Wall clock time and date at job start Mon Mar 30 2020 01:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46590 * 196.55093 * 3 2 1 5 5 C 1.36935 * 120.00070 * 264.20020 * 4 3 2 6 6 H 1.07992 * 120.00209 * 196.96520 * 5 4 3 7 7 C 1.38820 * 120.00071 * 16.96073 * 5 4 3 8 8 N 1.31624 * 119.99649 * 22.07203 * 7 5 4 9 9 Si 1.86799 * 120.00053 * 202.07896 * 7 5 4 10 10 H 1.48491 * 109.47435 * 89.99960 * 9 7 5 11 11 H 1.48499 * 109.46587 * 209.99963 * 9 7 5 12 12 H 1.48502 * 109.46733 * 329.99340 * 9 7 5 13 13 C 1.46501 * 119.99751 * 84.20309 * 4 3 2 14 14 C 1.50700 * 109.46875 * 269.99306 * 13 4 3 15 15 C 1.35282 * 120.01192 * 115.00144 * 14 13 4 16 16 C 1.40926 * 119.84495 * 179.97438 * 15 14 13 17 17 O 1.21822 * 120.08345 * 180.02562 * 16 15 14 18 18 N 1.34735 * 119.83208 * 0.28114 * 16 15 14 19 19 N 1.40052 * 132.30114 * 180.38939 * 18 16 15 20 20 C 1.30968 * 108.42903 * 179.54322 * 19 18 16 21 21 C 1.39571 * 108.62925 * 359.75814 * 20 19 18 22 22 C 1.36270 * 107.87422 * 359.97438 * 21 20 19 23 23 N 1.36224 * 120.01773 * 294.98072 * 14 13 4 24 24 H 0.96999 * 119.94663 * 0.02562 * 23 14 13 25 25 H 4.40641 * 5.51478 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.47017 * 76.55548 * 3 2 1 27 27 H 1.08995 * 109.47313 * 316.54741 * 3 2 1 28 28 H 0.96999 * 119.99419 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.46979 * 149.99714 * 13 4 3 30 30 H 1.08995 * 109.46986 * 29.99803 * 13 4 3 31 31 H 1.08004 * 120.07779 * 359.96250 * 15 14 13 32 32 H 1.08004 * 125.68068 * 179.75841 * 20 19 18 33 33 H 1.07998 * 126.06486 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3250 0.3935 5 6 3.4744 2.2417 -0.5649 6 1 4.0801 3.0967 -0.3033 7 6 3.0414 2.0721 -1.8729 8 7 1.9880 1.3244 -2.1256 9 14 3.9537 2.9047 -3.2742 10 1 5.0226 2.0031 -3.7739 11 1 3.0031 3.2033 -4.3753 12 1 4.5604 4.1697 -2.7874 13 6 3.2568 1.6683 1.8124 14 6 1.9660 2.2781 2.2954 15 6 1.2239 1.6397 3.2291 16 6 0.0177 2.2133 3.6787 17 8 -0.6538 1.6425 4.5197 18 7 -0.3935 3.3922 3.1723 19 7 -1.5184 4.1866 3.4273 20 6 -1.4506 5.2548 2.6725 21 6 -0.2822 5.1898 1.9118 22 6 0.3634 4.0339 2.2347 23 7 1.5463 3.4724 1.7924 24 1 2.0787 3.9298 1.1229 25 1 -1.0502 -0.0003 -0.0003 26 1 3.0094 -0.2381 -0.9995 27 1 3.0097 -0.7452 0.7067 28 1 1.6852 1.2062 -3.0395 29 1 4.0683 2.3841 1.9439 30 1 3.4704 0.7672 2.3870 31 1 1.5549 0.6926 3.6289 32 1 -2.1776 6.0529 2.6436 33 1 0.0516 5.9254 1.1950 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491744666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:31 Heat of formation + Delta-G solvation = 138.079646 kcal Electronic energy + Delta-G solvation = -20758.751792 eV Core-core repulsion = 17595.922309 eV Total energy + Delta-G solvation = -3162.829483 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.52515 -40.00490 -39.33272 -37.50519 -33.82152 -33.77363 -33.42037 -32.05898 -30.17141 -28.50163 -27.83973 -24.98856 -24.28266 -22.75422 -22.33160 -19.90453 -19.35881 -19.01999 -18.34713 -17.68371 -17.52489 -17.05179 -16.64895 -15.65689 -15.51983 -15.26269 -14.85009 -14.71953 -14.46874 -14.15434 -13.96354 -13.77282 -13.39790 -13.13242 -12.76934 -12.57010 -12.20028 -12.01223 -11.94135 -11.42948 -10.99658 -10.83803 -10.80856 -10.45033 -10.31117 -9.15170 -8.88031 -7.89602 -5.33474 0.03495 0.18196 1.08571 1.52665 1.59112 1.63553 1.70582 1.77984 2.22447 2.41698 2.49944 2.57962 3.22254 3.33552 3.60387 3.74236 3.95885 4.03093 4.09012 4.32638 4.48166 4.60265 4.81166 4.87691 4.88920 4.93063 5.30423 5.36459 5.54775 5.57021 5.68099 5.98105 6.04448 6.14545 6.19167 6.88966 6.99088 7.29489 7.70581 8.11859 9.09997 Molecular weight = 272.10amu Principal moments of inertia in cm(-1) A = 0.020430 B = 0.006918 C = 0.006092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.173782 B = 4046.318893 C = 4594.807371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.109 4.109 3 C 0.264 3.736 4 N -0.577 5.577 5 C -0.278 4.278 6 H 0.100 0.900 7 C -0.031 4.031 8 N -0.903 5.903 9 Si 0.958 3.042 10 H -0.291 1.291 11 H -0.313 1.313 12 H -0.262 1.262 13 C 0.164 3.836 14 C 0.241 3.759 15 C -0.352 4.352 16 C 0.554 3.446 17 O -0.571 6.571 18 N -0.380 5.380 19 N -0.333 5.333 20 C 0.108 3.892 21 C -0.291 4.291 22 C 0.296 3.704 23 N -0.572 5.572 24 H 0.444 0.556 25 H 0.195 0.805 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.247 0.753 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.178 0.822 32 H 0.244 0.756 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.416 6.450 3.901 8.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.330 4.330 2 C -0.112 4.112 3 C 0.139 3.861 4 N -0.294 5.294 5 C -0.407 4.407 6 H 0.118 0.882 7 C -0.229 4.229 8 N -0.545 5.545 9 Si 0.788 3.212 10 H -0.218 1.218 11 H -0.241 1.241 12 H -0.186 1.186 13 C 0.037 3.963 14 C 0.123 3.877 15 C -0.382 4.382 16 C 0.358 3.642 17 O -0.451 6.451 18 N -0.181 5.181 19 N -0.153 5.153 20 C -0.079 4.079 21 C -0.323 4.323 22 C 0.078 3.922 23 N -0.188 5.188 24 H 0.287 0.713 25 H 0.212 0.788 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.195 0.805 32 H 0.260 0.740 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.362 5.338 5.148 8.142 hybrid contribution -0.103 0.754 -2.028 2.166 sum 3.259 6.092 3.120 7.581 Atomic orbital electron populations 1.24679 0.96244 1.04845 1.07258 1.24592 0.95890 0.96085 0.94591 1.18025 0.81697 0.86181 1.00211 1.44553 1.73035 1.11449 1.00400 1.19647 1.25999 1.06937 0.88078 0.88236 1.25586 0.96497 1.00346 1.00520 1.70303 1.22292 1.42977 1.18962 0.85422 0.77552 0.78811 0.79402 1.21799 1.24089 1.18586 1.20968 0.89283 1.01131 0.84956 1.22930 0.98359 0.81419 0.85023 1.21205 0.97605 1.07816 1.11578 1.17678 0.87194 0.77785 0.81530 1.90766 1.58372 1.61303 1.34630 1.48124 1.18310 1.19028 1.32666 1.77729 1.04205 1.06216 1.27101 1.24782 0.97069 0.95544 0.90492 1.21188 0.99032 0.99731 1.12328 1.19433 0.86970 0.93790 0.92041 1.41197 1.18374 1.19606 1.39610 0.71334 0.78757 0.90357 0.90236 0.94332 0.86945 0.86592 0.80517 0.74044 0.79012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -14.05 19.25 74.32 1.43 -12.62 16 2 C -0.11 -4.79 11.28 31.13 0.35 -4.44 16 3 C 0.26 10.24 5.45 84.57 0.46 10.70 16 4 N -0.58 -20.69 2.49 -716.91 -1.79 -22.47 16 5 C -0.28 -11.01 9.07 84.04 0.76 -10.24 16 6 H 0.10 3.55 7.90 -2.91 -0.02 3.53 16 7 C -0.03 -1.37 4.85 84.86 0.41 -0.96 16 8 N -0.90 -44.84 9.50 21.65 0.21 -44.63 16 9 Si 0.96 37.39 29.61 68.60 2.03 39.42 16 10 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.31 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 13 C 0.16 4.41 6.02 85.63 0.52 4.92 16 14 C 0.24 7.55 6.10 41.19 0.25 7.80 16 15 C -0.35 -12.51 9.55 22.25 0.21 -12.30 16 16 C 0.55 24.04 7.69 84.91 0.65 24.69 16 17 O -0.57 -28.71 17.91 -4.74 -0.08 -28.79 16 18 N -0.38 -15.31 3.81 -317.16 -1.21 -16.52 16 19 N -0.33 -12.63 12.64 -57.15 -0.72 -13.35 16 20 C 0.11 2.86 11.99 85.14 1.02 3.89 16 21 C -0.29 -7.76 10.83 22.13 0.24 -7.52 16 22 C 0.30 9.93 7.93 131.38 1.04 10.98 16 23 N -0.57 -17.71 5.42 -180.47 -0.98 -18.69 16 24 H 0.44 12.44 8.24 -92.71 -0.76 11.67 16 25 H 0.20 8.10 7.80 -4.41 -0.03 8.06 16 26 H 0.08 3.45 6.42 -2.39 -0.02 3.44 16 27 H 0.08 2.52 7.98 -2.39 -0.02 2.50 16 28 H 0.25 12.58 8.31 -92.71 -0.77 11.81 16 29 H 0.11 2.41 8.02 -2.39 -0.02 2.39 16 30 H 0.12 2.52 7.66 -2.39 -0.02 2.50 16 31 H 0.18 5.59 7.91 -2.91 -0.02 5.56 16 32 H 0.24 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -68.75 299.07 5.20 -63.56 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.39 Total: 26.59 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 7.35 Total: 14.90 kcal Atomic # 7 Polarization: -111.18 SS G_CDS: -4.49 Total: -115.67 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.08 Total: -28.79 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -68.75 5.20 -63.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491744666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.637 kcal (2) G-P(sol) polarization free energy of solvation -68.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds