Wall clock time and date at job start Mon Mar 30 2020 01:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.28523 * 124.44132 * 2 1 4 4 C 1.31129 * 109.06430 * 179.97438 * 3 2 1 5 5 C 1.40954 * 105.77317 * 0.26257 * 4 3 2 6 6 C 1.47754 * 127.23795 * 179.69551 * 5 4 3 7 7 O 1.21564 * 119.99902 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99886 * 180.02562 * 6 5 4 9 9 C 1.39142 * 120.00233 * 176.68983 * 8 6 5 10 10 C 1.39498 * 119.83730 * 217.55895 * 9 8 6 11 11 C 1.36365 * 120.16709 * 179.75751 * 10 9 8 12 12 C 1.40881 * 119.82698 * 0.51812 * 11 10 9 13 13 C 1.41140 * 120.15869 * 179.71801 * 12 11 10 14 14 H 1.07999 * 119.99737 * 157.93188 * 13 12 11 15 15 C 1.39915 * 120.00178 * 337.92673 * 13 12 11 16 16 N 1.30869 * 119.99896 * 327.60199 * 15 13 12 17 17 Si 1.86797 * 120.00006 * 147.59860 * 15 13 12 18 18 H 1.48499 * 109.47121 * 94.98777 * 17 15 13 19 19 H 1.48501 * 109.46961 * 214.99034 * 17 15 13 20 20 H 1.48502 * 109.46776 * 334.98838 * 17 15 13 21 21 C 1.40874 * 119.67607 * 359.74043 * 12 11 10 22 22 C 1.36363 * 119.83496 * 359.97438 * 21 12 11 23 23 N 1.28590 * 124.43976 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.47080 * 89.97672 * 1 2 3 25 25 H 1.08992 * 109.47469 * 209.97405 * 1 2 3 26 26 H 1.09000 * 109.47186 * 329.97875 * 1 2 3 27 27 H 1.08000 * 127.11453 * 180.02562 * 4 3 2 28 28 H 0.97006 * 120.00049 * 356.68856 * 8 6 5 29 29 H 1.08007 * 119.91926 * 359.97438 * 10 9 8 30 30 H 1.08000 * 120.08349 * 180.23241 * 11 10 9 31 31 H 0.96998 * 119.99948 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.08118 * 179.97438 * 21 12 11 33 33 H 1.07994 * 119.91830 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1918 1.0599 0.0000 4 6 3.4562 0.7122 0.0006 5 6 3.4659 -0.6973 -0.0053 6 6 4.6484 -1.5832 -0.0134 7 8 5.7661 -1.1051 -0.0151 8 7 4.4878 -2.9213 -0.0188 9 6 5.5991 -3.7551 -0.0960 10 6 5.5342 -4.9305 -0.8445 11 6 6.6208 -5.7501 -0.9287 12 6 7.8075 -5.4126 -0.2485 13 6 8.9344 -6.2588 -0.3261 14 1 9.9201 -5.8650 -0.1270 15 6 8.7746 -7.6079 -0.6607 16 7 7.6910 -8.2474 -0.3007 17 14 10.1078 -8.4963 -1.6213 18 1 11.0103 -9.2033 -0.6775 19 1 9.4828 -9.4811 -2.5404 20 1 10.8900 -7.5105 -2.4097 21 6 7.8636 -4.2267 0.5098 22 6 6.7708 -3.4140 0.5800 23 7 2.1922 -1.0605 0.0005 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3634 -0.8901 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 4.3129 1.3698 0.0011 28 1 3.5975 -3.3032 0.0311 29 1 4.6222 -5.1904 -1.3614 30 1 6.5703 -6.6579 -1.5116 31 1 7.5800 -9.1826 -0.5330 32 1 8.7698 -3.9618 1.0341 33 1 6.8122 -2.5048 1.1612 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381099404.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:41 Heat of formation + Delta-G solvation = 77.965577 kcal Electronic energy + Delta-G solvation = -19312.517432 eV Core-core repulsion = 16147.081207 eV Total energy + Delta-G solvation = -3165.436225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -44.71347 -41.08235 -39.01549 -36.24948 -34.99605 -34.68026 -33.70266 -31.47548 -30.96378 -28.99974 -27.03025 -25.07909 -23.37618 -23.07959 -22.51784 -21.22137 -19.34179 -19.07892 -18.03716 -17.93494 -17.81532 -17.00627 -16.11591 -15.90347 -15.73678 -15.52624 -14.93001 -14.48001 -13.98394 -13.86599 -13.83114 -13.63446 -13.36236 -13.04876 -12.81350 -12.69183 -12.34393 -12.14759 -11.94547 -11.59990 -11.55429 -11.29419 -10.94953 -10.54362 -10.46173 -9.48385 -9.03017 -8.73542 -6.23369 0.13290 0.78240 0.96939 1.14515 1.27059 1.39730 1.47606 1.58391 2.15001 2.20728 2.23015 2.65599 2.87756 3.69196 3.79027 4.00085 4.30375 4.32466 4.39026 4.46827 4.49900 4.66828 4.89408 4.92127 5.10419 5.14007 5.26275 5.41409 5.52789 5.64225 5.85161 6.00076 6.07438 6.34088 6.57318 6.62915 6.89030 6.96216 7.02541 7.25224 8.20378 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.050276 B = 0.003414 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.790808 B = 8198.890988 C = 8575.581984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.133 5.133 3 N -0.295 5.295 4 C 0.031 3.969 5 C -0.061 4.061 6 C 0.594 3.406 7 O -0.555 6.555 8 N -0.625 5.625 9 C -0.016 4.016 10 C -0.096 4.096 11 C -0.189 4.189 12 C 0.086 3.914 13 C -0.501 4.501 14 H 0.077 0.923 15 C 0.052 3.948 16 N -0.796 5.796 17 Si 0.972 3.028 18 H -0.259 1.259 19 H -0.261 1.261 20 H -0.261 1.261 21 C -0.243 4.243 22 C -0.072 4.072 23 N -0.253 5.253 24 H 0.113 0.887 25 H 0.123 0.877 26 H 0.127 0.873 27 H 0.223 0.777 28 H 0.415 0.585 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.295 0.705 32 H 0.096 0.904 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.734 9.738 -0.912 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.038 5.038 3 N -0.136 5.136 4 C -0.152 4.152 5 C -0.222 4.222 6 C 0.379 3.621 7 O -0.432 6.432 8 N -0.269 5.269 9 C -0.109 4.109 10 C -0.116 4.116 11 C -0.209 4.209 12 C 0.083 3.917 13 C -0.529 4.529 14 H 0.095 0.905 15 C -0.168 4.168 16 N -0.419 5.419 17 Si 0.792 3.208 18 H -0.184 1.184 19 H -0.185 1.185 20 H -0.185 1.185 21 C -0.262 4.262 22 C -0.092 4.092 23 N -0.104 5.104 24 H 0.132 0.868 25 H 0.142 0.858 26 H 0.146 0.854 27 H 0.239 0.761 28 H 0.252 0.748 29 H 0.139 0.861 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.484 9.857 -0.887 18.377 hybrid contribution 1.139 -0.659 -0.174 1.328 sum -14.344 9.198 -1.061 17.073 Atomic orbital electron populations 1.22829 0.66630 1.08212 1.07305 1.48674 1.10750 0.98474 1.45882 1.74014 1.03593 1.15769 1.20204 1.25126 0.95090 0.93236 1.01704 1.22762 0.90927 0.95142 1.13339 1.16964 0.86403 0.81726 0.76977 1.90779 1.25168 1.75636 1.51571 1.42624 1.09221 1.04424 1.70622 1.17099 0.89344 0.95443 1.09049 1.20416 0.98527 0.94363 0.98270 1.20638 0.94435 1.00846 1.05004 1.17921 0.93167 0.91774 0.88801 1.19739 0.94748 0.94441 1.43933 0.90457 1.26745 0.98770 0.97992 0.93293 1.69939 1.28830 1.11670 1.31491 0.85358 0.78496 0.77949 0.78967 1.18389 1.18544 1.18497 1.20727 0.98741 0.99617 1.07165 1.20430 0.93143 0.97946 0.97700 1.74347 1.02700 1.16441 1.16915 0.86827 0.85845 0.85438 0.76093 0.74816 0.86131 0.88218 0.89414 0.88570 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.55 127.77 1.48 2.13 16 2 N -0.13 -2.68 4.34 -206.55 -0.90 -3.58 16 3 N -0.30 -6.79 12.01 -56.15 -0.67 -7.46 16 4 C 0.03 0.79 12.04 85.46 1.03 1.82 16 5 C -0.06 -1.82 7.21 42.23 0.30 -1.52 16 6 C 0.59 22.16 7.63 86.76 0.66 22.82 16 7 O -0.55 -24.32 14.57 -3.92 -0.06 -24.38 16 8 N -0.63 -23.38 5.29 -305.78 -1.62 -25.00 16 9 C -0.02 -0.75 6.25 38.59 0.24 -0.51 16 10 C -0.10 -4.42 9.90 22.14 0.22 -4.20 16 11 C -0.19 -9.88 8.74 22.48 0.20 -9.68 16 12 C 0.09 4.75 5.57 -21.27 -0.12 4.63 16 13 C -0.50 -27.23 8.94 23.39 0.21 -27.02 16 14 H 0.08 4.11 8.02 -2.91 -0.02 4.08 16 15 C 0.05 2.57 4.77 85.24 0.41 2.98 16 16 N -0.80 -40.29 11.78 21.82 0.26 -40.03 16 17 Si 0.97 37.17 29.66 68.60 2.03 39.21 16 18 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 19 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 21 C -0.24 -12.82 9.74 22.48 0.22 -12.60 16 22 C -0.07 -3.58 8.59 22.14 0.19 -3.39 16 23 N -0.25 -6.48 11.84 -48.17 -0.57 -7.05 16 24 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.12 0.53 8.14 -2.39 -0.02 0.52 16 26 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.22 4.76 8.06 -2.91 -0.02 4.74 16 28 H 0.41 13.01 8.59 -92.70 -0.80 12.21 16 29 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 30 H 0.10 5.26 6.53 -2.91 -0.02 5.24 16 31 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 32 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 33 H 0.11 5.12 6.45 -2.91 -0.02 5.10 16 Total: -1.00 -68.74 298.23 3.88 -64.86 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.37 Total: 27.97 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: 5.04 Total: -24.54 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.50 Total: -83.11 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.06 Total: -24.38 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.21 kcal Total: -68.74 3.88 -64.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381099404.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.827 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds