Wall clock time and date at job start Mon Mar 30 2020 00:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00223 * 2 1 4 4 H 1.48496 * 109.47021 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46748 * 300.00293 * 3 2 1 6 6 H 1.48497 * 109.46734 * 59.99783 * 3 2 1 7 7 C 1.37879 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99849 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47124 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99911 * 179.97438 * 10 9 7 12 12 O 1.21510 * 120.00148 * 0.02562 * 11 10 9 13 13 C 1.48164 * 119.99932 * 179.97438 * 11 10 9 14 14 C 1.39235 * 119.68758 * 180.02562 * 13 11 10 15 15 C 1.38711 * 119.19246 * 179.97438 * 14 13 11 16 16 C 1.38414 * 118.55299 * 359.75053 * 15 14 13 17 17 C 1.39260 * 119.29939 * 0.47928 * 16 15 14 18 18 N 1.39823 * 119.61828 * 179.79256 * 17 16 15 19 19 C 1.35842 * 126.10103 * 179.73994 * 18 17 16 20 20 C 1.35283 * 107.60899 * 179.68910 * 19 18 17 21 21 C 1.39956 * 107.96980 * 0.43199 * 20 19 18 22 22 N 1.30821 * 108.36748 * 359.55816 * 21 20 19 23 23 N 1.31980 * 120.76620 * 359.50568 * 17 16 15 24 24 H 0.96998 * 120.00056 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47476 * 59.99237 * 9 7 2 26 26 H 1.09001 * 109.47079 * 299.99644 * 9 7 2 27 27 H 0.97003 * 120.00317 * 359.97438 * 10 9 7 28 28 H 1.08002 * 120.39929 * 0.02646 * 14 13 11 29 29 H 1.08000 * 120.72169 * 180.02562 * 15 14 13 30 30 H 1.07995 * 120.34964 * 180.23786 * 16 15 14 31 31 H 1.07998 * 126.19907 * 359.96324 * 19 18 17 32 32 H 1.08003 * 126.01648 * 180.29148 * 20 19 18 33 33 H 1.08002 * 125.81889 * 179.83042 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5590 -5.1054 0.0011 13 6 2.7165 -6.0096 0.0005 14 6 2.2452 -7.3197 0.0005 15 6 3.1556 -8.3662 -0.0006 16 6 4.5071 -8.0673 -0.0069 17 6 4.9103 -6.7344 -0.0019 18 7 6.2739 -6.4249 -0.0038 19 6 6.8115 -5.1774 -0.0044 20 6 8.1576 -5.3118 0.0006 21 6 8.4550 -6.6794 -0.0057 22 7 7.3293 -7.3461 -0.0045 23 7 4.0203 -5.7598 -0.0009 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 3.1567 -3.4355 0.0002 28 1 1.1836 -7.5187 0.0005 29 1 2.8173 -9.3919 -0.0010 30 1 5.2411 -8.8595 -0.0118 31 1 6.2635 -4.2467 -0.0041 32 1 8.8763 -4.5057 0.0059 33 1 9.4450 -7.1110 -0.0064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427623236.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:15 Heat of formation + Delta-G solvation = 86.778040 kcal Electronic energy + Delta-G solvation = -19379.643290 eV Core-core repulsion = 16214.589202 eV Total energy + Delta-G solvation = -3165.054088 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.69100 -40.30778 -38.38737 -34.40368 -33.72552 -32.96274 -32.14719 -30.49934 -29.62240 -27.46464 -24.79882 -24.20505 -22.65913 -21.22530 -21.06005 -19.92441 -18.61344 -17.60975 -16.35877 -16.12889 -15.74534 -15.64808 -15.00961 -14.86606 -14.64723 -14.26844 -13.90287 -13.49881 -13.41993 -12.99567 -12.88763 -12.30678 -11.99322 -11.88966 -11.06301 -10.99008 -10.94051 -10.62311 -10.40724 -10.19788 -10.08971 -9.44130 -9.33146 -9.29872 -8.78180 -8.46232 -7.96323 -6.19438 -4.26246 0.43907 0.76798 1.88609 1.92116 2.59332 3.09230 3.22840 3.29950 3.33145 3.68443 3.95995 4.09509 4.29146 4.36683 4.71402 4.82667 4.86189 4.96347 5.14213 5.17249 5.35975 5.45798 5.52840 5.77183 5.78810 5.95213 6.20098 6.35098 6.88746 7.10706 7.21892 7.31532 7.44306 7.59035 7.70076 7.92011 8.52378 8.69122 8.94997 9.40037 10.90867 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017056 B = 0.004777 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.244419 B = 5859.484881 C = 7485.583530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.065 0.935 9 C 0.246 3.754 10 N -0.684 5.684 11 C 0.550 3.450 12 O -0.542 6.542 13 C 0.129 3.871 14 C -0.129 4.129 15 C -0.058 4.058 16 C -0.153 4.153 17 C 0.367 3.633 18 N -0.325 5.325 19 C 0.085 3.915 20 C -0.269 4.269 21 C 0.063 3.937 22 N -0.289 5.289 23 N -0.482 5.482 24 H 0.266 0.734 25 H 0.032 0.968 26 H 0.032 0.968 27 H 0.401 0.599 28 H 0.156 0.844 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.186 0.814 32 H 0.157 0.843 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.015 -14.854 -0.007 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.083 0.917 9 C 0.125 3.875 10 N -0.330 5.330 11 C 0.332 3.668 12 O -0.421 6.421 13 C -0.011 4.011 14 C -0.151 4.151 15 C -0.084 4.084 16 C -0.175 4.175 17 C 0.137 3.863 18 N -0.103 5.103 19 C -0.057 4.057 20 C -0.297 4.297 21 C -0.126 4.126 22 N -0.108 5.108 23 N -0.198 5.198 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.235 0.765 28 H 0.174 0.826 29 H 0.168 0.832 30 H 0.168 0.832 31 H 0.203 0.797 32 H 0.174 0.826 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 12.610 -15.087 -0.008 19.663 hybrid contribution 1.117 1.078 -0.001 1.552 sum 13.727 -14.009 -0.009 19.613 Atomic orbital electron populations 1.69977 1.06111 1.27278 1.48911 1.24940 0.94916 0.99464 0.94603 0.86346 0.79884 0.82851 0.77766 1.19563 1.20773 1.20766 1.21238 0.93393 0.90240 1.53249 0.91707 1.19260 0.88287 0.81801 0.98117 1.46414 1.12126 1.05439 1.69064 1.17782 0.86879 0.82935 0.79186 1.90766 1.14985 1.84444 1.51886 1.21363 0.88057 0.94663 0.96989 1.22207 1.02625 0.91687 0.98541 1.21536 0.91593 1.00333 0.94980 1.21742 0.97516 0.95501 1.02744 1.17598 0.81230 0.89745 0.97703 1.45782 1.02976 1.05120 1.56469 1.23069 0.94483 0.90042 0.98081 1.21675 0.94891 0.97259 1.15873 1.24132 0.97424 0.93108 0.97899 1.77401 0.93407 1.14926 1.25110 1.66739 1.02289 1.35975 1.14771 0.92447 0.95041 0.95029 0.76503 0.82585 0.83181 0.83238 0.79675 0.82579 0.79118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 8 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 9 C 0.25 6.47 5.43 -5.19 -0.03 6.45 16 10 N -0.68 -14.93 5.54 -62.33 -0.35 -15.27 16 11 C 0.55 11.36 7.81 -12.18 -0.10 11.27 16 12 O -0.54 -12.70 16.32 5.36 0.09 -12.61 16 13 C 0.13 2.14 6.75 -83.02 -0.56 1.58 16 14 C -0.13 -1.72 9.63 -39.04 -0.38 -2.09 16 15 C -0.06 -0.60 10.16 -39.34 -0.40 -1.00 16 16 C -0.15 -1.78 9.70 -39.14 -0.38 -2.16 16 17 C 0.37 5.21 7.55 -154.52 -1.17 4.05 16 18 N -0.33 -4.43 3.81 -12.10 -0.05 -4.48 16 19 C 0.08 1.04 11.10 -16.83 -0.19 0.85 16 20 C -0.27 -2.69 10.80 -39.99 -0.43 -3.12 16 21 C 0.06 0.61 12.02 -17.34 -0.21 0.40 16 22 N -0.29 -3.62 11.83 30.64 0.36 -3.25 16 23 N -0.48 -7.61 9.03 -8.85 -0.08 -7.69 16 24 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.40 7.96 7.65 -40.82 -0.31 7.65 16 28 H 0.16 1.96 7.63 -52.49 -0.40 1.56 16 29 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 30 H 0.15 1.52 7.68 -52.49 -0.40 1.12 16 31 H 0.19 2.12 8.05 -52.49 -0.42 1.70 16 32 H 0.16 1.16 8.06 -52.48 -0.42 0.73 16 33 H 0.19 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 303.72 15.07 4.58 4.58 Total: -1.00 -32.57 303.72 -7.16 -39.73 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -3.19 Total: 5.45 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -4.25 Total: 2.91 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.63 Total: -55.76 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.09 Total: -12.61 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.57 -7.16 -39.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427623236.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.511 kcal (2) G-P(sol) polarization free energy of solvation -32.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds