Wall clock time and date at job start Mon Mar 30 2020 00:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00207 * 2 1 4 4 H 1.48499 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47040 * 299.99844 * 3 2 1 6 6 H 1.48497 * 109.46952 * 60.00156 * 3 2 1 7 7 C 1.37877 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00172 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47521 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00030 * 179.97438 * 10 9 7 12 12 O 1.21605 * 120.00116 * 0.02562 * 11 10 9 13 13 C 1.47312 * 119.99585 * 180.02562 * 11 10 9 14 14 C 1.37919 * 126.80966 * 0.18367 * 13 11 10 15 15 N 1.34194 * 107.89442 * 180.24282 * 14 13 11 16 16 H 0.97005 * 125.16517 * 179.70517 * 15 14 13 17 17 N 1.39774 * 109.66668 * 359.73819 * 15 14 13 18 18 C 1.31373 * 109.07289 * 0.02562 * 17 15 14 19 19 C 1.48262 * 126.51229 * 179.97438 * 18 17 15 20 20 C 1.39817 * 120.90991 * 145.02996 * 19 18 17 21 21 C 1.37959 * 119.01794 * 180.02562 * 20 19 18 22 22 N 1.31934 * 120.88425 * 359.97438 * 21 20 19 23 23 C 1.31923 * 122.01666 * 0.02562 * 22 21 20 24 24 C 1.37973 * 120.88748 * 359.97438 * 23 22 21 25 25 H 0.97002 * 119.99600 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47474 * 59.99379 * 9 7 2 27 27 H 1.09005 * 109.47224 * 299.99727 * 9 7 2 28 28 H 0.97004 * 119.99749 * 359.97438 * 10 9 7 29 29 H 1.08001 * 126.05219 * 359.96143 * 14 13 11 30 30 H 1.08004 * 120.48780 * 359.97182 * 20 19 18 31 31 H 1.08000 * 119.55967 * 180.27700 * 21 20 19 32 32 H 1.07998 * 119.55735 * 180.02562 * 23 22 21 33 33 H 1.08002 * 120.49286 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5580 -5.1056 0.0011 13 6 2.7108 -6.0031 0.0016 14 6 4.0871 -5.9136 0.0052 15 7 4.5814 -7.1612 -0.0010 16 1 5.5245 -7.3885 -0.0043 17 7 3.5311 -8.0834 -0.0027 18 6 2.3893 -7.4336 0.0017 19 6 1.0332 -8.0329 0.0012 20 6 -0.0201 -7.4270 0.6929 21 6 -1.2661 -8.0186 0.6666 22 7 -1.4697 -9.1392 0.0007 23 6 -0.5036 -9.7429 -0.6647 24 6 0.7726 -9.2193 -0.6910 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 3.1566 -3.4355 0.0002 29 1 4.6647 -5.0011 0.0076 30 1 0.1397 -6.5098 1.2404 31 1 -2.0869 -7.5557 1.1941 32 1 -0.7148 -10.6587 -1.1966 33 1 1.5586 -9.7186 -1.2381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427639178.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:11 Heat of formation + Delta-G solvation = 70.607382 kcal Electronic energy + Delta-G solvation = -19579.138886 eV Core-core repulsion = 16413.383586 eV Total energy + Delta-G solvation = -3165.755300 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.21545 -39.63270 -38.37549 -34.35759 -33.49221 -32.41880 -31.07889 -30.51719 -30.33054 -27.14155 -24.26428 -23.57271 -23.18895 -21.90012 -20.38091 -19.51006 -18.59155 -16.72740 -16.54328 -15.95418 -15.69588 -15.43479 -15.06357 -14.94878 -14.28563 -14.02133 -13.82890 -13.57707 -13.42984 -12.97743 -12.63839 -12.00493 -11.88653 -11.53154 -11.14590 -10.95445 -10.92354 -10.44112 -10.35648 -9.49199 -9.40760 -9.24400 -9.11818 -8.84051 -8.75671 -8.59419 -7.89008 -6.20345 -4.27407 0.96188 1.39296 1.54792 2.37326 2.55376 3.20546 3.27681 3.30102 3.90816 3.97611 4.05486 4.24959 4.40045 4.54091 4.64011 4.94023 5.15567 5.16228 5.29823 5.32343 5.43302 5.63934 5.82503 5.94032 6.06782 6.34130 6.49613 6.88227 6.95674 7.25978 7.35124 7.39831 7.48868 7.63085 7.93237 8.13708 8.57578 8.74571 9.05405 9.39420 10.89825 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.004436 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.845892 B = 6310.601008 C = 7422.971528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.572 3.428 12 O -0.548 6.548 13 C -0.262 4.262 14 C 0.101 3.899 15 N -0.466 5.466 16 H 0.443 0.557 17 N -0.281 5.281 18 C 0.161 3.839 19 C 0.018 3.982 20 C -0.098 4.098 21 C 0.089 3.911 22 N -0.481 5.481 23 C 0.081 3.919 24 C -0.145 4.145 25 H 0.266 0.734 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.387 0.613 29 H 0.191 0.809 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.481 -14.676 0.380 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.353 5.353 11 C 0.358 3.642 12 O -0.428 6.428 13 C -0.277 4.277 14 C -0.048 4.048 15 N -0.173 5.173 16 H 0.287 0.713 17 N -0.103 5.103 18 C -0.008 4.008 19 C 0.008 3.992 20 C -0.119 4.119 21 C -0.067 4.067 22 N -0.191 5.191 23 C -0.076 4.076 24 C -0.167 4.167 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.219 0.781 29 H 0.208 0.792 30 H 0.177 0.823 31 H 0.176 0.824 32 H 0.171 0.829 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.187 -16.143 0.372 17.675 hybrid contribution 2.128 2.258 -0.142 3.106 sum 9.316 -13.885 0.230 16.722 Atomic orbital electron populations 1.69979 1.06086 1.27235 1.48794 1.24939 0.94898 0.99417 0.94681 0.86378 0.79769 0.83054 0.77794 1.19696 1.20801 1.20779 1.21237 0.93232 0.90450 1.53325 0.91930 1.19135 0.88223 0.81669 0.97949 1.46338 1.10919 1.05797 1.72279 1.17180 0.87330 0.82159 0.77522 1.90695 1.15928 1.84224 1.51964 1.21675 0.92487 0.93634 1.19897 1.23095 0.94541 0.90009 0.97165 1.45901 1.09124 1.03552 1.58673 0.71284 1.77265 0.93957 1.14320 1.24719 1.21670 0.91663 0.90266 0.97179 1.17956 0.89358 0.94105 0.97801 1.22712 0.92335 0.99375 0.97478 1.22704 0.96297 0.91321 0.96423 1.67572 1.35103 1.09506 1.06916 1.22528 0.88522 0.99426 0.97130 1.22133 0.98782 0.95642 1.00107 0.92454 0.95340 0.95272 0.78093 0.79218 0.82298 0.82423 0.82900 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.39 13.29 55.43 0.74 -24.65 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -14.16 9.28 -34.44 -0.32 -14.48 16 8 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16 9 C 0.25 6.35 5.43 -5.20 -0.03 6.32 16 10 N -0.71 -14.00 5.54 -62.60 -0.35 -14.34 16 11 C 0.57 11.10 7.71 -12.57 -0.10 11.01 16 12 O -0.55 -12.25 12.48 5.27 0.07 -12.18 16 13 C -0.26 -4.07 6.28 -102.95 -0.65 -4.71 16 14 C 0.10 1.10 11.50 -16.64 -0.19 0.91 16 15 N -0.47 -4.61 7.20 30.81 0.22 -4.38 16 16 H 0.44 2.51 8.96 -182.84 -1.64 0.87 16 17 N -0.28 -3.80 12.65 34.57 0.44 -3.37 16 18 C 0.16 2.49 6.98 -80.56 -0.56 1.93 16 19 C 0.02 0.28 5.75 -104.60 -0.60 -0.32 16 20 C -0.10 -1.60 7.90 -39.09 -0.31 -1.91 16 21 C 0.09 1.34 11.17 -17.61 -0.20 1.15 16 22 N -0.48 -7.25 10.35 -13.35 -0.14 -7.39 16 23 C 0.08 1.05 11.17 -17.61 -0.20 0.86 16 24 C -0.15 -1.97 9.88 -39.09 -0.39 -2.35 16 25 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.39 6.34 7.27 -40.82 -0.30 6.04 16 29 H 0.19 1.34 7.48 -52.49 -0.39 0.95 16 30 H 0.16 2.82 5.77 -52.48 -0.30 2.51 16 31 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 32 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 296.72 15.07 4.47 4.47 Total: -1.00 -33.55 296.72 -7.48 -41.03 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.28 Total: 5.57 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -3.63 Total: 0.04 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.91 Total: -54.13 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.07 Total: -12.18 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -33.55 -7.48 -41.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427639178.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.638 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds