Wall clock time and date at job start Mon Mar 30 2020 00:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99920 * 2 1 4 4 H 1.48499 * 109.47100 * 269.99985 * 3 2 1 5 5 H 1.48502 * 109.46987 * 30.00043 * 3 2 1 6 6 H 1.48504 * 109.47480 * 149.99908 * 3 2 1 7 7 C 1.37873 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00482 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99893 * 359.97438 * 7 2 1 10 10 N 1.46491 * 109.47077 * 180.02562 * 9 7 2 11 11 C 1.34781 * 120.00082 * 180.02562 * 10 9 7 12 12 O 1.21515 * 119.99770 * 359.97438 * 11 10 9 13 13 C 1.48172 * 120.00511 * 179.97438 * 11 10 9 14 14 C 1.39128 * 119.69798 * 179.97438 * 13 11 10 15 15 C 1.39280 * 118.97672 * 179.97438 * 14 13 11 16 16 N 1.39941 * 120.82347 * 179.97438 * 15 14 13 17 17 C 1.35817 * 126.10354 * 179.71909 * 16 15 14 18 18 C 1.35295 * 107.61860 * 179.83987 * 17 16 15 19 19 C 1.39951 * 107.96533 * 0.41924 * 18 17 16 20 20 N 1.30825 * 108.36409 * 359.73957 * 19 18 17 21 21 C 1.39286 * 118.35879 * 0.02562 * 15 14 13 22 22 C 1.38348 * 119.27118 * 0.02562 * 21 15 14 23 23 N 1.31594 * 120.97758 * 359.97438 * 22 21 15 24 24 H 0.97002 * 119.99997 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47106 * 59.99730 * 9 7 2 26 26 H 1.09002 * 109.46611 * 300.00385 * 9 7 2 27 27 H 0.97002 * 120.00490 * 359.97438 * 10 9 7 28 28 H 1.08006 * 120.50737 * 359.97438 * 14 13 11 29 29 H 1.08003 * 126.19621 * 0.02562 * 17 16 15 30 30 H 1.08002 * 126.01867 * 180.15642 * 18 17 16 31 31 H 1.08001 * 125.81822 * 179.71507 * 19 18 17 32 32 H 1.07993 * 120.36190 * 180.02562 * 21 15 14 33 33 H 1.08001 * 119.50709 * 180.26541 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5593 -5.1054 -0.0011 13 6 2.7169 -6.0095 -0.0016 14 6 2.2462 -7.3188 -0.0016 15 6 3.1646 -8.3660 -0.0027 16 7 2.7338 -9.6974 -0.0022 17 6 3.5315 -10.7966 -0.0085 18 6 2.7285 -11.8854 -0.0019 19 6 1.4009 -11.4427 -0.0009 20 7 1.4027 -10.1344 -0.0011 21 6 4.5223 -8.0552 -0.0032 22 6 4.9125 -6.7279 -0.0021 23 7 4.0210 -5.7599 -0.0011 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8897 27 1 3.1569 -3.4353 -0.0009 28 1 1.1851 -7.5200 -0.0008 29 1 4.6115 -10.8009 -0.0145 30 1 3.0545 -12.9151 -0.0020 31 1 0.5242 -12.0735 -0.0005 32 1 5.2623 -8.8418 -0.0045 33 1 5.9642 -6.4826 -0.0068 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427615195.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:19 Heat of formation + Delta-G solvation = 57.816563 kcal Electronic energy + Delta-G solvation = -19102.504602 eV Core-core repulsion = 15936.194650 eV Total energy + Delta-G solvation = -3166.309952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.63843 -41.47988 -39.94287 -36.32039 -35.51734 -34.36795 -32.79017 -31.47717 -30.81009 -29.45259 -26.23888 -25.16953 -24.33815 -22.78410 -21.82955 -21.35365 -19.96949 -18.68603 -17.88456 -17.40697 -17.00435 -16.66599 -16.60641 -16.26249 -16.21199 -15.74506 -15.09328 -14.78432 -14.77844 -14.50134 -14.06415 -13.91494 -13.70644 -13.16859 -12.96081 -12.72272 -12.25199 -12.08234 -11.81213 -11.52989 -11.39967 -10.83256 -10.75986 -10.49869 -10.37817 -9.92630 -9.50787 -8.30736 -6.47914 -0.64164 -0.29627 1.05078 1.18386 1.42929 1.46119 1.57613 1.69859 1.82085 2.14477 2.41326 2.72597 3.04062 3.11772 3.29777 3.53203 3.75255 3.88700 4.02772 4.12419 4.36106 4.53834 4.59433 4.70282 4.85806 5.02121 5.02990 5.16584 5.31740 5.39053 5.59265 5.60609 5.79113 6.00364 6.51713 6.54304 6.61018 6.82996 7.15577 7.30258 8.81737 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.043636 B = 0.003317 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.519555 B = 8438.619852 C = 9064.994064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.989 3.011 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.255 1.255 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.263 3.737 10 N -0.680 5.680 11 C 0.545 3.455 12 O -0.589 6.589 13 C 0.099 3.901 14 C -0.138 4.138 15 C 0.194 3.806 16 N -0.347 5.347 17 C 0.055 3.945 18 C -0.254 4.254 19 C 0.057 3.943 20 N -0.348 5.348 21 C -0.152 4.152 22 C 0.135 3.865 23 N -0.483 5.483 24 H 0.270 0.730 25 H -0.006 1.006 26 H -0.006 1.006 27 H 0.415 0.585 28 H 0.128 0.872 29 H 0.227 0.773 30 H 0.192 0.808 31 H 0.216 0.784 32 H 0.202 0.798 33 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.221 -24.328 -0.026 29.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.811 3.189 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.141 3.859 10 N -0.329 5.329 11 C 0.330 3.670 12 O -0.470 6.470 13 C -0.038 4.038 14 C -0.162 4.162 15 C 0.093 3.907 16 N -0.125 5.125 17 C -0.084 4.084 18 C -0.282 4.282 19 C -0.130 4.130 20 N -0.166 5.166 21 C -0.174 4.174 22 C -0.025 4.025 23 N -0.196 5.196 24 H 0.079 0.921 25 H 0.012 0.988 26 H 0.012 0.988 27 H 0.252 0.748 28 H 0.146 0.854 29 H 0.244 0.756 30 H 0.209 0.791 31 H 0.233 0.767 32 H 0.219 0.781 33 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 14.763 -22.338 -0.016 26.775 hybrid contribution -0.263 -0.530 -0.014 0.592 sum 14.500 -22.867 -0.030 27.077 Atomic orbital electron populations 1.70139 1.08291 1.28715 1.49754 1.26094 0.95832 1.03959 0.93642 0.85103 0.78472 0.76617 0.78706 1.19444 1.20742 1.17867 1.21575 0.94319 0.90337 1.53299 0.89853 1.18716 0.88609 0.83982 0.94624 1.46091 1.12001 1.04814 1.69947 1.18518 0.87368 0.83785 0.77293 1.90723 1.17709 1.85347 1.53269 1.20601 0.91159 0.91381 1.00667 1.21587 1.01600 0.91447 1.01560 1.17847 0.93942 0.80883 0.98044 1.46072 1.05286 1.03784 1.57327 1.23698 1.00422 0.84458 0.99807 1.22156 0.91214 1.01309 1.13508 1.24843 1.00894 0.91164 0.96135 1.77606 0.97278 1.15553 1.26140 1.22561 0.92487 1.00752 1.01631 1.23610 1.00976 0.86483 0.91391 1.67602 1.00542 1.39310 1.12113 0.92110 0.98832 0.98832 0.74827 0.85407 0.75628 0.79114 0.76718 0.78122 0.76019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.99 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.56 -31.72 9.28 25.60 0.24 -31.48 16 8 H 0.08 4.33 7.60 -2.91 -0.02 4.31 16 9 C 0.26 15.33 5.43 85.64 0.46 15.80 16 10 N -0.68 -32.81 5.54 -469.39 -2.60 -35.41 16 11 C 0.55 25.80 7.81 86.88 0.68 26.48 16 12 O -0.59 -32.62 16.32 -3.76 -0.06 -32.69 16 13 C 0.10 3.59 6.75 41.86 0.28 3.88 16 14 C -0.14 -4.68 9.26 22.73 0.21 -4.47 16 15 C 0.19 4.70 6.73 38.35 0.26 4.96 16 16 N -0.35 -7.81 3.81 -186.86 -0.71 -8.52 16 17 C 0.06 0.68 10.86 83.40 0.91 1.59 16 18 C -0.25 -2.96 10.80 22.01 0.24 -2.72 16 19 C 0.06 1.00 12.02 85.26 1.02 2.03 16 20 N -0.35 -9.37 11.97 -56.98 -0.68 -10.05 16 21 C -0.15 -2.15 9.54 22.55 0.22 -1.94 16 22 C 0.14 2.27 11.17 84.75 0.95 3.21 16 23 N -0.48 -13.89 9.54 -185.13 -1.77 -15.65 16 24 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 27 H 0.41 17.60 7.65 -92.71 -0.71 16.89 16 28 H 0.13 5.09 7.38 -2.91 -0.02 5.07 16 29 H 0.23 0.35 7.13 -2.91 -0.02 0.33 16 30 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 31 H 0.22 2.26 8.06 -2.91 -0.02 2.24 16 32 H 0.20 0.53 6.88 -2.91 -0.02 0.51 16 33 H 0.22 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -85.36 301.81 2.86 -82.49 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.45 Total: 13.55 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 5.92 Total: 18.04 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -5.47 Total: -126.76 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.06 Total: -32.69 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -85.36 2.86 -82.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427615195.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.311 kcal (2) G-P(sol) polarization free energy of solvation -85.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds