Wall clock time and date at job start Mon Mar 30 2020 00:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99979 * 2 1 4 4 H 1.48499 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47070 * 299.99928 * 3 2 1 6 6 H 1.48500 * 109.47126 * 60.00262 * 3 2 1 7 7 C 1.37879 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00259 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47489 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00203 * 179.97438 * 10 9 7 12 12 O 1.21514 * 120.00298 * 359.97438 * 11 10 9 13 13 C 1.48157 * 120.00202 * 180.02562 * 11 10 9 14 14 C 1.39951 * 120.89196 * 359.97438 * 13 11 10 15 15 C 1.38047 * 119.13689 * 180.02562 * 14 13 11 16 16 N 1.31839 * 120.98525 * 359.72333 * 15 14 13 17 17 C 1.32243 * 121.96980 * 0.56788 * 16 15 14 18 18 N 1.39830 * 119.62383 * 179.71259 * 17 16 15 19 19 C 1.35847 * 126.10455 * 359.72227 * 18 17 16 20 20 C 1.35275 * 107.61067 * 180.02562 * 19 18 17 21 21 C 1.39955 * 107.97526 * 0.02562 * 20 19 18 22 22 N 1.30818 * 108.36696 * 0.26687 * 21 20 19 23 23 C 1.38911 * 120.74989 * 359.43406 * 17 16 15 24 24 H 0.97002 * 120.00218 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47069 * 59.99790 * 9 7 2 26 26 H 1.09004 * 109.46843 * 299.99872 * 9 7 2 27 27 H 0.97004 * 119.99359 * 0.02562 * 10 9 7 28 28 H 1.07998 * 120.42588 * 0.02562 * 14 13 11 29 29 H 1.08005 * 119.50756 * 179.97438 * 15 14 13 30 30 H 1.07995 * 126.19028 * 0.03227 * 19 18 17 31 31 H 1.08004 * 126.01362 * 179.97438 * 20 19 18 32 32 H 1.08002 * 125.81535 * 179.97438 * 21 20 19 33 33 H 1.07996 * 120.53098 * 180.25697 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5591 -5.1054 0.0009 13 6 2.7165 -6.0095 0.0006 14 6 4.0962 -5.7752 0.0000 15 6 4.9607 -6.8515 0.0001 16 7 4.5046 -8.0885 0.0060 17 6 3.2098 -8.3573 0.0011 18 7 2.7801 -9.6879 0.0017 19 6 3.5786 -10.7870 0.0018 20 6 2.7760 -11.8759 0.0019 21 6 1.4481 -11.4339 0.0014 22 7 1.4492 -10.1257 -0.0049 23 6 2.2717 -7.3328 0.0011 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.1567 -3.4354 -0.0002 28 1 4.4796 -4.7656 -0.0004 29 1 6.0267 -6.6777 -0.0008 30 1 4.6585 -10.7906 0.0018 31 1 3.1026 -12.9054 0.0016 32 1 0.5719 -12.0652 0.0009 33 1 1.2151 -7.5564 0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427608694.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:17 Heat of formation + Delta-G solvation = 87.277229 kcal Electronic energy + Delta-G solvation = -19107.713614 eV Core-core repulsion = 15942.681172 eV Total energy + Delta-G solvation = -3165.032441 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.72188 -40.32052 -38.56803 -34.47549 -33.84841 -32.77558 -32.28911 -30.56213 -29.53810 -27.56827 -24.88510 -24.13325 -22.68377 -21.63957 -20.95056 -19.96836 -18.73059 -17.34071 -16.44325 -16.19130 -15.73477 -15.50491 -15.11251 -14.94115 -14.60517 -14.42215 -14.07852 -13.73630 -13.62243 -13.05287 -12.94443 -12.27534 -11.98887 -11.97136 -11.03546 -11.02106 -10.98432 -10.64386 -10.42189 -10.14517 -9.97398 -9.49166 -9.39667 -9.37077 -8.84261 -8.47860 -8.06473 -6.24124 -4.31977 0.40370 0.74519 1.83879 1.91818 2.56026 3.17895 3.19280 3.26145 3.28924 3.62684 3.86886 4.12195 4.26786 4.34956 4.63419 4.72706 4.84210 4.90999 5.06943 5.12458 5.26164 5.42645 5.54691 5.68151 5.73035 5.95523 6.18732 6.31510 6.86548 7.16142 7.16854 7.20909 7.39472 7.54437 7.65876 7.86403 8.40723 8.62939 8.86298 9.34597 10.86053 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.043525 B = 0.003312 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.149483 B = 8453.291460 C = 9081.294053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.248 3.752 10 N -0.697 5.697 11 C 0.537 3.463 12 O -0.537 6.537 13 C -0.050 4.050 14 C -0.156 4.156 15 C 0.129 3.871 16 N -0.499 5.499 17 C 0.360 3.640 18 N -0.324 5.324 19 C 0.078 3.922 20 C -0.268 4.268 21 C 0.061 3.939 22 N -0.279 5.279 23 C -0.110 4.110 24 H 0.267 0.733 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.392 0.608 28 H 0.150 0.850 29 H 0.173 0.827 30 H 0.182 0.818 31 H 0.156 0.844 32 H 0.193 0.807 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.821 -18.897 -0.004 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.127 3.873 10 N -0.345 5.345 11 C 0.321 3.679 12 O -0.415 6.415 13 C -0.062 4.062 14 C -0.177 4.177 15 C -0.028 4.028 16 N -0.213 5.213 17 C 0.134 3.866 18 N -0.102 5.102 19 C -0.063 4.063 20 C -0.297 4.297 21 C -0.128 4.128 22 N -0.097 5.097 23 C -0.133 4.133 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.226 0.774 28 H 0.168 0.832 29 H 0.190 0.810 30 H 0.199 0.801 31 H 0.173 0.827 32 H 0.210 0.790 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.675 -18.421 -0.003 20.808 hybrid contribution 0.860 0.880 0.001 1.230 sum 10.536 -17.542 -0.002 20.463 Atomic orbital electron populations 1.69977 1.06136 1.27380 1.48574 1.24954 0.94934 0.99532 0.94545 0.86336 0.79793 0.82811 0.77827 1.19583 1.20737 1.20733 1.21215 0.93314 0.90245 1.53657 0.91725 1.19240 0.88213 0.81600 0.98202 1.46434 1.11527 1.05672 1.70853 1.18049 0.87718 0.83127 0.79047 1.90773 1.15774 1.84617 1.50356 1.20657 0.94217 0.94244 0.97089 1.22456 0.92816 1.01787 1.00656 1.22445 1.00511 0.85197 0.94670 1.66682 1.13782 1.25270 1.15614 1.17523 0.89206 0.81696 0.98220 1.45792 1.05095 1.03054 1.56274 1.22910 0.98754 0.85451 0.99219 1.21653 0.92364 0.99698 1.15964 1.24190 0.98717 0.91884 0.98011 1.77596 0.94691 1.13369 1.24050 1.21722 1.02142 0.90261 0.99222 0.92362 0.95030 0.95042 0.77411 0.83211 0.80967 0.80067 0.82675 0.79006 0.82198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.52 13.29 55.43 0.74 -24.78 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.55 -14.33 9.28 -34.44 -0.32 -14.65 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.37 5.43 -5.20 -0.03 6.34 16 10 N -0.70 -14.18 5.51 -62.33 -0.34 -14.52 16 11 C 0.54 10.83 7.80 -12.19 -0.10 10.73 16 12 O -0.54 -13.01 16.44 5.35 0.09 -12.92 16 13 C -0.05 -0.80 5.91 -104.67 -0.62 -1.42 16 14 C -0.16 -1.85 9.61 -39.01 -0.37 -2.23 16 15 C 0.13 1.35 11.17 -17.62 -0.20 1.15 16 16 N -0.50 -6.31 9.83 -12.34 -0.12 -6.43 16 17 C 0.36 5.23 7.55 -154.42 -1.17 4.06 16 18 N -0.32 -4.48 3.81 -12.12 -0.05 -4.53 16 19 C 0.08 0.84 11.10 -16.83 -0.19 0.65 16 20 C -0.27 -2.43 10.80 -39.99 -0.43 -2.86 16 21 C 0.06 0.62 12.02 -17.34 -0.21 0.41 16 22 N -0.28 -3.91 11.83 30.64 0.36 -3.55 16 23 C -0.11 -1.77 9.27 -38.82 -0.36 -2.13 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.39 6.59 6.46 -40.82 -0.26 6.33 16 28 H 0.15 1.42 6.53 -52.49 -0.34 1.08 16 29 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 30 H 0.18 1.52 8.05 -52.49 -0.42 1.09 16 31 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.16 2.80 7.37 -52.49 -0.39 2.41 16 LS Contribution 301.71 15.07 4.55 4.55 Total: -1.00 -33.61 301.71 -6.94 -40.55 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.06 Total: 4.62 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -4.08 Total: 1.72 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.59 Total: -53.82 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.61 -6.94 -40.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427608694.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.829 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds