Wall clock time and date at job start Mon Mar 30 2020 00:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00207 * 2 1 4 4 H 1.48499 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48492 * 109.47040 * 299.99844 * 3 2 1 6 6 H 1.48497 * 109.46952 * 60.00156 * 3 2 1 7 7 C 1.37877 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00166 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00172 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.47521 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00030 * 179.97438 * 10 9 7 12 12 O 1.21605 * 120.00116 * 0.02562 * 11 10 9 13 13 C 1.47312 * 119.99585 * 180.02562 * 11 10 9 14 14 C 1.37919 * 126.80966 * 0.18367 * 13 11 10 15 15 N 1.34194 * 107.89442 * 180.24282 * 14 13 11 16 16 H 0.97005 * 125.16517 * 179.70517 * 15 14 13 17 17 N 1.39774 * 109.66668 * 359.73819 * 15 14 13 18 18 C 1.31373 * 109.07289 * 0.02562 * 17 15 14 19 19 C 1.48262 * 126.51229 * 179.97438 * 18 17 15 20 20 C 1.39817 * 120.90991 * 145.02996 * 19 18 17 21 21 C 1.37959 * 119.01794 * 180.02562 * 20 19 18 22 22 N 1.31934 * 120.88425 * 359.97438 * 21 20 19 23 23 C 1.31923 * 122.01666 * 0.02562 * 22 21 20 24 24 C 1.37973 * 120.88748 * 359.97438 * 23 22 21 25 25 H 0.97002 * 119.99600 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.47474 * 59.99379 * 9 7 2 27 27 H 1.09005 * 109.47224 * 299.99727 * 9 7 2 28 28 H 0.97004 * 119.99749 * 359.97438 * 10 9 7 29 29 H 1.08001 * 126.05219 * 359.96143 * 14 13 11 30 30 H 1.08004 * 120.48780 * 359.97182 * 20 19 18 31 31 H 1.08000 * 119.55967 * 180.27700 * 21 20 19 32 32 H 1.07998 * 119.55735 * 180.02562 * 23 22 21 33 33 H 1.08002 * 120.49286 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5580 -5.1056 0.0011 13 6 2.7108 -6.0031 0.0016 14 6 4.0871 -5.9136 0.0052 15 7 4.5814 -7.1612 -0.0010 16 1 5.5245 -7.3885 -0.0043 17 7 3.5311 -8.0834 -0.0027 18 6 2.3893 -7.4336 0.0017 19 6 1.0332 -8.0329 0.0012 20 6 -0.0201 -7.4270 0.6929 21 6 -1.2661 -8.0186 0.6666 22 7 -1.4697 -9.1392 0.0007 23 6 -0.5036 -9.7429 -0.6647 24 6 0.7726 -9.2193 -0.6910 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 3.1566 -3.4355 0.0002 29 1 4.6647 -5.0011 0.0076 30 1 0.1397 -6.5098 1.2404 31 1 -2.0869 -7.5557 1.1941 32 1 -0.7148 -10.6587 -1.1966 33 1 1.5586 -9.7186 -1.2381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427639178.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:10 Heat of formation + Delta-G solvation = 45.003569 kcal Electronic energy + Delta-G solvation = -19580.249151 eV Core-core repulsion = 16413.383586 eV Total energy + Delta-G solvation = -3166.865565 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.28241 -40.73589 -39.93884 -36.13023 -34.69979 -34.26446 -32.20121 -31.60560 -31.55947 -29.00140 -25.47111 -25.07505 -24.41748 -23.39454 -21.52508 -20.93050 -19.78911 -18.40098 -17.63015 -17.19929 -17.05747 -16.87794 -16.71341 -16.14730 -15.85030 -15.42167 -14.94594 -14.79524 -14.65737 -14.38570 -14.05354 -13.79881 -13.63795 -12.86923 -12.75896 -12.65567 -12.20987 -12.11865 -11.52314 -11.40726 -10.86967 -10.77752 -10.45617 -10.22059 -10.01564 -9.85434 -9.57703 -8.25186 -6.40987 -0.18112 0.27296 0.52476 1.20325 1.46373 1.47112 1.60040 1.68320 2.35293 2.48339 2.63021 2.91880 3.10702 3.19129 3.53723 3.60355 3.99871 4.13041 4.17016 4.24330 4.36780 4.44844 4.71189 4.79957 4.96472 5.16271 5.24216 5.31815 5.36241 5.54076 5.73693 5.78854 5.89716 6.16741 6.37166 6.70324 7.00051 7.01582 7.28305 7.56296 8.87189 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.022986 B = 0.004436 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.845892 B = 6310.601008 C = 7422.971528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.982 3.018 4 H -0.250 1.250 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.552 4.552 8 H 0.087 0.913 9 C 0.269 3.731 10 N -0.700 5.700 11 C 0.571 3.429 12 O -0.587 6.587 13 C -0.305 4.305 14 C 0.144 3.856 15 N -0.439 5.439 16 H 0.465 0.535 17 N -0.287 5.287 18 C 0.146 3.854 19 C 0.001 3.999 20 C -0.119 4.119 21 C 0.079 3.921 22 N -0.497 5.497 23 C 0.085 3.915 24 C -0.143 4.143 25 H 0.267 0.733 26 H -0.013 1.013 27 H -0.010 1.010 28 H 0.406 0.594 29 H 0.237 0.763 30 H 0.135 0.865 31 H 0.168 0.832 32 H 0.192 0.808 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.019 -15.223 -0.173 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.173 1.173 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.590 4.590 8 H 0.105 0.895 9 C 0.146 3.854 10 N -0.349 5.349 11 C 0.360 3.640 12 O -0.470 6.470 13 C -0.321 4.321 14 C -0.008 4.008 15 N -0.148 5.148 16 H 0.315 0.685 17 N -0.109 5.109 18 C -0.022 4.022 19 C -0.009 4.009 20 C -0.140 4.140 21 C -0.076 4.076 22 N -0.207 5.207 23 C -0.072 4.072 24 C -0.163 4.163 25 H 0.076 0.924 26 H 0.005 0.995 27 H 0.008 0.992 28 H 0.242 0.758 29 H 0.253 0.747 30 H 0.153 0.847 31 H 0.185 0.815 32 H 0.209 0.791 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 10.805 -16.746 -0.174 19.930 hybrid contribution 1.091 2.300 0.016 2.545 sum 11.896 -14.446 -0.158 18.714 Atomic orbital electron populations 1.70149 1.08299 1.28365 1.50226 1.26030 0.95696 1.03808 0.94036 0.85148 0.79293 0.77547 0.77446 1.17304 1.20827 1.20731 1.21656 0.94424 0.90425 1.52445 0.89480 1.18534 0.88613 0.83982 0.94222 1.45949 1.11024 1.04856 1.73119 1.17725 0.87622 0.82680 0.76019 1.90684 1.18123 1.84839 1.53331 1.21298 0.93763 0.92266 1.24730 1.23613 0.92862 0.91528 0.92751 1.45953 1.09773 1.02829 1.56215 0.68499 1.77222 0.93937 1.14978 1.24714 1.21700 0.92090 0.90425 0.97990 1.18235 0.89683 0.94968 0.97988 1.22542 0.93497 0.99188 0.98754 1.22865 0.96273 0.91697 0.96785 1.67643 1.35976 1.09518 1.07585 1.23182 0.87959 1.00068 0.95994 1.22400 0.99638 0.94800 0.99495 0.92395 0.99535 0.99161 0.75782 0.74687 0.84697 0.81487 0.79136 0.82588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 2 C 0.00 0.20 5.46 84.65 0.46 0.67 16 3 Si 0.98 41.01 29.54 68.60 2.03 43.04 16 4 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -28.73 9.28 25.60 0.24 -28.49 16 8 H 0.09 4.01 7.60 -2.91 -0.02 3.98 16 9 C 0.27 14.26 5.43 85.63 0.46 14.72 16 10 N -0.70 -28.05 5.54 -470.22 -2.60 -30.66 16 11 C 0.57 22.82 7.71 86.63 0.67 23.49 16 12 O -0.59 -28.14 12.48 -4.05 -0.05 -28.19 16 13 C -0.31 -9.21 6.28 -18.78 -0.12 -9.32 16 14 C 0.14 2.61 11.50 84.26 0.97 3.57 16 15 N -0.44 -6.92 7.20 -56.43 -0.41 -7.33 16 16 H 0.47 2.98 8.96 -213.52 -1.91 1.07 16 17 N -0.29 -7.05 12.65 -44.53 -0.56 -7.62 16 18 C 0.15 4.43 6.98 44.07 0.31 4.73 16 19 C 0.00 0.05 5.75 -19.85 -0.11 -0.07 16 20 C -0.12 -4.12 7.90 22.59 0.18 -3.95 16 21 C 0.08 2.53 11.17 84.61 0.95 3.47 16 22 N -0.50 -15.00 10.35 -196.14 -2.03 -17.03 16 23 C 0.08 2.11 11.17 84.62 0.95 3.05 16 24 C -0.14 -3.70 9.88 22.59 0.22 -3.48 16 25 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 26 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 27 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 28 H 0.41 12.60 7.27 -92.71 -0.67 11.92 16 29 H 0.24 1.98 7.48 -2.91 -0.02 1.96 16 30 H 0.14 5.30 5.77 -2.91 -0.02 5.28 16 31 H 0.17 4.70 8.06 -2.91 -0.02 4.67 16 32 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -77.67 296.72 0.42 -77.25 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -1.41 Total: 17.14 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 5.17 Total: 8.40 kcal Atomic # 7 Polarization: -112.31 SS G_CDS: -5.32 Total: -117.63 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.05 Total: -28.19 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Total: -77.67 0.42 -77.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427639178.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.253 kcal (2) G-P(sol) polarization free energy of solvation -77.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds