Wall clock time and date at job start Mon Mar 30 2020 00:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00223 * 2 1 4 4 H 1.48496 * 109.47021 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46748 * 300.00293 * 3 2 1 6 6 H 1.48497 * 109.46734 * 59.99783 * 3 2 1 7 7 C 1.37879 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00090 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99849 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47124 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99911 * 179.97438 * 10 9 7 12 12 O 1.21510 * 120.00148 * 0.02562 * 11 10 9 13 13 C 1.48164 * 119.99932 * 179.97438 * 11 10 9 14 14 C 1.39235 * 119.68758 * 180.02562 * 13 11 10 15 15 C 1.38711 * 119.19246 * 179.97438 * 14 13 11 16 16 C 1.38414 * 118.55299 * 359.75053 * 15 14 13 17 17 C 1.39260 * 119.29939 * 0.47928 * 16 15 14 18 18 N 1.39823 * 119.61828 * 179.79256 * 17 16 15 19 19 C 1.35842 * 126.10103 * 179.73994 * 18 17 16 20 20 C 1.35283 * 107.60899 * 179.68910 * 19 18 17 21 21 C 1.39956 * 107.96980 * 0.43199 * 20 19 18 22 22 N 1.30821 * 108.36748 * 359.55816 * 21 20 19 23 23 N 1.31980 * 120.76620 * 359.50568 * 17 16 15 24 24 H 0.96998 * 120.00056 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47476 * 59.99237 * 9 7 2 26 26 H 1.09001 * 109.47079 * 299.99644 * 9 7 2 27 27 H 0.97003 * 120.00317 * 359.97438 * 10 9 7 28 28 H 1.08002 * 120.39929 * 0.02646 * 14 13 11 29 29 H 1.08000 * 120.72169 * 180.02562 * 15 14 13 30 30 H 1.07995 * 120.34964 * 180.23786 * 16 15 14 31 31 H 1.07998 * 126.19907 * 359.96324 * 19 18 17 32 32 H 1.08003 * 126.01648 * 180.29148 * 20 19 18 33 33 H 1.08002 * 125.81889 * 179.83042 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0011 12 8 0.5590 -5.1054 0.0011 13 6 2.7165 -6.0096 0.0005 14 6 2.2452 -7.3197 0.0005 15 6 3.1556 -8.3662 -0.0006 16 6 4.5071 -8.0673 -0.0069 17 6 4.9103 -6.7344 -0.0019 18 7 6.2739 -6.4249 -0.0038 19 6 6.8115 -5.1774 -0.0044 20 6 8.1576 -5.3118 0.0006 21 6 8.4550 -6.6794 -0.0057 22 7 7.3293 -7.3461 -0.0045 23 7 4.0203 -5.7598 -0.0009 24 1 -0.4850 0.8400 0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6240 -2.5567 0.8903 27 1 3.1567 -3.4355 0.0002 28 1 1.1836 -7.5187 0.0005 29 1 2.8173 -9.3919 -0.0010 30 1 5.2411 -8.8595 -0.0118 31 1 6.2635 -4.2467 -0.0041 32 1 8.8763 -4.5057 0.0059 33 1 9.4450 -7.1110 -0.0064 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427623236.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:14 Heat of formation + Delta-G solvation = 64.533064 kcal Electronic energy + Delta-G solvation = -19380.607904 eV Core-core repulsion = 16214.589202 eV Total energy + Delta-G solvation = -3166.018702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.59714 -41.47590 -39.94323 -36.30452 -34.71547 -34.56354 -33.66081 -31.37267 -30.66372 -29.40191 -26.21857 -25.17344 -24.38620 -22.38528 -21.98506 -21.35538 -19.84037 -18.97758 -18.02618 -17.27017 -17.09963 -16.81697 -16.59534 -16.20133 -16.18213 -15.62411 -14.95919 -14.68714 -14.57178 -14.26728 -14.04012 -13.88577 -13.68345 -13.29738 -12.94014 -12.76808 -12.26709 -11.90879 -11.60311 -11.56897 -11.49978 -11.10675 -10.84361 -10.78319 -10.25244 -9.94910 -9.38008 -8.31374 -6.47845 -0.62078 -0.24382 0.96606 1.00325 1.42570 1.43602 1.57251 1.70785 1.83707 2.16443 2.41018 2.69817 2.99060 3.03829 3.37654 3.81144 3.83667 3.87668 4.07914 4.18866 4.33812 4.52954 4.71352 4.88024 4.94131 5.05731 5.06350 5.18427 5.26857 5.38640 5.56752 5.62183 5.79710 5.95625 6.17887 6.59513 6.64794 6.80558 7.14331 7.29260 8.81021 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.017056 B = 0.004777 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.244419 B = 5859.484881 C = 7485.583530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.263 3.737 10 N -0.686 5.686 11 C 0.551 3.449 12 O -0.578 6.578 13 C 0.101 3.899 14 C -0.125 4.125 15 C -0.034 4.034 16 C -0.141 4.141 17 C 0.352 3.648 18 N -0.342 5.342 19 C 0.053 3.947 20 C -0.256 4.256 21 C 0.072 3.928 22 N -0.311 5.311 23 N -0.500 5.500 24 H 0.270 0.730 25 H -0.003 1.003 26 H -0.003 1.003 27 H 0.410 0.590 28 H 0.161 0.839 29 H 0.201 0.799 30 H 0.171 0.829 31 H 0.181 0.819 32 H 0.183 0.817 33 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.130 -16.152 -0.008 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.596 4.596 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.333 5.333 11 C 0.336 3.664 12 O -0.458 6.458 13 C -0.037 4.037 14 C -0.147 4.147 15 C -0.060 4.060 16 C -0.163 4.163 17 C 0.122 3.878 18 N -0.121 5.121 19 C -0.087 4.087 20 C -0.284 4.284 21 C -0.117 4.117 22 N -0.130 5.130 23 N -0.217 5.217 24 H 0.079 0.921 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.246 0.754 28 H 0.179 0.821 29 H 0.218 0.782 30 H 0.189 0.811 31 H 0.198 0.802 32 H 0.201 0.799 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 15.757 -16.405 -0.009 22.746 hybrid contribution 0.265 1.349 -0.001 1.375 sum 16.022 -15.055 -0.009 21.985 Atomic orbital electron populations 1.70123 1.08145 1.28621 1.49748 1.26014 0.95792 1.03713 0.93675 0.85118 0.79027 0.77308 0.77831 1.17865 1.20260 1.20247 1.21584 0.94166 0.90536 1.53266 0.90247 1.18722 0.88528 0.83803 0.94847 1.46158 1.11794 1.05239 1.70132 1.18395 0.87344 0.83410 0.77287 1.90724 1.16887 1.85122 1.53116 1.20681 0.87876 0.93998 1.01162 1.22367 1.03584 0.90980 0.97778 1.22009 0.90249 1.01602 0.92112 1.22103 0.98573 0.94854 1.00761 1.17932 0.81530 0.90454 0.97896 1.45922 1.02887 1.05652 1.57629 1.23321 0.95737 0.89945 0.99704 1.22064 0.94297 0.98328 1.13723 1.24883 0.98298 0.92910 0.95580 1.77371 0.93918 1.15424 1.26280 1.66511 1.02150 1.37331 1.15685 0.92101 0.98532 0.98519 0.75381 0.82103 0.78242 0.81133 0.80152 0.79932 0.75060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 2 C 0.01 0.45 5.46 84.66 0.46 0.91 16 3 Si 0.98 42.63 29.54 68.60 2.03 44.66 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.56 -31.01 9.28 25.60 0.24 -30.77 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.26 14.77 5.43 85.64 0.46 15.24 16 10 N -0.69 -31.69 5.54 -469.40 -2.60 -34.29 16 11 C 0.55 24.01 7.81 86.88 0.68 24.69 16 12 O -0.58 -28.68 16.32 -3.75 -0.06 -28.75 16 13 C 0.10 3.41 6.75 41.88 0.28 3.69 16 14 C -0.13 -3.20 9.63 22.62 0.22 -2.98 16 15 C -0.03 -0.60 10.16 22.42 0.23 -0.37 16 16 C -0.14 -2.91 9.70 22.56 0.22 -2.69 16 17 C 0.35 9.69 7.55 132.94 1.00 10.69 16 18 N -0.34 -8.93 3.81 -192.18 -0.73 -9.66 16 19 C 0.05 1.27 11.10 83.39 0.93 2.19 16 20 C -0.26 -4.49 10.80 22.00 0.24 -4.25 16 21 C 0.07 1.16 12.02 85.26 1.02 2.19 16 22 N -0.31 -7.03 11.83 -56.97 -0.67 -7.71 16 23 N -0.50 -15.99 9.03 -181.90 -1.64 -17.64 16 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 25 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 26 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.41 17.12 7.65 -92.71 -0.71 16.41 16 28 H 0.16 3.92 7.63 -2.91 -0.02 3.90 16 29 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.17 2.84 7.68 -2.91 -0.02 2.81 16 31 H 0.18 4.23 8.05 -2.91 -0.02 4.21 16 32 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 33 H 0.23 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -74.71 303.72 3.03 -71.69 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: 0.44 Total: 18.71 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: 5.98 Total: 18.54 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -5.36 Total: -124.85 kcal Atomic # 8 Polarization: -28.68 SS G_CDS: -0.06 Total: -28.75 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -74.71 3.03 -71.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427623236.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.222 kcal (2) G-P(sol) polarization free energy of solvation -74.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds