Wall clock time and date at job start Mon Mar 30 2020 00:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99979 * 2 1 4 4 H 1.48499 * 109.46996 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47070 * 299.99928 * 3 2 1 6 6 H 1.48500 * 109.47126 * 60.00262 * 3 2 1 7 7 C 1.37879 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99932 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00259 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47489 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00203 * 179.97438 * 10 9 7 12 12 O 1.21514 * 120.00298 * 359.97438 * 11 10 9 13 13 C 1.48157 * 120.00202 * 180.02562 * 11 10 9 14 14 C 1.39951 * 120.89196 * 359.97438 * 13 11 10 15 15 C 1.38047 * 119.13689 * 180.02562 * 14 13 11 16 16 N 1.31839 * 120.98525 * 359.72333 * 15 14 13 17 17 C 1.32243 * 121.96980 * 0.56788 * 16 15 14 18 18 N 1.39830 * 119.62383 * 179.71259 * 17 16 15 19 19 C 1.35847 * 126.10455 * 359.72227 * 18 17 16 20 20 C 1.35275 * 107.61067 * 180.02562 * 19 18 17 21 21 C 1.39955 * 107.97526 * 0.02562 * 20 19 18 22 22 N 1.30818 * 108.36696 * 0.26687 * 21 20 19 23 23 C 1.38911 * 120.74989 * 359.43406 * 17 16 15 24 24 H 0.97002 * 120.00218 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47069 * 59.99790 * 9 7 2 26 26 H 1.09004 * 109.46843 * 299.99872 * 9 7 2 27 27 H 0.97004 * 119.99359 * 0.02562 * 10 9 7 28 28 H 1.07998 * 120.42588 * 0.02562 * 14 13 11 29 29 H 1.08005 * 119.50756 * 179.97438 * 15 14 13 30 30 H 1.07995 * 126.19028 * 0.03227 * 19 18 17 31 31 H 1.08004 * 126.01362 * 179.97438 * 20 19 18 32 32 H 1.08002 * 125.81535 * 179.97438 * 21 20 19 33 33 H 1.07996 * 120.53098 * 180.25697 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8833 0.0000 12 8 0.5591 -5.1054 0.0009 13 6 2.7165 -6.0095 0.0006 14 6 4.0962 -5.7752 0.0000 15 6 4.9607 -6.8515 0.0001 16 7 4.5046 -8.0885 0.0060 17 6 3.2098 -8.3573 0.0011 18 7 2.7801 -9.6879 0.0017 19 6 3.5786 -10.7870 0.0018 20 6 2.7760 -11.8759 0.0019 21 6 1.4481 -11.4339 0.0014 22 7 1.4492 -10.1257 -0.0049 23 6 2.2717 -7.3328 0.0011 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 3.1567 -3.4354 -0.0002 28 1 4.4796 -4.7656 -0.0004 29 1 6.0267 -6.6777 -0.0008 30 1 4.6585 -10.7906 0.0018 31 1 3.1026 -12.9054 0.0016 32 1 0.5719 -12.0652 0.0009 33 1 1.2151 -7.5564 0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427608694.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:16 Heat of formation + Delta-G solvation = 63.470501 kcal Electronic energy + Delta-G solvation = -19108.745951 eV Core-core repulsion = 15942.681172 eV Total energy + Delta-G solvation = -3166.064778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.62234 -41.47801 -40.08741 -36.35339 -35.00020 -34.31175 -33.72590 -31.45604 -30.47616 -29.48638 -26.28612 -25.18717 -24.30496 -22.86139 -21.79948 -21.39035 -20.00363 -18.64666 -18.01166 -17.52110 -16.84034 -16.74860 -16.59254 -16.30844 -16.24170 -15.66855 -15.12545 -14.80802 -14.70567 -14.42416 -14.10802 -14.01055 -13.70267 -13.20883 -12.92217 -12.77047 -12.23498 -11.85194 -11.60115 -11.50326 -11.44770 -11.15940 -10.85097 -10.84779 -10.26570 -9.99406 -9.37869 -8.30699 -6.47792 -0.64895 -0.34881 0.96130 1.03683 1.44704 1.45716 1.59122 1.77740 1.83188 2.09225 2.41052 2.66646 3.05188 3.21150 3.35803 3.49862 3.75961 3.83839 4.05170 4.06966 4.41416 4.56112 4.64899 4.72238 4.89006 5.02895 5.06154 5.17316 5.24196 5.36155 5.57314 5.59644 5.79181 5.99463 6.29355 6.59323 6.69442 6.73253 7.14504 7.29541 8.81862 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.043525 B = 0.003312 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.149483 B = 8453.291460 C = 9081.294053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.248 1.248 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.555 4.555 8 H 0.091 0.909 9 C 0.263 3.737 10 N -0.686 5.686 11 C 0.537 3.463 12 O -0.589 6.589 13 C -0.066 4.066 14 C -0.142 4.142 15 C 0.149 3.851 16 N -0.494 5.494 17 C 0.357 3.643 18 N -0.345 5.345 19 C 0.066 3.934 20 C -0.256 4.256 21 C 0.065 3.935 22 N -0.336 5.336 23 C -0.134 4.134 24 H 0.269 0.731 25 H -0.007 1.007 26 H -0.008 1.008 27 H 0.413 0.587 28 H 0.180 0.820 29 H 0.228 0.772 30 H 0.204 0.796 31 H 0.192 0.808 32 H 0.225 0.775 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.023 -19.643 -0.003 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.171 1.171 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.109 0.891 9 C 0.141 3.859 10 N -0.336 5.336 11 C 0.324 3.676 12 O -0.471 6.471 13 C -0.077 4.077 14 C -0.163 4.163 15 C -0.008 4.008 16 N -0.208 5.208 17 C 0.130 3.870 18 N -0.123 5.123 19 C -0.074 4.074 20 C -0.284 4.284 21 C -0.123 4.123 22 N -0.155 5.155 23 C -0.158 4.158 24 H 0.078 0.922 25 H 0.011 0.989 26 H 0.010 0.990 27 H 0.250 0.750 28 H 0.197 0.803 29 H 0.244 0.756 30 H 0.221 0.779 31 H 0.209 0.791 32 H 0.242 0.758 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 13.928 -19.223 -0.002 23.738 hybrid contribution -0.440 0.933 0.001 1.031 sum 13.488 -18.290 -0.001 22.725 Atomic orbital electron populations 1.70145 1.08390 1.28609 1.49881 1.26087 0.95759 1.04015 0.93792 0.85082 0.79300 0.77128 0.77538 1.17136 1.20654 1.20644 1.21625 0.94545 0.90070 1.52986 0.89148 1.18696 0.88645 0.83922 0.94631 1.46056 1.11783 1.04705 1.71080 1.18711 0.87877 0.83916 0.77133 1.90736 1.18532 1.85450 1.52393 1.20200 0.95110 0.92128 1.00272 1.22778 0.90624 1.03971 0.98899 1.23367 1.02520 0.83696 0.91267 1.66893 1.12281 1.26344 1.15291 1.17568 0.89482 0.81974 0.97937 1.45911 1.05475 1.03306 1.57621 1.23487 0.99877 0.84980 0.99015 1.22125 0.91359 1.00973 1.13947 1.24906 1.00669 0.91075 0.95677 1.77588 0.95792 1.15524 1.26558 1.21492 1.01287 0.91243 1.01733 0.92218 0.98948 0.98963 0.74950 0.80280 0.75569 0.77879 0.79067 0.75844 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.99 41.13 29.54 68.60 2.03 43.16 16 4 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 5 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.55 -29.15 9.28 25.60 0.24 -28.91 16 8 H 0.09 4.18 7.60 -2.91 -0.02 4.16 16 9 C 0.26 14.23 5.43 85.63 0.46 14.69 16 10 N -0.69 -28.56 5.51 -469.42 -2.58 -31.14 16 11 C 0.54 22.78 7.80 86.88 0.68 23.46 16 12 O -0.59 -31.03 16.44 -3.76 -0.06 -31.09 16 13 C -0.07 -2.11 5.91 -19.90 -0.12 -2.23 16 14 C -0.14 -2.97 9.61 22.64 0.22 -2.76 16 15 C 0.15 2.48 11.17 84.65 0.95 3.43 16 16 N -0.49 -11.17 9.83 -192.95 -1.90 -13.07 16 17 C 0.36 10.29 7.55 132.77 1.00 11.29 16 18 N -0.34 -9.48 3.81 -192.27 -0.73 -10.22 16 19 C 0.07 1.30 11.10 83.39 0.93 2.23 16 20 C -0.26 -4.01 10.80 22.00 0.24 -3.77 16 21 C 0.06 1.26 12.02 85.26 1.02 2.28 16 22 N -0.34 -9.71 11.83 -56.98 -0.67 -10.38 16 23 C -0.13 -4.53 9.27 22.76 0.21 -4.31 16 24 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 27 H 0.41 13.32 6.46 -92.71 -0.60 12.72 16 28 H 0.18 2.64 6.53 -2.91 -0.02 2.62 16 29 H 0.23 1.34 8.06 -2.91 -0.02 1.31 16 30 H 0.20 2.83 8.05 -2.91 -0.02 2.81 16 31 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 32 H 0.23 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.13 5.08 7.37 -2.91 -0.02 5.06 16 Total: -1.00 -79.84 301.71 3.21 -76.64 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.56 Total: 15.36 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 6.29 Total: 16.02 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -5.60 Total: -120.09 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.06 Total: -31.09 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -79.84 3.21 -76.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427608694.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.108 kcal (2) G-P(sol) polarization free energy of solvation -79.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds