 5.29 -10.62 -0.06 -12.05 16 9 C -0.03 -0.61 6.25 -83.60 -0.52 -1.13 16 10 C -0.10 -2.26 9.90 -39.79 -0.39 -2.65 16 11 C -0.17 -4.39 8.74 -39.26 -0.34 -4.73 16 12 C 0.11 3.04 5.57 -106.80 -0.60 2.45 16 13 C -0.46 -12.18 8.94 -37.85 -0.34 -12.52 16 14 H 0.08 2.10 8.02 -52.49 -0.42 1.68 16 15 C 0.09 2.16 4.77 -17.33 -0.08 2.07 16 16 N -0.77 -19.26 11.78 55.55 0.65 -18.61 16 17 Si 0.90 18.10 29.66 -169.99 -5.04 13.06 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 20 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 21 C -0.22 -5.69 9.74 -39.26 -0.38 -6.07 16 22 C -0.06 -1.54 8.59 -39.78 -0.34 -1.88 16 23 N -0.26 -3.56 11.84 33.42 0.40 -3.17 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.21 2.35 8.06 -52.49 -0.42 1.93 16 28 H 0.40 6.58 8.59 -40.82 -0.35 6.23 16 29 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 30 H 0.11 2.78 6.53 -52.49 -0.34 2.44 16 31 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 32 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 33 H 0.10 2.46 6.45 -52.49 -0.34 2.12 16 LS Contribution 298.23 15.07 4.49 4.49 Total: -1.00 -31.35 298.23 -5.50 -36.85 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -3.12 Total: 8.93 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -3.20 Total: -13.02 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 1.29 Total: -39.04 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.04 Total: 13.06 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.35 -5.50 -36.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381099404.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.081 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds